FFCP PHASE1:Hg19::chrX:54522195..54522218,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2245|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3663|TSSclassifier=S|UniProt=P98174|association_with_transcript=380bp_to_ENST00000375135,NM_004463,uc004dtg.2_5end|coexpression_cluster_id=C88|description=CAGE_peak_5_at_FGD1_5end|id=chrX:54522195..54522218,-|ontology_enrichment_celltype=CL:0000066!2.47e-26!254;CL:0002321!2.66e-15!248;CL:0000220!9.78e-15!246;CL:0000221!3.37e-13!71;CL:0002077!1.07e-12!33;CL:0000133!2.83e-09!59;CL:0000710!1.60e-08!20;CL:0000055!2.06e-08!180;CL:0000075!6.33e-08!27;CL:0000148!5.35e-07!10;CL:0000541!5.35e-07!10|ontology_enrichment_celltype_v019=CL:0000148;1.15e-15;10!CL:0002077;3.02e-15;34!CL:0000039;1.38e-11;7!CL:0000586;1.38e-11;7!CL:0000147;1.07e-10;14!CL:0000710;1.35e-10;20!CL:0002567;5.57e-09;3!CL:0000075;6.24e-09;27!CL:0000346;9.10e-09;3!CL:1000428;9.10e-09;3!CL:0002159;1.22e-07;14!CL:0002621;4.09e-07;3|ontology_enrichment_celltype_v019_2=CL:0002077,5.62e-17,34;CL:0000148,7.07e-16,10;CL:0000541,7.07e-16,10;CL:0000066,2.10e-15,253;CL:0000221,8.45e-14,72;CL:0000039,9.78e-12,7;CL:0000586,9.78e-12,7;CL:0000147,7.64e-11,14;CL:0000710,1.40e-10,20;CL:0002567,5.73e-09,3;CL:0000075,6.44e-09,27;CL:0000346,9.95e-09,3;CL:1000428,9.95e-09,3;CL:0000333,3.85e-08,41;CL:0002159,7.36e-08,14;CL:0000133,2.90e-07,59;CL:0002621,8.66e-07,3|ontology_enrichment_development_v019=CL:0000221;1.70e-07;72|ontology_enrichment_disease=DOID:0050687!3.97e-07!143|ontology_enrichment_disease_v019=DOID:3095;4.37e-07;22!DOID:2994;4.37e-07;22|ontology_enrichment_disease_v019_2=DOID:3095,4.24e-07,22;DOID:2994,4.24e-07,22|ontology_enrichment_uberon=UBERON:0003102!2.26e-13!95;UBERON:0002097!1.66e-11!40;UBERON:0002199!8.24e-10!45;UBERON:0002416!8.24e-10!45;UBERON:0000064!1.51e-09!219;UBERON:0000475!3.32e-08!365;UBERON:0001737!3.84e-07!9;UBERON:0000468!6.47e-07!659|ontology_enrichment_uberon_v019=UBERON:0001737;3.18e-11;9!UBERON:0001557;3.18e-11;9!UBERON:0001003;1.17e-09;15!UBERON:0007376;1.17e-09;15!UBERON:0000412;9.10e-09;3!UBERON:0001992;9.10e-09;3!UBERON:0001949;4.09e-07;3!UBERON:0010371;4.46e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.78e-11,9;UBERON:0001003,8.70e-10,15;UBERON:0007376,8.70e-10,15;UBERON:0007383,8.70e-10,15;UBERON:0000412,9.95e-09,3;UBERON:0001992,9.95e-09,3;UBERON:0005085,1.43e-08,31;UBERON:0003102,4.51e-07,99;UBERON:0001949,8.66e-07,3|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,2.62129646556207,1.58260186937072,0,0,0,0.602694528023977,0,0.487932798790507,1.23121058076788,0.408001382488506,0,0.286235987131057,0.273748850145768,0.87879847716362,0,0,0,0,0,0,0.919421224478927,1.8072355126695,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0,0.144846518960824,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0.261958150995425,2.18577172975525,2.96627554227544,0,0,0,0,0,0,0,0,0.347140501607594,0,0.838998872419812,0.275118041940067,0.208994966536811,0.258416759169329,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0.367663080345869,0,0.267899184852239,0,0.225222960966644,0,0,0,0,0,0.872188104285069,0,0.25326102332916,0.132409180813219,0,0,0,1.06748995729705,0,0,0.134710672069688,0,0.454072282934794,0,2.10889288650417,0.312160076830321,0.570471821544449,0.298897361103602,0.117434498643765,0.485618833104395,0.280901613404497,0.816616685019573,0.368502951935304,0.619954687054593,1.18800285728205,1.23633464639278,0,0,0.841680569770331,1.12606667884768,1.10825646193673,0.438977620880838,0.30648779579902,0.150238058906597,0.113432183160021,0.179389635688862,0.427114777637135,0,1.20036438433761,0.206105058476878,0,0.558350568994769,0.675105328965065,0.487185025805993,0.504867548488229,0.460249493211497,1.45481451136931,0.355009592516614,0.302256294682921,0.508681776931463,1.15956511897978,1.09098448236334,1.14721838155602,0.487894824518382,0.662648841607426,0.69716365721711,1.55491582523056,0,0,3.12899064659632,4.5026865673502,5.52539685409922,0,0,1.41968160047813,1.34867752062481,0.964044119533928,1.21323370005633,2.17879444092406,0.949082476444386,1.8876383142423,1.17732879075208,1.53898862778556,0.738155454624648,1.40241773803446,0.4115740113314,0,0,0,0,0,0.245976877086227,0.343135620597051,2.41450627898976,4.49607013030478,0.904760751704678,1.29623823221941,1.95484983186195,0,0,0.115930404975077,0.117408694235822,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0.335964256397719,1.55952606966625,0.358234090811393,1.16253575405585,1.91691339582606,0,0,0,0,0.12624243342638,2.79390734885544,10.6956759156318,21.0991404978085,6.84289784090821,3.90744472272629,4.80548892550268,6.85983438313388,0.672786506072164,0.43596006883328,0.2933531432838,0,3.57656445851882,0,1.06375246633948,2.08014873822732,0.257207374262142,0,0,0.285955987316295,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.2396248554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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2245 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3663 | |||
|TSSclassifier=S | |||
|UniProt=P98174 | |||
|association_with_transcript=380bp_to_ENST00000375135,NM_004463,uc004dtg.2_5end | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_5_at_FGD1_5end | |||
|id=chrX:54522195..54522218,- | |||
|ontology_enrichment_celltype=CL:0000066!2.47e-26!254;CL:0002321!2.66e-15!248;CL:0000220!9.78e-15!246;CL:0000221!3.37e-13!71;CL:0002077!1.07e-12!33;CL:0000133!2.83e-09!59;CL:0000710!1.60e-08!20;CL:0000055!2.06e-08!180;CL:0000075!6.33e-08!27;CL:0000148!5.35e-07!10;CL:0000541!5.35e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.15e-15;10!CL:0002077;3.02e-15;34!CL:0000039;1.38e-11;7!CL:0000586;1.38e-11;7!CL:0000147;1.07e-10;14!CL:0000710;1.35e-10;20!CL:0002567;5.57e-09;3!CL:0000075;6.24e-09;27!CL:0000346;9.10e-09;3!CL:1000428;9.10e-09;3!CL:0002159;1.22e-07;14!CL:0002621;4.09e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002077,5.62e-17,34;CL:0000148,7.07e-16,10;CL:0000541,7.07e-16,10;CL:0000066,2.10e-15,253;CL:0000221,8.45e-14,72;CL:0000039,9.78e-12,7;CL:0000586,9.78e-12,7;CL:0000147,7.64e-11,14;CL:0000710,1.40e-10,20;CL:0002567,5.73e-09,3;CL:0000075,6.44e-09,27;CL:0000346,9.95e-09,3;CL:1000428,9.95e-09,3;CL:0000333,3.85e-08,41;CL:0002159,7.36e-08,14;CL:0000133,2.90e-07,59;CL:0002621,8.66e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000221;1.70e-07;72 | |||
|ontology_enrichment_disease=DOID:0050687!3.97e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.37e-07;22!DOID:2994;4.37e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.24e-07,22;DOID:2994,4.24e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0003102!2.26e-13!95;UBERON:0002097!1.66e-11!40;UBERON:0002199!8.24e-10!45;UBERON:0002416!8.24e-10!45;UBERON:0000064!1.51e-09!219;UBERON:0000475!3.32e-08!365;UBERON:0001737!3.84e-07!9;UBERON:0000468!6.47e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.18e-11;9!UBERON:0001557;3.18e-11;9!UBERON:0001003;1.17e-09;15!UBERON:0007376;1.17e-09;15!UBERON:0000412;9.10e-09;3!UBERON:0001992;9.10e-09;3!UBERON:0001949;4.09e-07;3!UBERON:0010371;4.46e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.78e-11,9;UBERON:0001003,8.70e-10,15;UBERON:0007376,8.70e-10,15;UBERON:0007383,8.70e-10,15;UBERON:0000412,9.95e-09,3;UBERON:0001992,9.95e-09,3;UBERON:0005085,1.43e-08,31;UBERON:0003102,4.51e-07,99;UBERON:0001949,8.66e-07,3 | |||
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| |||
|short_description=p5@FGD1 | |||
}} |
Revision as of 12:15, 14 September 2013
Short description: | p5@FGD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_FGD1_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 380bp_to_ENST00000375135, NM_004463, uc004dtg.2_5end |
EntrezGene: | FGD1 |
HGNC: | 3663 |
UniProt: | P98174 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelial cell | 5.62e-17 | 34 |
melanocyte | 7.07e-16 | 10 |
melanoblast | 7.07e-16 | 10 |
epithelial cell | 2.10e-15 | 253 |
ectodermal cell | 8.45e-14 | 72 |
germ line cell | 9.78e-12 | 7 |
germ cell | 9.78e-12 | 7 |
pigment cell | 7.64e-11 | 14 |
neurecto-epithelial cell | 1.40e-10 | 20 |
light melanocyte | 5.73e-09 | 3 |
columnar/cuboidal epithelial cell | 6.44e-09 | 27 |
hair follicle dermal papilla cell | 9.95e-09 | 3 |
stem cell of epidermis | 9.95e-09 | 3 |
migratory neural crest cell | 3.85e-08 | 41 |
general ecto-epithelial cell | 7.36e-08 | 14 |
neurectodermal cell | 2.90e-07 | 59 |
gingival epithelial cell | 8.66e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.78e-11 | 9 |
skin epidermis | 8.70e-10 | 15 |
outer epithelium | 8.70e-10 | 15 |
enveloping layer of ectoderm | 8.70e-10 | 15 |
dermal papilla | 9.95e-09 | 3 |
papillary layer of dermis | 9.95e-09 | 3 |
ectodermal placode | 1.43e-08 | 31 |
surface structure | 4.51e-07 | 99 |
gingival epithelium | 8.66e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.24e-07 | 22 |
germ cell cancer | 4.24e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.