FFCP PHASE1:Hg19::chr4:6919401..6919404,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4423|description=CAGE_peak_at_chr4:6919401..6919404,-|id=chr4:6919401..6919404,-|ontology_enrichment_celltype=CL:0000766!7.90e-10!76;CL:0000557!7.99e-10!71;CL:0000763!1.51e-08!112;CL:0000049!1.51e-08!112;CL:0000839!5.69e-08!70;CL:0002274!3.90e-07!5;CL:0000457!3.90e-07!5;CL:0002191!3.90e-07!5;CL:0000097!3.90e-07!5;CL:0000831!3.90e-07!5;CL:0002028!3.90e-07!5;CL:0002009!4.36e-07!65|ontology_enrichment_celltype_v019=CL:0001014;8.08e-18;2!CL:0001016;8.08e-18;2!CL:0000097;4.35e-16;5!CL:0000775;1.15e-12;3!CL:0000094;2.65e-10;8!CL:0000163;3.60e-09;9!CL:0000453;1.15e-07;5!CL:0000081;1.28e-07;11|ontology_enrichment_celltype_v019_2=CL:0001014,8.08e-18,2;CL:0001016,8.08e-18,2;CL:0000097,4.25e-16,5;CL:0002028,4.25e-16,5;CL:0000775,1.15e-12,3;CL:0000094,2.57e-10,8;CL:0000163,3.56e-09,9;CL:0000453,1.15e-07,5;CL:0000081,1.25e-07,11|ontology_enrichment_development_v019=UBERON:0006241;2.77e-12;3!UBERON:0003057;2.77e-12;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!4.46e-34!115;UBERON:0001049!1.13e-19!57;UBERON:0005068!1.13e-19!57;UBERON:0006241!1.13e-19!57;UBERON:0007135!1.13e-19!57;UBERON:0002616!6.16e-17!59;UBERON:0002390!4.99e-16!102;UBERON:0003061!4.99e-16!102;UBERON:0002193!1.09e-14!112;UBERON:0001017!2.86e-14!82;UBERON:0000955!3.01e-14!69;UBERON:0006238!3.01e-14!69;UBERON:0005743!3.27e-14!86;UBERON:0003075!2.01e-13!86;UBERON:0007284!2.01e-13!86;UBERON:0002780!1.25e-12!41;UBERON:0001890!1.25e-12!41;UBERON:0006240!1.25e-12!41;UBERON:0002346!1.92e-12!90;UBERON:0003080!3.29e-12!42;UBERON:0000073!4.78e-12!94;UBERON:0001016!4.78e-12!94;UBERON:0002298!3.00e-11!8;UBERON:0002308!2.97e-10!9;UBERON:0000125!2.97e-10!9;UBERON:0002020!4.93e-10!34;UBERON:0003528!4.93e-10!34;UBERON:0000178!1.34e-09!15;UBERON:0000179!1.34e-09!15;UBERON:0000463!1.34e-09!15;UBERON:0001893!1.74e-09!34;UBERON:0003076!2.99e-09!15;UBERON:0003057!2.99e-09!15;UBERON:0002791!1.10e-08!33;UBERON:0002371!5.14e-08!80;UBERON:0001869!9.51e-08!32;UBERON:0003056!1.03e-07!61;UBERON:0002405!1.12e-07!115;UBERON:0002420!1.44e-07!9;UBERON:0007245!1.44e-07!9;UBERON:0010009!1.44e-07!9;UBERON:0010011!1.44e-07!9;UBERON:0000454!1.44e-07!9;UBERON:0004733!4.76e-07!12;UBERON:0002028!4.76e-07!12;UBERON:0007277!4.76e-07!12;UBERON:0001474!4.87e-07!86;UBERON:0009663!6.00e-07!7;UBERON:0006331!7.32e-07!3|ontology_enrichment_uberon_v019=UBERON:0001875;1.59e-17;2!UBERON:0006514;1.59e-17;2!UBERON:0000178;8.72e-14;15!UBERON:0000179;8.72e-14;15!UBERON:0000463;8.72e-14;15!UBERON:0002240;2.77e-12;3!UBERON:0005174;2.77e-12;3!UBERON:0001137;2.77e-12;3!UBERON:0002784;4.40e-09;4!UBERON:0002420;8.52e-09;9!UBERON:0000125;8.52e-09;9!UBERON:0007245;8.52e-09;9!UBERON:0002308;8.52e-09;9!UBERON:0010009;8.52e-09;9!UBERON:0010011;8.52e-09;9!UBERON:0000454;8.52e-09;9!UBERON:0000349;1.96e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001875,2.04e-17,2;UBERON:0006514,2.04e-17,2;UBERON:0000178,7.83e-14,15;UBERON:0000179,7.83e-14,15;UBERON:0000463,7.83e-14,15;UBERON:0002240,3.01e-12,3;UBERON:0005174,3.01e-12,3;UBERON:0001137,3.01e-12,3;UBERON:0007023,9.44e-12,114;UBERON:0001049,2.19e-10,56;UBERON:0005068,2.19e-10,56;UBERON:0006241,2.19e-10,56;UBERON:0007135,2.19e-10,56;UBERON:0002390,4.14e-10,98;UBERON:0003061,4.14e-10,98;UBERON:0002784,4.59e-09,4;UBERON:0002193,5.38e-09,108;UBERON:0002420,8.08e-09,9;UBERON:0007245,8.08e-09,9;UBERON:0010009,8.08e-09,9;UBERON:0010011,8.08e-09,9;UBERON:0000454,8.08e-09,9;UBERON:0000125,9.49e-09,9;UBERON:0002308,9.49e-09,9;UBERON:0000349,1.55e-07,5;UBERON:0001017,9.93e-07,81;UBERON:0003075,9.93e-07,82;UBERON:0007284,9.93e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0.647787332037959,1.03030227053675,0,0,0,0.232429036905685,0,0.619412741790207,0.28769239232215,0,0.47296445977717,0.689491361473237,0,1.35426486594342,0,0,0.224723484445085,0,0,0,0.329851300186716,0,0,0,0,0,0.502497330513487,0,0.434377689410233,0,0.368277635987565,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0.148631162288728,0,0,0,0,0,0,0,0.264145302039678,4.97587477297853,3.747118788841,4.29224273649692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.73709131131337,0,12.018049889645,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4423 | |||
|description=CAGE_peak_at_chr4:6919401..6919404,- | |||
|id=chr4:6919401..6919404,- | |||
|ontology_enrichment_celltype=CL:0000766!7.90e-10!76;CL:0000557!7.99e-10!71;CL:0000763!1.51e-08!112;CL:0000049!1.51e-08!112;CL:0000839!5.69e-08!70;CL:0002274!3.90e-07!5;CL:0000457!3.90e-07!5;CL:0002191!3.90e-07!5;CL:0000097!3.90e-07!5;CL:0000831!3.90e-07!5;CL:0002028!3.90e-07!5;CL:0002009!4.36e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0001014;8.08e-18;2!CL:0001016;8.08e-18;2!CL:0000097;4.35e-16;5!CL:0000775;1.15e-12;3!CL:0000094;2.65e-10;8!CL:0000163;3.60e-09;9!CL:0000453;1.15e-07;5!CL:0000081;1.28e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,8.08e-18,2;CL:0001016,8.08e-18,2;CL:0000097,4.25e-16,5;CL:0002028,4.25e-16,5;CL:0000775,1.15e-12,3;CL:0000094,2.57e-10,8;CL:0000163,3.56e-09,9;CL:0000453,1.15e-07,5;CL:0000081,1.25e-07,11 | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.77e-12;3!UBERON:0003057;2.77e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.46e-34!115;UBERON:0001049!1.13e-19!57;UBERON:0005068!1.13e-19!57;UBERON:0006241!1.13e-19!57;UBERON:0007135!1.13e-19!57;UBERON:0002616!6.16e-17!59;UBERON:0002390!4.99e-16!102;UBERON:0003061!4.99e-16!102;UBERON:0002193!1.09e-14!112;UBERON:0001017!2.86e-14!82;UBERON:0000955!3.01e-14!69;UBERON:0006238!3.01e-14!69;UBERON:0005743!3.27e-14!86;UBERON:0003075!2.01e-13!86;UBERON:0007284!2.01e-13!86;UBERON:0002780!1.25e-12!41;UBERON:0001890!1.25e-12!41;UBERON:0006240!1.25e-12!41;UBERON:0002346!1.92e-12!90;UBERON:0003080!3.29e-12!42;UBERON:0000073!4.78e-12!94;UBERON:0001016!4.78e-12!94;UBERON:0002298!3.00e-11!8;UBERON:0002308!2.97e-10!9;UBERON:0000125!2.97e-10!9;UBERON:0002020!4.93e-10!34;UBERON:0003528!4.93e-10!34;UBERON:0000178!1.34e-09!15;UBERON:0000179!1.34e-09!15;UBERON:0000463!1.34e-09!15;UBERON:0001893!1.74e-09!34;UBERON:0003076!2.99e-09!15;UBERON:0003057!2.99e-09!15;UBERON:0002791!1.10e-08!33;UBERON:0002371!5.14e-08!80;UBERON:0001869!9.51e-08!32;UBERON:0003056!1.03e-07!61;UBERON:0002405!1.12e-07!115;UBERON:0002420!1.44e-07!9;UBERON:0007245!1.44e-07!9;UBERON:0010009!1.44e-07!9;UBERON:0010011!1.44e-07!9;UBERON:0000454!1.44e-07!9;UBERON:0004733!4.76e-07!12;UBERON:0002028!4.76e-07!12;UBERON:0007277!4.76e-07!12;UBERON:0001474!4.87e-07!86;UBERON:0009663!6.00e-07!7;UBERON:0006331!7.32e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001875;1.59e-17;2!UBERON:0006514;1.59e-17;2!UBERON:0000178;8.72e-14;15!UBERON:0000179;8.72e-14;15!UBERON:0000463;8.72e-14;15!UBERON:0002240;2.77e-12;3!UBERON:0005174;2.77e-12;3!UBERON:0001137;2.77e-12;3!UBERON:0002784;4.40e-09;4!UBERON:0002420;8.52e-09;9!UBERON:0000125;8.52e-09;9!UBERON:0007245;8.52e-09;9!UBERON:0002308;8.52e-09;9!UBERON:0010009;8.52e-09;9!UBERON:0010011;8.52e-09;9!UBERON:0000454;8.52e-09;9!UBERON:0000349;1.96e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001875,2.04e-17,2;UBERON:0006514,2.04e-17,2;UBERON:0000178,7.83e-14,15;UBERON:0000179,7.83e-14,15;UBERON:0000463,7.83e-14,15;UBERON:0002240,3.01e-12,3;UBERON:0005174,3.01e-12,3;UBERON:0001137,3.01e-12,3;UBERON:0007023,9.44e-12,114;UBERON:0001049,2.19e-10,56;UBERON:0005068,2.19e-10,56;UBERON:0006241,2.19e-10,56;UBERON:0007135,2.19e-10,56;UBERON:0002390,4.14e-10,98;UBERON:0003061,4.14e-10,98;UBERON:0002784,4.59e-09,4;UBERON:0002193,5.38e-09,108;UBERON:0002420,8.08e-09,9;UBERON:0007245,8.08e-09,9;UBERON:0010009,8.08e-09,9;UBERON:0010011,8.08e-09,9;UBERON:0000454,8.08e-09,9;UBERON:0000125,9.49e-09,9;UBERON:0002308,9.49e-09,9;UBERON:0000349,1.55e-07,5;UBERON:0001017,9.93e-07,81;UBERON:0003075,9.93e-07,82;UBERON:0007284,9.93e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0.647787332037959,1.03030227053675,0,0,0,0.232429036905685,0,0.619412741790207,0.28769239232215,0,0.47296445977717,0.689491361473237,0,1.35426486594342,0,0,0.224723484445085,0,0,0,0.329851300186716,0,0,0,0,0,0.502497330513487,0,0.434377689410233,0,0.368277635987565,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0.148631162288728,0,0,0,0,0,0,0,0.264145302039678,4.97587477297853,3.747118788841,4.29224273649692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.73709131131337,0,12.018049889645,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,0.764637207142375,0,0.714695326373367,1.64544909234478,4.53931317834902,2.70015718619057,1.58625035258854,0,0,0,0,0,0,0,0,0.191505370132367,0.846694330895531,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,1.9882952955326,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.331737779793674,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0.104421949505455,0.067401132980677,0,0,0,0,0,0,0,0,0.758238955541855,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0,0,0,2.40168115483916,1.23214841002794,0,0,0,0.558564802544508,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,1.59045937961861,0.272406812223151,0,0,0,1.5748172408605,8.51182150013745,0.182248669974074,0,0.236417121897595,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,1.55139547633861,0.92562821219883,0,0,0,0.314408610199332,0,0.496166021811951,0,0,0,0,0,0.306345576763462,0,0,0,0.488105059607853,0.250381861413,0.573409195690071,0.554645257684261,0.558867626472451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315446980005013,0,0,0,0,0,0.319267718114302,0,0,0,0,0,0,0.353909170043221,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0.496211178389294,0,0,0,1.00885116665647,0,0.455324382702595,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.156986185701028,0.785577949580009,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0.397901550322736,0,0,0,0,0,0.218559560503957,0,0,0,3.14093547383912,2.0793248022896,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0,0.430018749454354,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,1.65833887891756,0.724030971033267,0,0,0.0645889098360061,0.124149428591716,0,0,0.202117188958219,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:6919401..6919404,- | |||
}} |
Revision as of 11:22, 13 September 2013
Short description: | p@chr4:6919401..6919404, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:6919401..6919404, - |
Coexpression cluster: | C4423_Neutrophils_Mast_immature_Whole_Eosinophils_placenta_spinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 8.08e-18 | 2 |
immature CD1a-positive Langerhans cell | 8.08e-18 | 2 |
mast cell | 4.25e-16 | 5 |
basophil mast progenitor cell | 4.25e-16 | 5 |
neutrophil | 1.15e-12 | 3 |
granulocyte | 2.57e-10 | 8 |
endocrine cell | 3.56e-09 | 9 |
Langerhans cell | 1.15e-07 | 5 |
blood cell | 1.25e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
globus pallidus | 2.04e-17 | 2 |
pallidum | 2.04e-17 | 2 |
blood | 7.83e-14 | 15 |
haemolymphatic fluid | 7.83e-14 | 15 |
organism substance | 7.83e-14 | 15 |
spinal cord | 3.01e-12 | 3 |
dorsal region element | 3.01e-12 | 3 |
dorsum | 3.01e-12 | 3 |
adult organism | 9.44e-12 | 114 |
neural tube | 2.19e-10 | 56 |
neural rod | 2.19e-10 | 56 |
future spinal cord | 2.19e-10 | 56 |
neural keel | 2.19e-10 | 56 |
hematopoietic system | 4.14e-10 | 98 |
blood island | 4.14e-10 | 98 |
regional part of diencephalon | 4.59e-09 | 4 |
hemolymphoid system | 5.38e-09 | 108 |
basal ganglion | 8.08e-09 | 9 |
nuclear complex of neuraxis | 8.08e-09 | 9 |
aggregate regional part of brain | 8.08e-09 | 9 |
collection of basal ganglia | 8.08e-09 | 9 |
cerebral subcortex | 8.08e-09 | 9 |
neural nucleus | 9.49e-09 | 9 |
nucleus of brain | 9.49e-09 | 9 |
limbic system | 1.55e-07 | 5 |
central nervous system | 9.93e-07 | 81 |
neural plate | 9.93e-07 | 82 |
presumptive neural plate | 9.93e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.