FFCP PHASE1:Hg19::chr5:73109339..73109409,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64283|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=S|UniProt=B5MDA3|association_with_transcript=0bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end|coexpression_cluster_id=C4518|description=CAGE_peak_2_at_RGNEF_5end|id=chr5:73109339..73109409,+|ontology_enrichment_celltype=CL:1000497!6.99e-07!18;CL:0002518!6.99e-07!18;CL:0002077!9.44e-07!33|ontology_enrichment_celltype_v019=CL:1000497;5.35e-11;17!CL:0002518;5.35e-11;17!CL:1000507;2.79e-10;10!CL:1000494;2.79e-10;10!CL:1000449;9.81e-09;15!CL:0002681;1.70e-07;12!CL:0002584;1.70e-07;12|ontology_enrichment_celltype_v019_2=CL:1000497,4.64e-11,17;CL:0002518,4.64e-11,17;CL:1000507,2.69e-10,10;CL:1000494,2.69e-10,10;CL:1000449,8.62e-09,15;CL:0000066,1.16e-07,253;CL:0002681,1.47e-07,12;CL:0002584,1.47e-07,12;CL:0002076,2.62e-07,42;CL:0000223,9.16e-07,58;CL:0000075,9.88e-07,27|ontology_enrichment_development_v019=UBERON:0005795;4.25e-07;10|ontology_enrichment_disease=DOID:120!1.19e-12!27;DOID:193!3.91e-11!29;DOID:2394!2.13e-10!14|ontology_enrichment_disease_v019=DOID:120;7.48e-15;27!DOID:193;2.34e-13;29!DOID:2394;2.72e-11;14|ontology_enrichment_disease_v019_2=DOID:120,7.66e-15,27;DOID:193,2.39e-13,29;DOID:2394,3.66e-11,14|ontology_enrichment_uberon=UBERON:0003133!1.67e-12!48;UBERON:0005156!2.43e-12!59;UBERON:0000990!2.43e-12!59;UBERON:0003100!9.40e-12!41;UBERON:0003134!1.17e-10!37;UBERON:0000474!1.17e-10!37;UBERON:0000489!1.28e-10!32;UBERON:0001008!4.93e-10!45;UBERON:0006554!1.43e-09!44;UBERON:0002113!3.18e-09!27;UBERON:0003918!3.18e-09!27;UBERON:0005095!3.18e-09!27;UBERON:0007687!3.18e-09!27;UBERON:0000475!8.98e-09!365;UBERON:0004876!4.65e-08!20;UBERON:0003886!1.22e-07!63;UBERON:0004175!1.59e-07!25;UBERON:0000922!2.18e-07!612;UBERON:0000464!3.73e-07!104;UBERON:0002050!5.96e-07!605;UBERON:0005423!5.96e-07!605;UBERON:0002553!6.60e-07!70;UBERON:0000992!8.75e-07!13|ontology_enrichment_uberon_v019=UBERON:0003134;1.37e-13;33!UBERON:0000489;1.07e-12;29!UBERON:0004175;2.51e-12;21!UBERON:0003133;3.11e-12;44!UBERON:0003100;4.96e-11;41!UBERON:0006554;7.55e-11;30!UBERON:0001008;7.55e-11;30!UBERON:0002113;1.06e-10;24!UBERON:0011143;1.06e-10;24!UBERON:0004211;2.79e-10;10!UBERON:0009773;2.79e-10;10!UBERON:0001231;2.79e-10;10!UBERON:0004810;2.79e-10;10!UBERON:0000474;4.84e-10;37!UBERON:0003975;1.97e-09;18!UBERON:0005156;2.00e-09;59!UBERON:0000990;2.00e-09;59!UBERON:0006555;9.81e-09;15!UBERON:0004819;9.81e-09;15!UBERON:0001285;9.81e-09;15!UBERON:0007684;9.81e-09;15!UBERON:0000995;1.02e-08;17!UBERON:0000991;1.03e-07;21!UBERON:0001225;1.70e-07;12!UBERON:0008987;1.70e-07;12!UBERON:0000992;4.42e-07;13|ontology_enrichment_uberon_v019_2=UBERON:0003133,4.16e-16,48;UBERON:0005156,2.29e-15,59;UBERON:0000990,2.29e-15,59;UBERON:0000489,6.63e-15,31;UBERON:0003100,1.90e-14,41;UBERON:0003134,9.94e-13,37;UBERON:0000474,9.94e-13,37;UBERON:0002113,1.02e-12,26;UBERON:0003918,1.02e-12,26;UBERON:0011143,1.02e-12,26;UBERON:0005095,1.02e-12,26;UBERON:0007687,1.02e-12,26;UBERON:0001008,8.28e-11,48;UBERON:0004810,2.69e-10,10;UBERON:0006554,3.24e-10,47;UBERON:0006555,7.87e-10,16;UBERON:0004819,7.87e-10,16;UBERON:0004175,1.18e-09,25;UBERON:0004211,8.62e-09,15;UBERON:0009773,8.62e-09,15;UBERON:0001231,8.62e-09,15;UBERON:0001285,8.62e-09,15;UBERON:0007684,8.62e-09,15;UBERON:0004208,8.62e-09,15;UBERON:0003886,3.28e-08,54;UBERON:0000991,9.72e-08,21;UBERON:0009196,9.72e-08,21;UBERON:0009117,9.72e-08,21;UBERON:0005564,9.72e-08,21;UBERON:0002417,1.05e-07,60;UBERON:0000916,1.05e-07,60;UBERON:0001225,1.47e-07,12;UBERON:0008987,1.47e-07,12;UBERON:0003103,2.80e-07,68;UBERON:0002553,2.80e-07,61;UBERON:0004176,3.21e-07,22;UBERON:0005795,3.70e-07,22;UBERON:0003975,4.00e-07,22;UBERON:0000992,4.41e-07,13|phase1_expression=0.181678379270557,0,6.90676580070259,0,1.34088328328186,1.74467704820074,0,0,0.261185628199839,2.21160542851358,0,0,0,0.618831764800233,1.32558950291166,0.672325146451775,0,0,0,0.123121058076788,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,2.00535164254356,4.77993512570718,7.15757352345989,0.973269740605272,1.41802225746102,1.77383517970051,1.58102614247627,7.85874452986276,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,4.47274756525787,0,1.19168262731897,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612975591598039,0.150238058906597,0.113432183160021,0.179389635688862,0,0.211931901159562,0,0,0,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0.339121184620975,0.193260853163297,1.09098448236334,1.14721838155602,0.121973706129595,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05861847192275,3.60292401626904,1.53650399572076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569,1.42838658878244,3.55239004098034,7.8214140012781,0,0.381882949668989,0.202117188958219,3.04803447055746,3.42233301085281,2.62673006756891,4.51849893973861,1.66330178273007,0,0,0,5.12003652007545,0,9.77931553462932,3.25516942652591,2.66302709674205,1.81146414231924,0|short_description=p2@RGNEF}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=64283 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt=B5MDA3 | |||
|association_with_transcript=0bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end | |||
|coexpression_cluster_id=C4518 | |||
|description=CAGE_peak_2_at_RGNEF_5end | |||
|id=chr5:73109339..73109409,+ | |||
|ontology_enrichment_celltype=CL:1000497!6.99e-07!18;CL:0002518!6.99e-07!18;CL:0002077!9.44e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.35e-11;17!CL:0002518;5.35e-11;17!CL:1000507;2.79e-10;10!CL:1000494;2.79e-10;10!CL:1000449;9.81e-09;15!CL:0002681;1.70e-07;12!CL:0002584;1.70e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,4.64e-11,17;CL:0002518,4.64e-11,17;CL:1000507,2.69e-10,10;CL:1000494,2.69e-10,10;CL:1000449,8.62e-09,15;CL:0000066,1.16e-07,253;CL:0002681,1.47e-07,12;CL:0002584,1.47e-07,12;CL:0002076,2.62e-07,42;CL:0000223,9.16e-07,58;CL:0000075,9.88e-07,27 | |||
|ontology_enrichment_development_v019=UBERON:0005795;4.25e-07;10 | |||
|ontology_enrichment_disease=DOID:120!1.19e-12!27;DOID:193!3.91e-11!29;DOID:2394!2.13e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:120;7.48e-15;27!DOID:193;2.34e-13;29!DOID:2394;2.72e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:120,7.66e-15,27;DOID:193,2.39e-13,29;DOID:2394,3.66e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0003133!1.67e-12!48;UBERON:0005156!2.43e-12!59;UBERON:0000990!2.43e-12!59;UBERON:0003100!9.40e-12!41;UBERON:0003134!1.17e-10!37;UBERON:0000474!1.17e-10!37;UBERON:0000489!1.28e-10!32;UBERON:0001008!4.93e-10!45;UBERON:0006554!1.43e-09!44;UBERON:0002113!3.18e-09!27;UBERON:0003918!3.18e-09!27;UBERON:0005095!3.18e-09!27;UBERON:0007687!3.18e-09!27;UBERON:0000475!8.98e-09!365;UBERON:0004876!4.65e-08!20;UBERON:0003886!1.22e-07!63;UBERON:0004175!1.59e-07!25;UBERON:0000922!2.18e-07!612;UBERON:0000464!3.73e-07!104;UBERON:0002050!5.96e-07!605;UBERON:0005423!5.96e-07!605;UBERON:0002553!6.60e-07!70;UBERON:0000992!8.75e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0003134;1.37e-13;33!UBERON:0000489;1.07e-12;29!UBERON:0004175;2.51e-12;21!UBERON:0003133;3.11e-12;44!UBERON:0003100;4.96e-11;41!UBERON:0006554;7.55e-11;30!UBERON:0001008;7.55e-11;30!UBERON:0002113;1.06e-10;24!UBERON:0011143;1.06e-10;24!UBERON:0004211;2.79e-10;10!UBERON:0009773;2.79e-10;10!UBERON:0001231;2.79e-10;10!UBERON:0004810;2.79e-10;10!UBERON:0000474;4.84e-10;37!UBERON:0003975;1.97e-09;18!UBERON:0005156;2.00e-09;59!UBERON:0000990;2.00e-09;59!UBERON:0006555;9.81e-09;15!UBERON:0004819;9.81e-09;15!UBERON:0001285;9.81e-09;15!UBERON:0007684;9.81e-09;15!UBERON:0000995;1.02e-08;17!UBERON:0000991;1.03e-07;21!UBERON:0001225;1.70e-07;12!UBERON:0008987;1.70e-07;12!UBERON:0000992;4.42e-07;13 | |||
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| |||
|short_description=p2@RGNEF | |||
}} |
Revision as of 16:22, 13 September 2013
Short description: | p2@RGNEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RGNEF_5end |
Coexpression cluster: | C4518_Renal_renal_serous_kidney_Sertoli_mesothelioma_mesenchymal |
Association with transcript: | 0bp_to_ENST00000296799, NM_001244364, uc011csr.1_5end |
EntrezGene: | RGNEF |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 4.64e-11 | 17 |
kidney epithelial cell | 4.64e-11 | 17 |
kidney tubule cell | 2.69e-10 | 10 |
nephron tubule epithelial cell | 2.69e-10 | 10 |
epithelial cell of nephron | 8.62e-09 | 15 |
epithelial cell | 1.16e-07 | 253 |
kidney cortical cell | 1.47e-07 | 12 |
renal cortical epithelial cell | 1.47e-07 | 12 |
endo-epithelial cell | 2.62e-07 | 42 |
endodermal cell | 9.16e-07 | 58 |
columnar/cuboidal epithelial cell | 9.88e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 7.66e-15 | 27 |
reproductive organ cancer | 2.39e-13 | 29 |
ovarian cancer | 3.66e-11 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.