FFCP PHASE1:Hg19::chr3:106959508..106959513,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=344595|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-25bp_to_ENST00000463143,ENST00000466734,ENST00000490441,NR_028301,NR_028302,uc003dwg.3,uc010hpq.2_5end|description=CAGE_peak_2_at_LOC344595_5end|id=chr3:106959508..106959513,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002615;2.47e-07;3!CL:0000307;2.47e-07;3|ontology_enrichment_celltype_v019_2=CL:0000068,2.97e-07,3;CL:0000069,2.97e-07,3;CL:0000307,2.97e-07,3;CL:0000377,2.97e-07,3;CL:0002615,3.35e-07,3|ontology_enrichment_development_v019=CL:0000377;2.47e-07;3!UBERON:0006215;2.47e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!2.03e-32!86;UBERON:0000073!4.69e-32!94;UBERON:0001016!4.69e-32!94;UBERON:0001017!3.12e-31!82;UBERON:0001049!3.44e-29!57;UBERON:0005068!3.44e-29!57;UBERON:0006241!3.44e-29!57;UBERON:0007135!3.44e-29!57;UBERON:0000955!3.63e-28!69;UBERON:0006238!3.63e-28!69;UBERON:0002616!2.09e-27!59;UBERON:0003075!5.56e-26!86;UBERON:0007284!5.56e-26!86;UBERON:0002346!1.50e-24!90;UBERON:0000033!3.46e-24!123;UBERON:0000153!5.90e-24!129;UBERON:0007811!5.90e-24!129;UBERON:0004121!2.12e-23!169;UBERON:0002780!4.63e-23!41;UBERON:0001890!4.63e-23!41;UBERON:0006240!4.63e-23!41;UBERON:0000924!1.13e-22!173;UBERON:0006601!1.13e-22!173;UBERON:0003080!3.68e-22!42;UBERON:0003056!8.87e-20!61;UBERON:0002020!2.78e-19!34;UBERON:0003528!2.78e-19!34;UBERON:0001893!6.07e-19!34;UBERON:0002791!2.51e-18!33;UBERON:0001869!2.52e-17!32;UBERON:0000475!2.22e-15!365;UBERON:0002619!1.93e-14!22;UBERON:0000956!3.09e-14!25;UBERON:0000203!3.09e-14!25;UBERON:0007023!2.81e-13!115;UBERON:0001950!4.61e-13!20;UBERON:0000119!5.38e-10!312;UBERON:0000483!8.86e-10!309;UBERON:0000064!1.25e-09!219;UBERON:0000477!3.80e-09!286;UBERON:0003076!3.73e-08!15;UBERON:0003057!3.73e-08!15;UBERON:0000922!1.44e-07!612;UBERON:0000481!1.63e-07!347;UBERON:0000062!2.92e-07!511;UBERON:0000923!3.87e-07!604;UBERON:0005291!3.87e-07!604;UBERON:0006598!3.87e-07!604;UBERON:0002532!3.87e-07!604;UBERON:0000468!4.12e-07!659;UBERON:0002050!4.81e-07!605;UBERON:0005423!4.81e-07!605;UBERON:0000025!7.62e-07!194;UBERON:0004111!9.80e-07!241|ontology_enrichment_uberon_v019=UBERON:0001950;1.51e-21;20!UBERON:0002619;1.08e-19;22!UBERON:0000956;1.93e-17;25!UBERON:0000203;1.93e-17;25!UBERON:0003528;6.82e-16;34!UBERON:0002020;6.82e-16;34!UBERON:0001872;2.02e-15;5!UBERON:0002021;2.02e-15;5!UBERON:0001869;1.28e-14;32!UBERON:0004733;3.44e-14;12!UBERON:0002028;3.44e-14;12!UBERON:0002791;1.37e-13;32!UBERON:0004732;3.78e-13;13!UBERON:0002298;5.10e-13;6!UBERON:0001893;3.67e-12;34!UBERON:0001017;4.32e-11;75!UBERON:0000955;4.68e-11;68!UBERON:0002780;1.42e-10;41!UBERON:0001890;1.42e-10;41!UBERON:0002148;2.27e-10;2!UBERON:0006331;2.27e-10;2!UBERON:0009662;2.27e-10;2!UBERON:0000073;2.45e-10;53!UBERON:0002616;2.45e-10;53!UBERON:0002680;5.41e-09;9!UBERON:0001895;5.41e-09;9!UBERON:0001016;2.15e-07;83!UBERON:0000988;2.47e-07;3!UBERON:0001896;2.47e-07;3!UBERON:0005290;2.47e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.88e-21,20;UBERON:0000073,6.13e-21,53;UBERON:0002616,6.13e-21,53;UBERON:0000955,2.23e-20,68;UBERON:0006238,2.23e-20,68;UBERON:0001049,8.09e-20,56;UBERON:0005068,8.09e-20,56;UBERON:0006241,8.09e-20,56;UBERON:0007135,8.09e-20,56;UBERON:0002619,1.32e-19,22;UBERON:0003528,2.14e-18,34;UBERON:0002020,2.14e-18,34;UBERON:0000956,2.30e-17,25;UBERON:0000203,2.30e-17,25;UBERON:0001017,4.15e-17,81;UBERON:0001872,1.88e-15,5;UBERON:0001016,2.20e-15,89;UBERON:0002021,2.70e-15,5;UBERON:0004733,2.40e-14,12;UBERON:0002028,2.40e-14,12;UBERON:0007277,2.40e-14,12;UBERON:0002791,1.03e-13,32;UBERON:0001869,1.03e-13,32;UBERON:0003075,1.76e-13,82;UBERON:0007284,1.76e-13,82;UBERON:0004732,2.71e-13,13;UBERON:0002298,3.34e-13,6;UBERON:0001893,6.18e-13,34;UBERON:0002346,7.69e-13,86;UBERON:0003076,1.32e-11,15;UBERON:0003057,1.32e-11,15;UBERON:0002780,8.54e-11,41;UBERON:0001890,8.54e-11,41;UBERON:0003080,8.54e-11,41;UBERON:0006240,8.54e-11,41;UBERON:0010371,1.48e-10,104;UBERON:0002148,1.72e-10,2;UBERON:0006331,1.72e-10,2;UBERON:0009662,1.72e-10,2;UBERON:0002680,4.61e-09,9;UBERON:0001895,4.61e-09,9;UBERON:0010092,4.61e-09,9;UBERON:0010314,3.21e-08,132;UBERON:0004121,7.79e-08,171;UBERON:0000924,7.79e-08,171;UBERON:0006601,7.79e-08,171;UBERON:0007023,1.73e-07,114;UBERON:0001896,1.93e-07,3;UBERON:0005290,1.93e-07,3;UBERON:0010096,1.93e-07,3;UBERON:0000988,2.05e-07,3;UBERON:0003056,2.53e-07,61;UBERON:0011216,2.76e-07,223|phase1_expression=0,0.214100523890983,0.140954404095971,1.0007329835313,0.446961094427288,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0.602694528023977,0,0.975865597581014,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=344595 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-25bp_to_ENST00000463143,ENST00000466734,ENST00000490441,NR_028301,NR_028302,uc003dwg.3,uc010hpq.2_5end | |||
|description=CAGE_peak_2_at_LOC344595_5end | |||
|id=chr3:106959508..106959513,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002615;2.47e-07;3!CL:0000307;2.47e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,2.97e-07,3;CL:0000069,2.97e-07,3;CL:0000307,2.97e-07,3;CL:0000377,2.97e-07,3;CL:0002615,3.35e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000377;2.47e-07;3!UBERON:0006215;2.47e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.03e-32!86;UBERON:0000073!4.69e-32!94;UBERON:0001016!4.69e-32!94;UBERON:0001017!3.12e-31!82;UBERON:0001049!3.44e-29!57;UBERON:0005068!3.44e-29!57;UBERON:0006241!3.44e-29!57;UBERON:0007135!3.44e-29!57;UBERON:0000955!3.63e-28!69;UBERON:0006238!3.63e-28!69;UBERON:0002616!2.09e-27!59;UBERON:0003075!5.56e-26!86;UBERON:0007284!5.56e-26!86;UBERON:0002346!1.50e-24!90;UBERON:0000033!3.46e-24!123;UBERON:0000153!5.90e-24!129;UBERON:0007811!5.90e-24!129;UBERON:0004121!2.12e-23!169;UBERON:0002780!4.63e-23!41;UBERON:0001890!4.63e-23!41;UBERON:0006240!4.63e-23!41;UBERON:0000924!1.13e-22!173;UBERON:0006601!1.13e-22!173;UBERON:0003080!3.68e-22!42;UBERON:0003056!8.87e-20!61;UBERON:0002020!2.78e-19!34;UBERON:0003528!2.78e-19!34;UBERON:0001893!6.07e-19!34;UBERON:0002791!2.51e-18!33;UBERON:0001869!2.52e-17!32;UBERON:0000475!2.22e-15!365;UBERON:0002619!1.93e-14!22;UBERON:0000956!3.09e-14!25;UBERON:0000203!3.09e-14!25;UBERON:0007023!2.81e-13!115;UBERON:0001950!4.61e-13!20;UBERON:0000119!5.38e-10!312;UBERON:0000483!8.86e-10!309;UBERON:0000064!1.25e-09!219;UBERON:0000477!3.80e-09!286;UBERON:0003076!3.73e-08!15;UBERON:0003057!3.73e-08!15;UBERON:0000922!1.44e-07!612;UBERON:0000481!1.63e-07!347;UBERON:0000062!2.92e-07!511;UBERON:0000923!3.87e-07!604;UBERON:0005291!3.87e-07!604;UBERON:0006598!3.87e-07!604;UBERON:0002532!3.87e-07!604;UBERON:0000468!4.12e-07!659;UBERON:0002050!4.81e-07!605;UBERON:0005423!4.81e-07!605;UBERON:0000025!7.62e-07!194;UBERON:0004111!9.80e-07!241 | |||
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| |||
|short_description=p2@LOC344595 | |||
}} |
Revision as of 20:37, 12 September 2013
Short description: | p2@LOC344595 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LOC344595_5end |
Coexpression cluster: | NA |
Association with transcript: | -25bp_to_ENST00000463143, ENST00000466734, ENST00000490441, NR_028301, NR_028302, uc003dwg.3, uc010hpq.2_5end |
EntrezGene: | LOC344595 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 2.97e-07 | 3 |
branched duct epithelial cell | 2.97e-07 | 3 |
tracheal epithelial cell | 2.97e-07 | 3 |
tracheoblast | 2.97e-07 | 3 |
adipocyte of omentum tissue | 3.35e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.