FFCP PHASE1:Mm9::chr15:98571806..98571818,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=799|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr15:98571806..98571818,-|id=chr15:98571806..98571818,-|ontology_enrichment_celltype=CL:0000117!8.79e-08!23;CL:0000337!8.79e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.11e-11,23;CL:0000337,4.11e-11,23;CL:0002319,6.03e-10,43;CL:0000221,1.27e-09,44;CL:0000133,1.27e-09,44;CL:0002194,2.17e-08,4;CL:0000766,2.17e-08,4;CL:0000234,2.17e-08,4;CL:0000576,2.17e-08,4;CL:0000235,2.17e-08,4;CL:0000864,2.17e-08,4;CL:0002009,2.17e-08,4;CL:0000040,2.17e-08,4;CL:0000559,2.17e-08,4;CL:0000540,6.92e-07,33;CL:0000047,6.92e-07,33;CL:0000031,6.92e-07,33;CL:0000404,6.92e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.38e-18!73;UBERON:0005743!7.38e-18!73;UBERON:0000073!4.44e-17!75;UBERON:0001016!4.44e-17!75;UBERON:0001049!4.81e-17!52;UBERON:0005068!4.81e-17!52;UBERON:0006241!4.81e-17!52;UBERON:0007135!4.81e-17!52;UBERON:0000955!1.07e-16!50;UBERON:0006238!1.07e-16!50;UBERON:0002616!3.90e-16!49;UBERON:0002020!6.65e-14!34;UBERON:0003080!3.50e-13!40;UBERON:0002780!1.06e-12!39;UBERON:0001890!1.06e-12!39;UBERON:0006240!1.06e-12!39;UBERON:0000033!4.99e-12!63;UBERON:0002346!1.52e-11!71;UBERON:0003075!1.52e-11!71;UBERON:0007284!1.52e-11!71;UBERON:0004121!1.89e-11!102;UBERON:0000924!1.89e-11!102;UBERON:0006601!1.89e-11!102;UBERON:0002791!3.08e-11!29;UBERON:0003528!3.08e-11!29;UBERON:0001893!3.08e-11!29;UBERON:0003056!1.39e-10!49;UBERON:0007811!1.48e-09!86;UBERON:0000025!5.39e-09!114;UBERON:0000153!2.35e-08!94;UBERON:0000956!3.20e-08!21;UBERON:0001869!3.20e-08!21;UBERON:0000203!3.20e-08!21;UBERON:0002021!3.29e-08!10;UBERON:0000411!3.29e-08!10;UBERON:0001950!3.29e-08!10;UBERON:0004111!3.34e-08!122;UBERON:0002619!1.39e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.53e-25,34;UBERON:0001017,1.59e-24,73;UBERON:0001016,1.20e-23,75;UBERON:0000073,2.31e-23,54;UBERON:0002021,1.95e-21,10;UBERON:0000411,1.95e-21,10;UBERON:0001950,1.95e-21,10;UBERON:0003528,1.03e-19,29;UBERON:0002791,1.03e-19,29;UBERON:0001893,1.03e-19,29;UBERON:0001049,8.67e-19,52;UBERON:0005068,8.67e-19,52;UBERON:0006241,8.67e-19,52;UBERON:0007135,8.67e-19,52;UBERON:0004121,6.72e-17,95;UBERON:0000924,6.72e-17,95;UBERON:0006601,6.72e-17,95;UBERON:0002619,1.22e-16,17;UBERON:0000955,4.72e-16,47;UBERON:0006238,4.72e-16,47;UBERON:0000956,3.21e-15,21;UBERON:0001869,3.21e-15,21;UBERON:0000203,3.21e-15,21;UBERON:0002616,6.84e-15,46;UBERON:0003080,1.73e-14,40;UBERON:0002346,4.77e-14,64;UBERON:0003075,4.77e-14,64;UBERON:0007284,4.77e-14,64;UBERON:0002780,1.98e-13,39;UBERON:0001890,1.98e-13,39;UBERON:0006240,1.98e-13,39;UBERON:0010371,1.57e-11,73;UBERON:0003056,6.36e-11,49;UBERON:0010314,1.14e-08,92;UBERON:0000025,3.33e-07,114|phase1_expression=0.160148847104794,0,0,0,0,0,0.233612640595526,0.258246646883153,0.563154888606667,0.70219357896598,0,0.239316476986009,0.342401459862411,0.524522414513984,0,0,0,0,0.137114433605739,0,0.425216450755349,0.496454756004426,0,0.159992422793407,0,0,0,0.646413698057667,0,0.504060259519861,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0.588231488031014,0.683045484958446,0.971020706062307,0.377690453926732,0.709638518536602,0.183546752161682,0,1.09012578190223,0.659058548203415,1.1665793944457,1.25987779462826,0,0,0,0,1.02903774414379,0.286533439938757,0,0.606949382578793,1.05798195854407,1.26766280701236,1.0165335962074,1.77858959222228,2.2497492932035,3.9554654502679,0.7104801149461,1.79760066311043,1.92109152660777,0.622137673850866,0.810035629990144,0.210324961351382,1.42825492201902,1.98781686856452,0.122490799214954,0.383381884072945,0,1.10115880999389,2.42605942361857,3.68655679814984,0.791317726381163,1.00636407962651,1.04182674111352,2.51264699101243,1.68828783009504,0.916789486660861,1.17851434189467,2.13557521198654,0.931997229126503,0.075726193333184,0.226714680320357,0,0.860423876981386,0,0,0.649776417447669,0.896053774194671,0.421333260395256,0.681721290312231,0.779358013808606,0.35333957451034,0.281686839553361,0,0,0,0.432982082022428,0.506719730950197,0.505524445014783,0.34255163915718,0.258937883647172,0.742210695324124,0,0.304465478312141,0.230615497256059,0.150722640552623,0.587943535678524,0.125666591329675,0.494389935468748,0.433798070759735,0.884610551949874,0.323533699894818,0.441683036920787,0,0,1.75668478206928,0.83778682725382,0.255457055208591,0,0,0.127070227073065,1.04853447583376,3.66000482254901,0.251308704225729,2.25971616249959,1.79000820131231,0.83115217823824,0.973447578406546,0.407357455401265,0.373220911830279,0.758168275301024,0,0.260240885925407,0.229902104433473,0.360124259610698,0.150704817835715,0.136072998302656,0.2562274405697,0.562210347358373,0.258703370739016,0.215567992932842,0.567318240503458,0,0,0,0.348252166522167,0.411564272815887,0.199034266818493,0,0,0,0,0,0.36012412292203,0,0.590292695242212,0.154267112887378,0.232533944750408,0.268273401399619,0.350296027101508,0.16455984991348,0.328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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=799 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr15:98571806..98571818,- | |||
|id=chr15:98571806..98571818,- | |||
|ontology_enrichment_celltype=CL:0000117!8.79e-08!23;CL:0000337!8.79e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.11e-11,23;CL:0000337,4.11e-11,23;CL:0002319,6.03e-10,43;CL:0000221,1.27e-09,44;CL:0000133,1.27e-09,44;CL:0002194,2.17e-08,4;CL:0000766,2.17e-08,4;CL:0000234,2.17e-08,4;CL:0000576,2.17e-08,4;CL:0000235,2.17e-08,4;CL:0000864,2.17e-08,4;CL:0002009,2.17e-08,4;CL:0000040,2.17e-08,4;CL:0000559,2.17e-08,4;CL:0000540,6.92e-07,33;CL:0000047,6.92e-07,33;CL:0000031,6.92e-07,33;CL:0000404,6.92e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.38e-18!73;UBERON:0005743!7.38e-18!73;UBERON:0000073!4.44e-17!75;UBERON:0001016!4.44e-17!75;UBERON:0001049!4.81e-17!52;UBERON:0005068!4.81e-17!52;UBERON:0006241!4.81e-17!52;UBERON:0007135!4.81e-17!52;UBERON:0000955!1.07e-16!50;UBERON:0006238!1.07e-16!50;UBERON:0002616!3.90e-16!49;UBERON:0002020!6.65e-14!34;UBERON:0003080!3.50e-13!40;UBERON:0002780!1.06e-12!39;UBERON:0001890!1.06e-12!39;UBERON:0006240!1.06e-12!39;UBERON:0000033!4.99e-12!63;UBERON:0002346!1.52e-11!71;UBERON:0003075!1.52e-11!71;UBERON:0007284!1.52e-11!71;UBERON:0004121!1.89e-11!102;UBERON:0000924!1.89e-11!102;UBERON:0006601!1.89e-11!102;UBERON:0002791!3.08e-11!29;UBERON:0003528!3.08e-11!29;UBERON:0001893!3.08e-11!29;UBERON:0003056!1.39e-10!49;UBERON:0007811!1.48e-09!86;UBERON:0000025!5.39e-09!114;UBERON:0000153!2.35e-08!94;UBERON:0000956!3.20e-08!21;UBERON:0001869!3.20e-08!21;UBERON:0000203!3.20e-08!21;UBERON:0002021!3.29e-08!10;UBERON:0000411!3.29e-08!10;UBERON:0001950!3.29e-08!10;UBERON:0004111!3.34e-08!122;UBERON:0002619!1.39e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.53e-25,34;UBERON:0001017,1.59e-24,73;UBERON:0001016,1.20e-23,75;UBERON:0000073,2.31e-23,54;UBERON:0002021,1.95e-21,10;UBERON:0000411,1.95e-21,10;UBERON:0001950,1.95e-21,10;UBERON:0003528,1.03e-19,29;UBERON:0002791,1.03e-19,29;UBERON:0001893,1.03e-19,29;UBERON:0001049,8.67e-19,52;UBERON:0005068,8.67e-19,52;UBERON:0006241,8.67e-19,52;UBERON:0007135,8.67e-19,52;UBERON:0004121,6.72e-17,95;UBERON:0000924,6.72e-17,95;UBERON:0006601,6.72e-17,95;UBERON:0002619,1.22e-16,17;UBERON:0000955,4.72e-16,47;UBERON:0006238,4.72e-16,47;UBERON:0000956,3.21e-15,21;UBERON:0001869,3.21e-15,21;UBERON:0000203,3.21e-15,21;UBERON:0002616,6.84e-15,46;UBERON:0003080,1.73e-14,40;UBERON:0002346,4.77e-14,64;UBERON:0003075,4.77e-14,64;UBERON:0007284,4.77e-14,64;UBERON:0002780,1.98e-13,39;UBERON:0001890,1.98e-13,39;UBERON:0006240,1.98e-13,39;UBERON:0010371,1.57e-11,73;UBERON:0003056,6.36e-11,49;UBERON:0010314,1.14e-08,92;UBERON:0000025,3.33e-07,114 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0.233612640595526,0.258246646883153,0.563154888606667,0.70219357896598,0,0.239316476986009,0.342401459862411,0.524522414513984,0,0,0,0,0.137114433605739,0,0.425216450755349,0.496454756004426,0,0.159992422793407,0,0,0,0.646413698057667,0,0.504060259519861,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0.588231488031014,0.683045484958446,0.971020706062307,0.377690453926732,0.709638518536602,0.183546752161682,0,1.09012578190223,0.659058548203415,1.1665793944457,1.25987779462826,0,0,0,0,1.02903774414379,0.286533439938757,0,0.606949382578793,1.05798195854407,1.26766280701236,1.0165335962074,1.77858959222228,2.2497492932035,3.9554654502679,0.7104801149461,1.79760066311043,1.92109152660777,0.622137673850866,0.810035629990144,0.210324961351382,1.42825492201902,1.98781686856452,0.122490799214954,0.383381884072945,0,1.10115880999389,2.42605942361857,3.68655679814984,0.791317726381163,1.00636407962651,1.04182674111352,2.51264699101243,1.68828783009504,0.916789486660861,1.17851434189467,2.13557521198654,0.931997229126503,0.075726193333184,0.226714680320357,0,0.860423876981386,0,0,0.649776417447669,0.896053774194671,0.421333260395256,0.681721290312231,0.779358013808606,0.35333957451034,0.281686839553361,0,0,0,0.432982082022428,0.506719730950197,0.505524445014783,0.34255163915718,0.258937883647172,0.742210695324124,0,0.304465478312141,0.230615497256059,0.150722640552623,0.587943535678524,0.125666591329675,0.494389935468748,0.433798070759735,0.884610551949874,0.323533699894818,0.441683036920787,0,0,1.75668478206928,0.83778682725382,0.255457055208591,0,0,0.127070227073065,1.04853447583376,3.66000482254901,0.251308704225729,2.25971616249959,1.79000820131231,0.83115217823824,0.973447578406546,0.407357455401265,0.373220911830279,0.758168275301024,0,0.260240885925407,0.229902104433473,0.360124259610698,0.150704817835715,0.136072998302656,0.2562274405697,0.562210347358373,0.258703370739016,0.215567992932842,0.567318240503458,0,0,0,0.348252166522167,0.411564272815887,0.199034266818493,0,0,0,0,0,0.36012412292203,0,0.590292695242212,0.154267112887378,0.232533944750408,0.268273401399619,0.350296027101508,0.16455984991348,0.32833492815819,0.162137619091711,0.292399974850665,0.219550115291051,0,3.99550902271842,0.92614151141356,0,0.528901133327089,0,0.232236671860439,0.257734922644187,0,0.667134131534611,0.380451252225118,0,0.658795818896044,0.251335208800269,0,0.19496408711912,0.898819408654221,0.216138049874694,0,0.569003702859245,0.456994050438915,0,0.203651327845314,0.775809948670503,0.350679099451593,0.0632365371242573,0,1.09899109488962,0.123397163921801,0.296452627087149,0,0,0.224862112384854,0.202860121388503,0,0.25462585178142,0,0.648540907100142,0.274561413188081,1.43768206527355,0.744281895337007,0.312037673114561,0.505157755894224,0,0,0.184753190166605,0.189491411770485,0.325929952884052,0.169745085775188,0.469380496577004,0.167506257441816,0.476087281772027,0.195133647857799,0,0.44292937929755,0.318909537314974,1.47476983244164,0.518054945597687,0.433947175744535,3.01582567878545,1.63171705145613,0,0.275936746304732,0.963303539926752,0.586058432961016,0.327869890753351,0,0,0,0.215423397732799,0.477937595905104,0.445597348164788,0,0,0.292255857911312,0.790575555893047,1.60660658210904,0.425820255624806,0.178065603667255,0.162886959353576,0.164970122972535,0,0,0.302323556964751,0.377210159511796,0.295301892880773,0,0.258428293168221,0.727067458955011,0.356497378384721,0,0,0,0.680879211507576,0.18006109403131,0.388076051348264,0.214337035031592,0.886701168211368,0.713475270408282,0.658196082408484,0.913394847343798,0,0.21183207086382,0,0.49465875882444,0.161464426695906,0.361877549568935,0,0,0.874442509889552,0.370850604021019,0.170870880797853,0,0.370389054739423,0,0.27338845544205,0,0.169978429993855,0.139951452323658,0.138199973804424,0,0,0,0.432021363287205,1.04544148007234,0,0.404593039154462,0.165306911450672,1.04702376793612,0.518459893167171,0,0.56369293868419,0.448549638131936,0,0.583353565032143,0.258319646955462,0.844780627453891,0.352071715937262,0.2604087696879,0.209718688851422,0.241584120826006,0.288030006257865,0,0.405450430580328,0.616265742988964,0.25984164595559,0,0.198681354781265,0.120195449519969,0.443068581523732,0.403865799792591,0.0762068066549998,0.705783295957884,0.292373642219257,0.865906574762965,0.584384510907845,0,0.221985953374065,0.448569283047378,0.167884616364078,0.386379188064381,0.187682475451182,0.183151624267265,0.857473516316263,0.501572104035363,3.95326289831947,1.84130094602871,5.15605962095457,3.78077001156113,4.11049511862385,4.5323633843382,4.05013500139084,3.60256962579376,4.07828168085784,5.69536342927002,0.31136204275253,0,0,0.243106717068294,0,0.367687016900028,0.222246727801615,0.206035057238894,0.320919209591815,0.758091635291392,0.25347929989024,0,0.187283014939765,0.192075457214608,0.34461281373368,0,0,0.38581844092741,0.412085900803307,0.441596760403192,0.342869252385415,0,0.238436189947321,0.14534641663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| |||
|short_description=p@chr15:98571806..98571818,- | |||
}} |
Revision as of 11:50, 13 September 2013
Short description: | p@chr15:98571806..98571818, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:98571806..98571818, - |
Coexpression cluster: | MCL_coexpression_mm9:799 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.11e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.11e-11 | 23 |
neural cell | 6.03e-10 | 43 |
ectodermal cell | 1.27e-09 | 44 |
neurectodermal cell | 1.27e-09 | 44 |
monopoietic cell | 2.17e-08 | 4 |
myeloid leukocyte | 2.17e-08 | 4 |
phagocyte | 2.17e-08 | 4 |
monocyte | 2.17e-08 | 4 |
macrophage | 2.17e-08 | 4 |
tissue-resident macrophage | 2.17e-08 | 4 |
macrophage dendritic cell progenitor | 2.17e-08 | 4 |
monoblast | 2.17e-08 | 4 |
promonocyte | 2.17e-08 | 4 |
neuron | 6.92e-07 | 33 |
neuronal stem cell | 6.92e-07 | 33 |
neuroblast | 6.92e-07 | 33 |
electrically signaling cell | 6.92e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
gray matter | 8.53e-25 | 34 |
central nervous system | 1.59e-24 | 73 |
nervous system | 1.20e-23 | 75 |
regional part of nervous system | 2.31e-23 | 54 |
occipital lobe | 1.95e-21 | 10 |
visual cortex | 1.95e-21 | 10 |
neocortex | 1.95e-21 | 10 |
brain grey matter | 1.03e-19 | 29 |
regional part of telencephalon | 1.03e-19 | 29 |
telencephalon | 1.03e-19 | 29 |
neural tube | 8.67e-19 | 52 |
neural rod | 8.67e-19 | 52 |
future spinal cord | 8.67e-19 | 52 |
neural keel | 8.67e-19 | 52 |
ectoderm-derived structure | 6.72e-17 | 95 |
ectoderm | 6.72e-17 | 95 |
presumptive ectoderm | 6.72e-17 | 95 |
regional part of cerebral cortex | 1.22e-16 | 17 |
brain | 4.72e-16 | 47 |
future brain | 4.72e-16 | 47 |
cerebral cortex | 3.21e-15 | 21 |
cerebral hemisphere | 3.21e-15 | 21 |
pallium | 3.21e-15 | 21 |
regional part of brain | 6.84e-15 | 46 |
anterior neural tube | 1.73e-14 | 40 |
neurectoderm | 4.77e-14 | 64 |
neural plate | 4.77e-14 | 64 |
presumptive neural plate | 4.77e-14 | 64 |
regional part of forebrain | 1.98e-13 | 39 |
forebrain | 1.98e-13 | 39 |
future forebrain | 1.98e-13 | 39 |
ecto-epithelium | 1.57e-11 | 73 |
pre-chordal neural plate | 6.36e-11 | 49 |
structure with developmental contribution from neural crest | 1.14e-08 | 92 |
tube | 3.33e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.