FFCP PHASE1:Mm9::chr1:127809707..127809726,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72585|HGNC=|MCL_coexpression_id=1|UniProt=F6TKE8|association_with_transcript=-29bp_to_ENSMUST00000161361_5end|description=CAGE_peak_3_at_Lypd1_5end|id=chr1:127809707..127809726,-|ontology_enrichment_celltype=CL:0000117!1.65e-19!23;CL:0000337!1.65e-19!23;CL:0000540!2.54e-12!33;CL:0000047!2.54e-12!33;CL:0000031!2.54e-12!33;CL:0000404!2.54e-12!33;CL:0000393!2.91e-09!39;CL:0000211!2.91e-09!39;CL:0000221!2.60e-08!44;CL:0000133!2.60e-08!44;CL:0002319!9.74e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,5.27e-28,23;CL:0000337,5.27e-28,23;CL:0000540,3.36e-18,33;CL:0000047,3.36e-18,33;CL:0000031,3.36e-18,33;CL:0000404,3.36e-18,33;CL:0000393,9.68e-15,39;CL:0000211,9.68e-15,39;CL:0000221,4.11e-14,44;CL:0000133,4.11e-14,44;CL:0002319,5.64e-13,43;CL:0002612,7.75e-08,3;CL:0002610,2.44e-07,3;CL:0002613,2.70e-07,3;CL:0002321,2.89e-07,70;CL:0000120,4.24e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!2.19e-27!34;UBERON:0001049!1.09e-26!52;UBERON:0005068!1.09e-26!52;UBERON:0006241!1.09e-26!52;UBERON:0007135!1.09e-26!52;UBERON:0000033!5.12e-25!63;UBERON:0002616!1.24e-23!49;UBERON:0001017!1.34e-23!73;UBERON:0005743!1.34e-23!73;UBERON:0002346!2.10e-23!71;UBERON:0003075!2.10e-23!71;UBERON:0007284!2.10e-23!71;UBERON:0003056!4.82e-23!49;UBERON:0000955!6.93e-23!50;UBERON:0006238!6.93e-23!50;UBERON:0000073!1.61e-22!75;UBERON:0001016!1.61e-22!75;UBERON:0002791!6.37e-22!29;UBERON:0003528!6.37e-22!29;UBERON:0001893!6.37e-22!29;UBERON:0003080!2.68e-21!40;UBERON:0002780!1.60e-20!39;UBERON:0001890!1.60e-20!39;UBERON:0006240!1.60e-20!39;UBERON:0004121!2.55e-19!102;UBERON:0000924!2.55e-19!102;UBERON:0006601!2.55e-19!102;UBERON:0007811!1.15e-15!86;UBERON:0000956!1.18e-14!21;UBERON:0001869!1.18e-14!21;UBERON:0000203!1.18e-14!21;UBERON:0000153!9.55e-14!94;UBERON:0002021!4.96e-12!10;UBERON:0000411!4.96e-12!10;UBERON:0001950!4.96e-12!10;UBERON:0002619!7.83e-12!17;UBERON:0002420!1.62e-08!8;UBERON:0007245!1.62e-08!8;UBERON:0010009!1.62e-08!8;UBERON:0010011!1.62e-08!8;UBERON:0000454!1.62e-08!8;UBERON:0002240!2.61e-07!6;UBERON:0005174!2.61e-07!6;UBERON:0001137!2.61e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0002020,3.29e-39,34;UBERON:0000073,1.19e-33,54;UBERON:0003528,8.60e-29,29;UBERON:0002791,8.60e-29,29;UBERON:0001893,8.60e-29,29;UBERON:0001017,9.89e-29,73;UBERON:0001049,7.09e-28,52;UBERON:0005068,7.09e-28,52;UBERON:0006241,7.09e-28,52;UBERON:0007135,7.09e-28,52;UBERON:0001016,9.07e-28,75;UBERON:0002780,1.01e-24,39;UBERON:0001890,1.01e-24,39;UBERON:0006240,1.01e-24,39;UBERON:0003080,5.73e-24,40;UBERON:0002021,2.44e-23,10;UBERON:0000411,2.44e-23,10;UBERON:0001950,2.44e-23,10;UBERON:0004121,8.10e-22,95;UBERON:0000924,8.10e-22,95;UBERON:0006601,8.10e-22,95;UBERON:0002619,1.55e-21,17;UBERON:0002346,1.98e-21,64;UBERON:0003075,1.98e-21,64;UBERON:0007284,1.98e-21,64;UBERON:0002616,3.94e-20,46;UBERON:0000956,7.46e-20,21;UBERON:0001869,7.46e-20,21;UBERON:0000203,7.46e-20,21;UBERON:0000955,1.38e-19,47;UBERON:0006238,1.38e-19,47;UBERON:0010371,1.75e-19,73;UBERON:0003056,1.45e-18,49;UBERON:0010314,4.33e-14,92;UBERON:0001948,2.75e-12,5;UBERON:0002315,2.75e-12,5;UBERON:0002240,3.62e-10,6;UBERON:0005174,3.62e-10,6;UBERON:0001137,3.62e-10,6;UBERON:0002420,5.83e-10,8;UBERON:0007245,5.83e-10,8;UBERON:0010009,5.83e-10,8;UBERON:0010011,5.83e-10,8;UBERON:0000454,5.83e-10,8;UBERON:0000025,3.22e-09,114;UBERON:0004111,5.14e-09,122;UBERON:0002257,7.75e-08,3;UBERON:0000369,9.64e-08,5;UBERON:0002435,9.64e-08,5;UBERON:0000204,9.64e-08,5;UBERON:0010082,9.64e-08,5;UBERON:0004684,2.44e-07,3;UBERON:0002275,2.44e-07,3;UBERON:0011216,8.00e-07,194|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02316460859598,3.70293685490423,1.26766280701236,0,0,0,0,0,0,0,0.622137673850866,0.270011876663381,0.841299845405528,6.56997264128748,5.74258206474195,1.83736198822431,1.0543001812006,0,4.40463523997555,2.80912143787413,1.38245879930619,1.71452174049252,1.64677758484337,4.68822033501084,0.558365998002762,2.25105044012672,2.75036845998258,5.59794312399969,6.97621235915604,1.67759501242771,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,1.26759077799012,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.898743836428936,0.915001205637253,9.1727677042391,7.30062144807561,3.58001640262463,1.45451631191692,3.73154905055843,0,0,0,0,0.260240885925407,0.229902104433473,0.540186389416048,0,0.136072998302656,0.12811372028485,0.374806898238915,0.258703370739016,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.14985825118033,0.823236899034275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,0.820481806145422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.129358683782755,0,0,0,0.329098041204242,0,0,0,0,0,0,0,0,0,0,0.74170120804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| ||
|EntrezGene=72585 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=F6TKE8 | |||
|association_with_transcript=-29bp_to_ENSMUST00000161361_5end | |||
|description=CAGE_peak_3_at_Lypd1_5end | |||
|id=chr1:127809707..127809726,- | |||
|ontology_enrichment_celltype=CL:0000117!1.65e-19!23;CL:0000337!1.65e-19!23;CL:0000540!2.54e-12!33;CL:0000047!2.54e-12!33;CL:0000031!2.54e-12!33;CL:0000404!2.54e-12!33;CL:0000393!2.91e-09!39;CL:0000211!2.91e-09!39;CL:0000221!2.60e-08!44;CL:0000133!2.60e-08!44;CL:0002319!9.74e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.27e-28,23;CL:0000337,5.27e-28,23;CL:0000540,3.36e-18,33;CL:0000047,3.36e-18,33;CL:0000031,3.36e-18,33;CL:0000404,3.36e-18,33;CL:0000393,9.68e-15,39;CL:0000211,9.68e-15,39;CL:0000221,4.11e-14,44;CL:0000133,4.11e-14,44;CL:0002319,5.64e-13,43;CL:0002612,7.75e-08,3;CL:0002610,2.44e-07,3;CL:0002613,2.70e-07,3;CL:0002321,2.89e-07,70;CL:0000120,4.24e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.19e-27!34;UBERON:0001049!1.09e-26!52;UBERON:0005068!1.09e-26!52;UBERON:0006241!1.09e-26!52;UBERON:0007135!1.09e-26!52;UBERON:0000033!5.12e-25!63;UBERON:0002616!1.24e-23!49;UBERON:0001017!1.34e-23!73;UBERON:0005743!1.34e-23!73;UBERON:0002346!2.10e-23!71;UBERON:0003075!2.10e-23!71;UBERON:0007284!2.10e-23!71;UBERON:0003056!4.82e-23!49;UBERON:0000955!6.93e-23!50;UBERON:0006238!6.93e-23!50;UBERON:0000073!1.61e-22!75;UBERON:0001016!1.61e-22!75;UBERON:0002791!6.37e-22!29;UBERON:0003528!6.37e-22!29;UBERON:0001893!6.37e-22!29;UBERON:0003080!2.68e-21!40;UBERON:0002780!1.60e-20!39;UBERON:0001890!1.60e-20!39;UBERON:0006240!1.60e-20!39;UBERON:0004121!2.55e-19!102;UBERON:0000924!2.55e-19!102;UBERON:0006601!2.55e-19!102;UBERON:0007811!1.15e-15!86;UBERON:0000956!1.18e-14!21;UBERON:0001869!1.18e-14!21;UBERON:0000203!1.18e-14!21;UBERON:0000153!9.55e-14!94;UBERON:0002021!4.96e-12!10;UBERON:0000411!4.96e-12!10;UBERON:0001950!4.96e-12!10;UBERON:0002619!7.83e-12!17;UBERON:0002420!1.62e-08!8;UBERON:0007245!1.62e-08!8;UBERON:0010009!1.62e-08!8;UBERON:0010011!1.62e-08!8;UBERON:0000454!1.62e-08!8;UBERON:0002240!2.61e-07!6;UBERON:0005174!2.61e-07!6;UBERON:0001137!2.61e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,3.29e-39,34;UBERON:0000073,1.19e-33,54;UBERON:0003528,8.60e-29,29;UBERON:0002791,8.60e-29,29;UBERON:0001893,8.60e-29,29;UBERON:0001017,9.89e-29,73;UBERON:0001049,7.09e-28,52;UBERON:0005068,7.09e-28,52;UBERON:0006241,7.09e-28,52;UBERON:0007135,7.09e-28,52;UBERON:0001016,9.07e-28,75;UBERON:0002780,1.01e-24,39;UBERON:0001890,1.01e-24,39;UBERON:0006240,1.01e-24,39;UBERON:0003080,5.73e-24,40;UBERON:0002021,2.44e-23,10;UBERON:0000411,2.44e-23,10;UBERON:0001950,2.44e-23,10;UBERON:0004121,8.10e-22,95;UBERON:0000924,8.10e-22,95;UBERON:0006601,8.10e-22,95;UBERON:0002619,1.55e-21,17;UBERON:0002346,1.98e-21,64;UBERON:0003075,1.98e-21,64;UBERON:0007284,1.98e-21,64;UBERON:0002616,3.94e-20,46;UBERON:0000956,7.46e-20,21;UBERON:0001869,7.46e-20,21;UBERON:0000203,7.46e-20,21;UBERON:0000955,1.38e-19,47;UBERON:0006238,1.38e-19,47;UBERON:0010371,1.75e-19,73;UBERON:0003056,1.45e-18,49;UBERON:0010314,4.33e-14,92;UBERON:0001948,2.75e-12,5;UBERON:0002315,2.75e-12,5;UBERON:0002240,3.62e-10,6;UBERON:0005174,3.62e-10,6;UBERON:0001137,3.62e-10,6;UBERON:0002420,5.83e-10,8;UBERON:0007245,5.83e-10,8;UBERON:0010009,5.83e-10,8;UBERON:0010011,5.83e-10,8;UBERON:0000454,5.83e-10,8;UBERON:0000025,3.22e-09,114;UBERON:0004111,5.14e-09,122;UBERON:0002257,7.75e-08,3;UBERON:0000369,9.64e-08,5;UBERON:0002435,9.64e-08,5;UBERON:0000204,9.64e-08,5;UBERON:0010082,9.64e-08,5;UBERON:0004684,2.44e-07,3;UBERON:0002275,2.44e-07,3;UBERON:0011216,8.00e-07,194 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02316460859598,3.70293685490423,1.26766280701236,0,0,0,0,0,0,0,0.622137673850866,0.270011876663381,0.841299845405528,6.56997264128748,5.74258206474195,1.83736198822431,1.0543001812006,0,4.40463523997555,2.80912143787413,1.38245879930619,1.71452174049252,1.64677758484337,4.68822033501084,0.558365998002762,2.25105044012672,2.75036845998258,5.59794312399969,6.97621235915604,1.67759501242771,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,1.26759077799012,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.898743836428936,0.915001205637253,9.1727677042391,7.30062144807561,3.58001640262463,1.45451631191692,3.73154905055843,0,0,0,0,0.260240885925407,0.229902104433473,0.540186389416048,0,0.136072998302656,0.12811372028485,0.374806898238915,0.258703370739016,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.14985825118033,0.823236899034275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,0.820481806145422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.129358683782755,0,0,0,0.329098041204242,0,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,5.0827665835536,7.36520378411483,9.73922372846974,5.15559547031063,8.22099023724771,2.2661816921691,2.02506750069542,4.05289082901798,3.62513927187364,8.28416498802912,0.103787347584177,0.798049746802062,0.512200817262403,0,0.628839487883947,0.367687016900028,0.44449345560323,0.618105171716683,1.28367683836726,0.758091635291392,0.50695859978048,0.377252682772152,0.187283014939765,0.832326981263301,0.287177344778066,0,0.463537303779422,0.578727661391115,0,0.588795680537589,1.02860775715625,1.4198064492747,0.953744759789284,0.581385666529314,0.188218760830661,0.676916863133412,0.73171189149109,0.526139422875686,0.950628796921032,0,0.830445126869219,0.689531376628944,0,0.77468420592983,0.385813221962283,1.49886346762768,0.467863216890817,0.644613162144895,0.191288332068843,0,0 | |||
|short_description=p3@Lypd1 | |||
}} |
Revision as of 18:40, 13 September 2013
Short description: | p3@Lypd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lypd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -29bp_to_ENSMUST00000161361_5end |
EntrezGene: | Lypd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.27e-28 | 23 |
neuroblast (sensu Vertebrata) | 5.27e-28 | 23 |
neuron | 3.36e-18 | 33 |
neuronal stem cell | 3.36e-18 | 33 |
neuroblast | 3.36e-18 | 33 |
electrically signaling cell | 3.36e-18 | 33 |
electrically responsive cell | 9.68e-15 | 39 |
electrically active cell | 9.68e-15 | 39 |
ectodermal cell | 4.11e-14 | 44 |
neurectodermal cell | 4.11e-14 | 44 |
neural cell | 5.64e-13 | 43 |
neuron of the ventral spinal cord | 7.75e-08 | 3 |
raphe nuclei neuron | 2.44e-07 | 3 |
striatum neuron | 2.70e-07 | 3 |
embryonic cell | 2.89e-07 | 70 |
granule cell | 4.24e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.