FFCP PHASE1:Hg19::chr1:116072140..116072172,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1601 | |||
|description=CAGE_peak_at_chr1:116072140..116072172,+ | |||
|id=chr1:116072140..116072172,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.86e-13!43;CL:0002166!1.48e-12!3;CL:0002621!2.32e-12!3;CL:0002149!6.00e-10!6;CL:0002255!6.00e-10!6;CL:0002159!6.75e-10!13;CL:0000223!8.35e-09!59;CL:0000317!1.15e-08!2;CL:1000448!1.15e-08!2;CL:0002308!1.15e-08!2;CL:0002140!1.15e-08!2;CL:0000066!5.00e-08!254;CL:0000220!9.73e-08!246;CL:0002583!1.14e-07!2;CL:0002321!1.29e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002166;1.23e-66;3!CL:0002621;1.98e-30;3!CL:0002159;1.35e-25;14!CL:0000317;2.90e-12;2!CL:1000448;2.90e-12;2!CL:0002308;2.90e-12;2!CL:0002140;2.90e-12;2!CL:0002077;2.12e-09;34!CL:0000135;1.30e-08;3!CL:0000388;1.30e-08;3!CL:0000244;9.10e-07;4!CL:0000731;9.10e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,7.85e-67,3;CL:0002621,1.98e-30,3;CL:0002159,1.12e-25,14;CL:0000317,2.59e-12,2;CL:1000448,2.59e-12,2;CL:0002308,2.59e-12,2;CL:0002140,2.59e-12,2;CL:0002077,7.56e-11,34;CL:0000135,1.30e-08,3;CL:0000388,1.30e-08,3;CL:0000244,9.63e-07,4;CL:0000731,9.63e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3001!6.00e-10!6 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!2.32e-12!3;UBERON:0001708!1.65e-09!4;UBERON:0001704!1.65e-09!4;UBERON:0002419!1.15e-08!2;UBERON:0007771!1.15e-08!2;UBERON:0003297!1.15e-08!2;UBERON:0001821!1.15e-08!2;UBERON:0003487!1.15e-08!2;UBERON:0001820!1.15e-08!2;UBERON:0005089!1.15e-08!2;UBERON:0005088!1.15e-08!2;UBERON:0004807!7.14e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0001708;3.12e-50;4!UBERON:0008895;3.12e-50;4!UBERON:0011159;2.23e-40;5!UBERON:0001949;1.98e-30;3!UBERON:0011137;8.15e-19;11!UBERON:0010323;8.15e-19;11!UBERON:0000486;3.25e-17;12!UBERON:0003929;1.15e-13;7!UBERON:0000075;3.65e-13;16!UBERON:0002419;2.90e-12;2!UBERON:0007771;2.90e-12;2!UBERON:0003297;2.90e-12;2!UBERON:0001821;2.90e-12;2!UBERON:0003487;2.90e-12;2!UBERON:0001820;2.90e-12;2!UBERON:0003350;4.42e-12;8!UBERON:0001828;4.42e-12;8!UBERON:0007846;1.30e-08;3!UBERON:0000043;1.30e-08;3!UBERON:0007845;1.30e-08;3!UBERON:0004765;2.40e-08;26!UBERON:0003729;8.59e-08;13!UBERON:0010371;2.84e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001708,2.23e-50,4;UBERON:0008895,2.23e-50,4;UBERON:0011159,1.70e-40,5;UBERON:0010188,6.72e-34,6;UBERON:0002539,6.72e-34,6;UBERON:0008816,6.72e-34,6;UBERON:0001949,1.98e-30,3;UBERON:0010323,7.22e-19,11;UBERON:0011137,5.52e-15,14;UBERON:0000075,3.36e-13,16;UBERON:0002419,2.59e-12,2;UBERON:0007771,2.59e-12,2;UBERON:0003297,2.59e-12,2;UBERON:0001821,2.59e-12,2;UBERON:0003487,2.59e-12,2;UBERON:0001820,2.59e-12,2;UBERON:0005089,2.59e-12,2;UBERON:0005088,2.59e-12,2;UBERON:0003350,4.42e-12,8;UBERON:0001828,4.42e-12,8;UBERON:0008814,8.28e-12,18;UBERON:0000033,4.15e-10,56;UBERON:0000153,3.83e-09,62;UBERON:0007811,3.83e-09,62;UBERON:0007846,1.30e-08,3;UBERON:0000043,1.30e-08,3;UBERON:0007845,1.30e-08,3;UBERON:0003102,4.65e-08,99;UBERON:0003729,8.59e-08,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.805658634218294,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508681776931463,3.67195621010264,3.27295344709002,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0.463721619900307,0,0,0,0.190254152234598,0,0,0,0,0,21.5587818169587,1.84780341018745,4.11147782002921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0.739144404124282,0,0.348631135379878,0,0.601519410909855,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,0.650060246036521,0,0.096670718292122,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0.638063562472921,0,0,0,0,0.616067160352178,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.987884678879706,0,0,0,0,0,0,1.29151611801369,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0.520679215005393,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0.554805861502613,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0.354996002191696,0.340853619036631,0,1.14553434272025,0,0.955538938977433,0,0,0,0,0,0,0,0.467878926924211,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:116072140..116072172,+ | |||
}} |
Revision as of 20:19, 10 January 2014
Short description: | p@chr1:116072140..116072172, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:116072140..116072172, + |
Coexpression cluster: | C1601_Mallassezderived_Gingival_Keratinocyte_Prostate_Sebocyte_salivary_cervical |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 7.85e-67 | 3 |
gingival epithelial cell | 1.98e-30 | 3 |
general ecto-epithelial cell | 1.12e-25 | 14 |
sebum secreting cell | 2.59e-12 | 2 |
epithelial cell of sweat gland | 2.59e-12 | 2 |
epithelial cell of skin gland | 2.59e-12 | 2 |
acinar cell of sebaceous gland | 2.59e-12 | 2 |
ecto-epithelial cell | 7.56e-11 | 34 |
fibrocyte | 1.30e-08 | 3 |
tendon cell | 1.30e-08 | 3 |
transitional epithelial cell | 9.63e-07 | 4 |
urothelial cell | 9.63e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
jaw skeleton | 2.23e-50 | 4 |
splanchnocranium | 2.23e-50 | 4 |
primary subdivision of cranial skeletal system | 1.70e-40 | 5 |
protuberance | 6.72e-34 | 6 |
pharyngeal arch | 6.72e-34 | 6 |
embryonic head | 6.72e-34 | 6 |
gingival epithelium | 1.98e-30 | 3 |
cranial skeletal system | 7.22e-19 | 11 |
axial skeletal system | 5.52e-15 | 14 |
subdivision of skeletal system | 3.36e-13 | 16 |
skin gland | 2.59e-12 | 2 |
epidermis gland | 2.59e-12 | 2 |
gland of integumental system | 2.59e-12 | 2 |
sebaceous gland | 2.59e-12 | 2 |
skin sebaceous gland | 2.59e-12 | 2 |
sweat gland | 2.59e-12 | 2 |
sweat gland placode | 2.59e-12 | 2 |
sebaceous gland placode | 2.59e-12 | 2 |
epithelium of mucosa | 4.42e-12 | 8 |
gingiva | 4.42e-12 | 8 |
pharyngeal arch system | 8.28e-12 | 18 |
head | 4.15e-10 | 56 |
anterior region of body | 3.83e-09 | 62 |
craniocervical region | 3.83e-09 | 62 |
dense regular connective tissue | 1.30e-08 | 3 |
tendon | 1.30e-08 | 3 |
regular connective tissue | 1.30e-08 | 3 |
surface structure | 4.65e-08 | 99 |
mouth mucosa | 8.59e-08 | 13 |