FFCP PHASE1:Mm9::chr8:129468876..129468878,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=241|UniProt=|association_with_transcript=1bp_to_ENSMUST00000083703_5end|description=CAGE_peak_1_at_ENSMUST00000083703_5end|id=chr8:129468876..129468878,-|ontology_enrichment_celltype=CL:0000055!1.43e-10!50;CL:0000393!4.64e-10!39;CL:0000211!4.64e-10!39;CL:0002319!7.56e-10!43;CL:0000221!2.26e-09!44;CL:0000133!2.26e-09!44;CL:0002321!5.39e-09!70;CL:0000220!5.39e-09!70;CL:0000540!6.38e-09!33;CL:0000047!6.38e-09!33;CL:0000031!6.38e-09!33;CL:0000404!6.38e-09!33;CL:0000117!7.27e-08!23;CL:0000337!7.27e-08!23;CL:0000723!2.80e-07!91;CL:0000048!2.80e-07!91;CL:0000034!3.53e-07!97|ontology_enrichment_celltype_v019_2=CL:0000117,3.14e-10,23;CL:0000337,3.14e-10,23;CL:0002614,3.67e-10,3;CL:0000540,4.88e-07,33;CL:0000047,4.88e-07,33;CL:0000031,4.88e-07,33;CL:0000404,4.88e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!2.22e-08!34;UBERON:0002791!3.54e-08!29;UBERON:0003528!3.54e-08!29;UBERON:0001893!3.54e-08!29;UBERON:0001017!1.13e-07!73;UBERON:0005743!1.13e-07!73;UBERON:0000073!1.43e-07!75;UBERON:0001016!1.43e-07!75|ontology_enrichment_uberon_v019_2=UBERON:0002038,3.67e-10,3;UBERON:0009663,3.67e-10,3;UBERON:0009661,3.67e-10,3;UBERON:0000125,3.67e-10,3;UBERON:0002308,3.67e-10,3;UBERON:0002420,3.37e-08,8;UBERON:0007245,3.37e-08,8;UBERON:0010009,3.37e-08,8;UBERON:0010011,3.37e-08,8;UBERON:0000454,3.37e-08,8;UBERON:0003528,3.70e-08,29;UBERON:0002791,3.70e-08,29;UBERON:0001893,3.70e-08,29;UBERON:0002950,7.72e-08,4;UBERON:0001891,7.72e-08,4;UBERON:0009616,7.72e-08,4;UBERON:0010286,7.72e-08,4;UBERON:0002020,6.55e-07,34|phase1_expression=0,0,0,0,0,0,0,0,0.140788722151667,0.234064526321993,0.34243593645101,0.398860794976682,0,0,0,0.202475267389826,0,0,0.137114433605739,0,0.0850432901510698,0,0,0.159992422793407,0,0,0,0,0,0.252030129759931,0,10.1604907753541,0.61506478758457,0,0.577703239502549,0,0,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0.183546752161682,0,0.436050312760893,0.439372365468944,0.388859798148567,0.699932108126813,0,0,0,0.336093799142464,0.257259436035947,0,0.515672092277442,0.404632921719196,1.05798195854407,0,0,0,0,1.97773272513395,0,0.898800331555214,0,0.103689612308478,0.405017814995072,0.841299845405528,0,0,0.244981598429908,0.191690942036473,1.83843757322004,0,1.0214987046815,0.768032666281217,1.05509030184155,0.365950574409639,0,1.3959149950069,0.56276261003168,1.98637722109853,0.294628585473668,0.569486723196412,0.186399445825301,0,0.151143120213571,0.289864488701678,0,0,0.539703191637817,2.59910566979068,1.34408066129201,0,0.170430322578058,0.519572009205738,0,0,0,0,0,0.216491041011214,0,0.505524445014783,0.34255163915718,0,0.148442139064825,0,0,0,0.150722640552623,0,0.125666591329675,0,0.144599356919912,0,0.161766849947409,0,0.484875253135222,0,0,0.209446706813455,0,0.239630249011841,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0.210441855886474,0,0,0.180062129805349,0,0.136072998302656,0,0,0.258703370739016,0,0,0,0,0.556094498451196,0,0,0,0,0,0.284163499395593,0,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0.232533944750408,0,0.116765342367169,0,0,0.0810688095458557,0.292399974850665,0,0,0,0,0,0,0,0,0.128867461322093,0,0.22237804384487,0,0.474529061544512,0,0.251335208800269,0,0.19496408711912,0.898819408654221,0,0,0,0,0,0.203651327845314,0,0.140271639780637,0.0632365371242573,0,0,0.123397163921801,0,0,0,0.224862112384854,0,0.241177159752417,0,0,0,0.274561413188081,1.43768206527355,0.372140947668503,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0.221464689648775,0,0,0,0,0,0,0,0,0,0,0,0,0.631016438832513,0,0.646270193198397,0.477937595905104,0.668396022247182,0,0.404810701674894,0.292255857911312,0,0,0,0,0,0,0,0.485561272309963,0,0,0,0,0,0.363533729477506,0,0.316036757935816,0,0,0,0,0.129358683782755,0.214337035031592,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0.228778173206523,0,0,0.138199973804424,0,0.158167996790568,0.203319467126849,0.216010681643603,0,0.218362563746178,0,0.0826534557253359,0,0.129614973291793,0,0,0,0.165458490457098,0,0,0,0,0,0.104859344425711,0,0.288030006257865,0,0,0.102710957164827,0.129920822977795,0.179026695667481,0,0.240390899039938,0.147689527174577,0,0,0.302478555410522,0,0.0962118416403295,0.116876902181569,0,0.221985953374065,0.179427713218951,0,0,0,0.183151624267265,0.428736758158132,0,1.6942555278512,0,1.14579102687879,0.515559547031063,0.685082519770642,0.755393897389701,0.675022500231806,0,0,0.51776031175182,0.103787347584177,0.399024873401031,0,0,0.209613162627982,0,0,0.206035057238894,0.320919209591815,0,0.25347929989024,0,0,0.0640251524048693,0,0,0.231768651889711,0,0,0,0,0,0.476872379894642,0,0,0,0,0,0.135804113845862,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0|short_description=p1@ENSMUST00000083703}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=241 | |||
|UniProt= | |||
|association_with_transcript=1bp_to_ENSMUST00000083703_5end | |||
|description=CAGE_peak_1_at_ENSMUST00000083703_5end | |||
|id=chr8:129468876..129468878,- | |||
|ontology_enrichment_celltype=CL:0000055!1.43e-10!50;CL:0000393!4.64e-10!39;CL:0000211!4.64e-10!39;CL:0002319!7.56e-10!43;CL:0000221!2.26e-09!44;CL:0000133!2.26e-09!44;CL:0002321!5.39e-09!70;CL:0000220!5.39e-09!70;CL:0000540!6.38e-09!33;CL:0000047!6.38e-09!33;CL:0000031!6.38e-09!33;CL:0000404!6.38e-09!33;CL:0000117!7.27e-08!23;CL:0000337!7.27e-08!23;CL:0000723!2.80e-07!91;CL:0000048!2.80e-07!91;CL:0000034!3.53e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.14e-10,23;CL:0000337,3.14e-10,23;CL:0002614,3.67e-10,3;CL:0000540,4.88e-07,33;CL:0000047,4.88e-07,33;CL:0000031,4.88e-07,33;CL:0000404,4.88e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.22e-08!34;UBERON:0002791!3.54e-08!29;UBERON:0003528!3.54e-08!29;UBERON:0001893!3.54e-08!29;UBERON:0001017!1.13e-07!73;UBERON:0005743!1.13e-07!73;UBERON:0000073!1.43e-07!75;UBERON:0001016!1.43e-07!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,3.67e-10,3;UBERON:0009663,3.67e-10,3;UBERON:0009661,3.67e-10,3;UBERON:0000125,3.67e-10,3;UBERON:0002308,3.67e-10,3;UBERON:0002420,3.37e-08,8;UBERON:0007245,3.37e-08,8;UBERON:0010009,3.37e-08,8;UBERON:0010011,3.37e-08,8;UBERON:0000454,3.37e-08,8;UBERON:0003528,3.70e-08,29;UBERON:0002791,3.70e-08,29;UBERON:0001893,3.70e-08,29;UBERON:0002950,7.72e-08,4;UBERON:0001891,7.72e-08,4;UBERON:0009616,7.72e-08,4;UBERON:0010286,7.72e-08,4;UBERON:0002020,6.55e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.140788722151667,0.234064526321993,0.34243593645101,0.398860794976682,0,0,0,0.202475267389826,0,0,0.137114433605739,0,0.0850432901510698,0,0,0.159992422793407,0,0,0,0,0,0.252030129759931,0,10.1604907753541,0.61506478758457,0,0.577703239502549,0,0,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0.183546752161682,0,0.436050312760893,0.439372365468944,0.388859798148567,0.699932108126813,0,0,0,0.336093799142464,0.257259436035947,0,0.515672092277442,0.404632921719196,1.05798195854407,0,0,0,0,1.97773272513395,0,0.898800331555214,0,0.103689612308478,0.405017814995072,0.841299845405528,0,0,0.244981598429908,0.191690942036473,1.83843757322004,0,1.0214987046815,0.768032666281217,1.05509030184155,0.365950574409639,0,1.3959149950069,0.56276261003168,1.98637722109853,0.294628585473668,0.569486723196412,0.186399445825301,0,0.151143120213571,0.289864488701678,0,0,0.539703191637817,2.59910566979068,1.34408066129201,0,0.170430322578058,0.519572009205738,0,0,0,0,0,0.216491041011214,0,0.505524445014783,0.34255163915718,0,0.148442139064825,0,0,0,0.150722640552623,0,0.125666591329675,0,0.144599356919912,0,0.161766849947409,0,0.484875253135222,0,0,0.209446706813455,0,0.239630249011841,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0.210441855886474,0,0,0.180062129805349,0,0.136072998302656,0,0,0.258703370739016,0,0,0,0,0.556094498451196,0,0,0,0,0,0.284163499395593,0,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0.232533944750408,0,0.116765342367169,0,0,0.0810688095458557,0.292399974850665,0,0,0,0,0,0,0,0,0.128867461322093,0,0.22237804384487,0,0.474529061544512,0,0.251335208800269,0,0.19496408711912,0.898819408654221,0,0,0,0,0,0.203651327845314,0,0.140271639780637,0.0632365371242573,0,0,0.123397163921801,0,0,0,0.224862112384854,0,0.241177159752417,0,0,0,0.274561413188081,1.43768206527355,0.372140947668503,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0.221464689648775,0,0,0,0,0,0,0,0,0,0,0,0,0.631016438832513,0,0.646270193198397,0.477937595905104,0.668396022247182,0,0.404810701674894,0.292255857911312,0,0,0,0,0,0,0,0.485561272309963,0,0,0,0,0,0.363533729477506,0,0.316036757935816,0,0,0,0,0.129358683782755,0.214337035031592,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0.228778173206523,0,0,0.138199973804424,0,0.158167996790568,0.203319467126849,0.216010681643603,0,0.218362563746178,0,0.0826534557253359,0,0.129614973291793,0,0,0,0.165458490457098,0,0,0,0,0,0.104859344425711,0,0.288030006257865,0,0,0.102710957164827,0.129920822977795,0.179026695667481,0,0.240390899039938,0.147689527174577,0,0,0.302478555410522,0,0.0962118416403295,0.116876902181569,0,0.221985953374065,0.179427713218951,0,0,0,0.183151624267265,0.428736758158132,0,1.6942555278512,0,1.14579102687879,0.515559547031063,0.685082519770642,0.755393897389701,0.675022500231806,0,0,0.51776031175182,0.103787347584177,0.399024873401031,0,0,0.209613162627982,0,0,0.206035057238894,0.320919209591815,0,0.25347929989024,0,0,0.0640251524048693,0,0,0.231768651889711,0,0,0,0,0,0.476872379894642,0,0,0,0,0,0.135804113845862,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@ENSMUST00000083703 | |||
}} |
Revision as of 15:11, 14 September 2013
Short description: | p1@ENSMUST00000083703 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000083703_5end |
Coexpression cluster: | MCL_coexpression_mm9:241 |
Association with transcript: | 1bp_to_ENSMUST00000083703_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.14e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.14e-10 | 23 |
neuron of the substantia nigra | 3.67e-10 | 3 |
neuron | 4.88e-07 | 33 |
neuronal stem cell | 4.88e-07 | 33 |
neuroblast | 4.88e-07 | 33 |
electrically signaling cell | 4.88e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 3.67e-10 | 3 |
telencephalic nucleus | 3.67e-10 | 3 |
midbrain nucleus | 3.67e-10 | 3 |
neural nucleus | 3.67e-10 | 3 |
nucleus of brain | 3.67e-10 | 3 |
basal ganglion | 3.37e-08 | 8 |
nuclear complex of neuraxis | 3.37e-08 | 8 |
aggregate regional part of brain | 3.37e-08 | 8 |
collection of basal ganglia | 3.37e-08 | 8 |
cerebral subcortex | 3.37e-08 | 8 |
brain grey matter | 3.70e-08 | 29 |
regional part of telencephalon | 3.70e-08 | 29 |
telencephalon | 3.70e-08 | 29 |
regional part of midbrain | 7.72e-08 | 4 |
midbrain | 7.72e-08 | 4 |
presumptive midbrain | 7.72e-08 | 4 |
midbrain neural tube | 7.72e-08 | 4 |
gray matter | 6.55e-07 | 34 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.