FFCP PHASE1:Mm9::chr17:29430984..29431005,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=274|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:29430984..29431005,+|id=chr17:29430984..29431005,+|ontology_enrichment_celltype=CL:0002563!7.38e-08!9;CL:0002251!7.38e-08!9|ontology_enrichment_celltype_v019_2=CL:0000239,5.30e-18,6;CL:0000677,5.30e-18,6;CL:0000584,5.30e-18,6;CL:0000075,2.44e-15,7;CL:0002563,8.73e-12,9;CL:0002251,8.73e-12,9;CL:0000066,2.28e-10,25;CL:0000682,3.82e-10,3;CL:0002076,6.63e-09,15;CL:0000473,4.19e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!9.17e-15!43;UBERON:0005409!3.34e-14!59;UBERON:0000344!5.12e-13!15;UBERON:0001242!2.51e-11!13;UBERON:0000060!2.51e-11!13;UBERON:0001262!2.51e-11!13;UBERON:0004786!2.51e-11!13;UBERON:0004923!5.40e-09!24;UBERON:0003350!7.38e-08!9;UBERON:0004808!7.38e-08!9;UBERON:0001277!7.38e-08!9;UBERON:0004119!1.10e-07!130;UBERON:0000925!1.10e-07!130;UBERON:0006595!1.10e-07!130;UBERON:0001007!1.20e-07!128;UBERON:0001555!1.20e-07!128;UBERON:0007026!1.20e-07!128;UBERON:0004921!8.90e-07!126;UBERON:0004185!8.90e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.55e-38,31;UBERON:0000344,1.43e-27,15;UBERON:0005409,3.68e-26,47;UBERON:0001242,3.06e-22,13;UBERON:0001262,3.06e-22,13;UBERON:0004786,3.06e-22,13;UBERON:0004923,2.76e-16,24;UBERON:0002108,4.24e-13,4;UBERON:0003350,8.73e-12,9;UBERON:0004808,8.73e-12,9;UBERON:0001277,8.73e-12,9;UBERON:0001007,5.28e-11,116;UBERON:0001555,5.28e-11,116;UBERON:0007026,5.28e-11,116;UBERON:0004119,9.92e-11,118;UBERON:0000925,9.92e-11,118;UBERON:0006595,9.92e-11,118;UBERON:0000331,2.18e-10,3;UBERON:0002116,2.18e-10,3;UBERON:0001204,2.18e-10,3;UBERON:0001168,2.18e-10,3;UBERON:0000485,1.61e-09,11;UBERON:0004921,5.42e-09,114;UBERON:0001962,4.31e-07,2;UBERON:0001961,4.31e-07,2;UBERON:0001744,4.31e-07,2|phase1_expression=0,2.09385244583617,1.81999695755814,4.53696316960245,2.50447864973174,7.55456723603504,5.84031601488814,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0,0.137114433605739,0.42438965179803,0.0850432901510698,0,0,3.19984845586813,3.89995777814189,5.16808767703518,4.30761996159075,3.23206849028834,6.46079626151671,4.53654233567875,3.99114919179548,0,0,0,0.577703239502549,0.831173226792462,0.204169356262369,0,0,0,0,0,0,0,0.202753862439029,0.367093504323363,0,0.65407546914134,0,0.777719596297134,0.279972843250725,0,0,0,0,0,0,0,0.202316460859598,1.05798195854407,0,0,0,0,0,0,0,1.15265491596466,0.103689612308478,0.270011876663381,0.210324961351382,0,0,0.122490799214954,0.0958454710182364,0,0,0,0,0.131886287730194,0.182975287204819,0.52091337055676,0,0,0.15279824777681,0,0.284743361598206,0,0,0,0,0,0,0,0.649776417447669,0,0,0,0,0.35333957451034,0,0,0,0,0.432982082022428,0,1.01104889002957,0.22836775943812,0,0,0.520455980298408,0,0,0,0.117588707135705,0.251333182659351,0,0.433798070759735,0,0.161766849947409,0,0.484875253135222,0,0,0.41889341362691,3.57639877292028,0.11981512450592,0,0.127070227073065,0,0,0,0,0,0,0.162241263067758,0,0,0,0,0,0,0,0.150704817835715,0.0680364991513279,0,0.0937017245597288,0,0,0.189106080167819,0,0.219195732427575,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,0,0,2.97376904685418,2.64450566663544,0,0,0.38660238396628,0.80673409849337,0.889512175379481,2.66315876557583,1.42358718463353,1.4822905925161,2.26201687920243,1.1937388322469,0.974820435595601,3.59527763461689,2.37751854862164,1.59313018603494,0,0,0,0,0,0,0,0.442830443938806,0,0.246794327843601,0,0,0,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0,0,0,0.624075346229121,0.252578877947112,0.179397413521912,0,0.184753190166605,0,0.162964976442026,0,0,0,0,0,0,0,0,0.327726629431476,0.172684981865896,0,0,0.54390568381871,0,0.275936746304732,0,0,0,0,0,0,0.215423397732799,0.238968797952552,0,0,0.404810701674894,0,0,0,0.141940085208269,0,0,0,0,0.242780636154981,0,0,0,0,0.775284879504663,0,0,0.316036757935816,0,1.03135543248187,0,0,0.129358683782755,0,0.177340233642274,0,0.164549020602121,0,0,0.21183207086382,0,0,0,0.0603129249281559,0,0,3.49777003955821,0.18542530201051,0.170870880797853,0.206386867963223,0,0,0.136694227721025,0,0,0,0,0,0.158167996790568,0,0.216010681643603,0,0.436725127492355,0.539457385539283,0,0.523511883968059,1.03691978633434,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0.25984164595559,0.179026695667481,0.198681354781265,0,0.295379054349154,0,0.0762068066549998,0,0.0974578807397524,0,0,0.226730383615211,0,0.179427713218951,0,0,0,0.549454872801795,0,0,0,0,0,0,0,0,0,0,0.453142408984205,0.51776031175182,0,0,0,0,0,0.183843508450014,0.44449345560323,0.206035057238894,0,0,0,0,0,0,0.0574354689556133,0,0,0.38581844092741,0,0.294397840268795,0,0.70990322463735,0,0,0.0941093804153306,0,0,0,0.543216455383447,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0|short_description=p@chr17:29430984..29431005,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=274 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:29430984..29431005,+ | |||
|id=chr17:29430984..29431005,+ | |||
|ontology_enrichment_celltype=CL:0002563!7.38e-08!9;CL:0002251!7.38e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,5.30e-18,6;CL:0000677,5.30e-18,6;CL:0000584,5.30e-18,6;CL:0000075,2.44e-15,7;CL:0002563,8.73e-12,9;CL:0002251,8.73e-12,9;CL:0000066,2.28e-10,25;CL:0000682,3.82e-10,3;CL:0002076,6.63e-09,15;CL:0000473,4.19e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!9.17e-15!43;UBERON:0005409!3.34e-14!59;UBERON:0000344!5.12e-13!15;UBERON:0001242!2.51e-11!13;UBERON:0000060!2.51e-11!13;UBERON:0001262!2.51e-11!13;UBERON:0004786!2.51e-11!13;UBERON:0004923!5.40e-09!24;UBERON:0003350!7.38e-08!9;UBERON:0004808!7.38e-08!9;UBERON:0001277!7.38e-08!9;UBERON:0004119!1.10e-07!130;UBERON:0000925!1.10e-07!130;UBERON:0006595!1.10e-07!130;UBERON:0001007!1.20e-07!128;UBERON:0001555!1.20e-07!128;UBERON:0007026!1.20e-07!128;UBERON:0004921!8.90e-07!126;UBERON:0004185!8.90e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.55e-38,31;UBERON:0000344,1.43e-27,15;UBERON:0005409,3.68e-26,47;UBERON:0001242,3.06e-22,13;UBERON:0001262,3.06e-22,13;UBERON:0004786,3.06e-22,13;UBERON:0004923,2.76e-16,24;UBERON:0002108,4.24e-13,4;UBERON:0003350,8.73e-12,9;UBERON:0004808,8.73e-12,9;UBERON:0001277,8.73e-12,9;UBERON:0001007,5.28e-11,116;UBERON:0001555,5.28e-11,116;UBERON:0007026,5.28e-11,116;UBERON:0004119,9.92e-11,118;UBERON:0000925,9.92e-11,118;UBERON:0006595,9.92e-11,118;UBERON:0000331,2.18e-10,3;UBERON:0002116,2.18e-10,3;UBERON:0001204,2.18e-10,3;UBERON:0001168,2.18e-10,3;UBERON:0000485,1.61e-09,11;UBERON:0004921,5.42e-09,114;UBERON:0001962,4.31e-07,2;UBERON:0001961,4.31e-07,2;UBERON:0001744,4.31e-07,2 | |||
|phase1_expression=0,2.09385244583617,1.81999695755814,4.53696316960245,2.50447864973174,7.55456723603504,5.84031601488814,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0,0.137114433605739,0.42438965179803,0.0850432901510698,0,0,3.19984845586813,3.89995777814189,5.16808767703518,4.30761996159075,3.23206849028834,6.46079626151671,4.53654233567875,3.99114919179548,0,0,0,0.577703239502549,0.831173226792462,0.204169356262369,0,0,0,0,0,0,0,0.202753862439029,0.367093504323363,0,0.65407546914134,0,0.777719596297134,0.279972843250725,0,0,0,0,0,0,0,0.202316460859598,1.05798195854407,0,0,0,0,0,0,0,1.15265491596466,0.103689612308478,0.270011876663381,0.210324961351382,0,0,0.122490799214954,0.0958454710182364,0,0,0,0,0.131886287730194,0.182975287204819,0.52091337055676,0,0,0.15279824777681,0,0.284743361598206,0,0,0,0,0,0,0,0.649776417447669,0,0,0,0,0.35333957451034,0,0,0,0,0.432982082022428,0,1.01104889002957,0.22836775943812,0,0,0.520455980298408,0,0,0,0.117588707135705,0.251333182659351,0,0.433798070759735,0,0.161766849947409,0,0.484875253135222,0,0,0.41889341362691,3.57639877292028,0.11981512450592,0,0.127070227073065,0,0,0,0,0,0,0.162241263067758,0,0,0,0,0,0,0,0.150704817835715,0.0680364991513279,0,0.0937017245597288,0,0,0.189106080167819,0,0.219195732427575,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,0,0,2.97376904685418,2.64450566663544,0,0,0.38660238396628,0.80673409849337,0.889512175379481,2.66315876557583,1.42358718463353,1.4822905925161,2.26201687920243,1.1937388322469,0.974820435595601,3.59527763461689,2.37751854862164,1.59313018603494,0,0,0,0,0,0,0,0.442830443938806,0,0.246794327843601,0,0,0,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0,0,0,0.624075346229121,0.252578877947112,0.179397413521912,0,0.184753190166605,0,0.162964976442026,0,0,0,0,0,0,0,0,0.327726629431476,0.172684981865896,0,0,0.54390568381871,0,0.275936746304732,0,0,0,0,0,0,0.215423397732799,0.238968797952552,0,0,0.404810701674894,0,0,0,0.141940085208269,0,0,0,0,0.242780636154981,0,0,0,0,0.775284879504663,0,0,0.316036757935816,0,1.03135543248187,0,0,0.129358683782755,0,0.177340233642274,0,0.164549020602121,0,0,0.21183207086382,0,0,0,0.0603129249281559,0,0,3.49777003955821,0.18542530201051,0.170870880797853,0.206386867963223,0,0,0.136694227721025,0,0,0,0,0,0.158167996790568,0,0.216010681643603,0,0.436725127492355,0.539457385539283,0,0.523511883968059,1.03691978633434,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0.25984164595559,0.179026695667481,0.198681354781265,0,0.295379054349154,0,0.0762068066549998,0,0.0974578807397524,0,0,0.226730383615211,0,0.179427713218951,0,0,0,0.549454872801795,0,0,0,0,0,0,0,0,0,0,0.453142408984205,0.51776031175182,0,0,0,0,0,0.183843508450014,0.44449345560323,0.206035057238894,0,0,0,0,0,0,0.0574354689556133,0,0,0.38581844092741,0,0.294397840268795,0,0.70990322463735,0,0,0.0941093804153306,0,0,0,0.543216455383447,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0 | |||
|short_description=p@chr17:29430984..29431005,+ | |||
}} |
Revision as of 13:59, 13 September 2013
Short description: | p@chr17:29430984..29431005, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:29430984..29431005, + |
Coexpression cluster: | MCL_coexpression_mm9:274 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 5.30e-18 | 6 |
gut absorptive cell | 5.30e-18 | 6 |
enterocyte | 5.30e-18 | 6 |
columnar/cuboidal epithelial cell | 2.44e-15 | 7 |
intestinal epithelial cell | 8.73e-12 | 9 |
epithelial cell of alimentary canal | 8.73e-12 | 9 |
epithelial cell | 2.28e-10 | 25 |
M cell of gut | 3.82e-10 | 3 |
endo-epithelial cell | 6.63e-09 | 15 |
defensive cell | 4.19e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.55e-38 | 31 |
mucosa | 1.43e-27 | 15 |
gastrointestinal system | 3.68e-26 | 47 |
intestinal mucosa | 3.06e-22 | 13 |
wall of intestine | 3.06e-22 | 13 |
gastrointestinal system mucosa | 3.06e-22 | 13 |
organ component layer | 2.76e-16 | 24 |
small intestine | 4.24e-13 | 4 |
epithelium of mucosa | 8.73e-12 | 9 |
gastrointestinal system epithelium | 8.73e-12 | 9 |
intestinal epithelium | 8.73e-12 | 9 |
digestive system | 5.28e-11 | 116 |
digestive tract | 5.28e-11 | 116 |
primitive gut | 5.28e-11 | 116 |
endoderm-derived structure | 9.92e-11 | 118 |
endoderm | 9.92e-11 | 118 |
presumptive endoderm | 9.92e-11 | 118 |
ileal mucosa | 2.18e-10 | 3 |
ileum | 2.18e-10 | 3 |
mucosa of small intestine | 2.18e-10 | 3 |
wall of small intestine | 2.18e-10 | 3 |
simple columnar epithelium | 1.61e-09 | 11 |
subdivision of digestive tract | 5.42e-09 | 114 |
gut-associated lymphoid tissue | 4.31e-07 | 2 |
mucosa-associated lymphoid tissue | 4.31e-07 | 2 |
lymphoid tissue | 4.31e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.