FFCP PHASE1:Hg19::chr10:68685786..68685801,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=347731 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19410 | |||
|TSSclassifier=strong | |||
|UniProt=Q86VH5 | |||
|association_with_transcript=0bp_to_ENST00000373722,NM_178011,uc001jmy.2,uc001jmz.1_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_LRRTM3_5end | |||
|id=chr10:68685786..68685801,+ | |||
|ontology_enrichment_celltype=CL:0000047!8.65e-09!8;CL:0000540!8.78e-07!6;CL:0000031!8.78e-07!6;CL:0000404!8.78e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;2.55e-07;6!CL:0000404;2.55e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.74e-10,8;CL:0000540,2.50e-07,6;CL:0000031,2.50e-07,6;CL:0000404,2.50e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.46e-17;82!UBERON:0006215;1.32e-07;3!CL:0000031;2.55e-07;6!UBERON:0006241;9.77e-07;3!UBERON:0003057;9.77e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.23e-64!82;UBERON:0005743!4.41e-62!86;UBERON:0001049!1.01e-58!57;UBERON:0005068!1.01e-58!57;UBERON:0006241!1.01e-58!57;UBERON:0007135!1.01e-58!57;UBERON:0000073!1.34e-58!94;UBERON:0001016!1.34e-58!94;UBERON:0002616!9.59e-53!59;UBERON:0000955!5.27e-51!69;UBERON:0006238!5.27e-51!69;UBERON:0002780!6.67e-49!41;UBERON:0001890!6.67e-49!41;UBERON:0006240!6.67e-49!41;UBERON:0003080!2.35e-47!42;UBERON:0003075!4.87e-45!86;UBERON:0007284!4.87e-45!86;UBERON:0002346!1.74e-43!90;UBERON:0001893!5.37e-41!34;UBERON:0002020!5.72e-41!34;UBERON:0003528!5.72e-41!34;UBERON:0002791!7.81e-40!33;UBERON:0001869!7.29e-39!32;UBERON:0004121!1.24e-36!169;UBERON:0000924!4.00e-36!173;UBERON:0006601!4.00e-36!173;UBERON:0007023!1.14e-35!115;UBERON:0003056!1.44e-33!61;UBERON:0000956!2.21e-30!25;UBERON:0000203!2.21e-30!25;UBERON:0002619!9.32e-29!22;UBERON:0001950!1.48e-26!20;UBERON:0000033!2.79e-26!123;UBERON:0000153!4.85e-25!129;UBERON:0007811!4.85e-25!129;UBERON:0003076!2.62e-12!15;UBERON:0003057!2.62e-12!15;UBERON:0002420!3.10e-12!9;UBERON:0007245!3.10e-12!9;UBERON:0010009!3.10e-12!9;UBERON:0010011!3.10e-12!9;UBERON:0000454!3.10e-12!9;UBERON:0002308!6.95e-12!9;UBERON:0000125!6.95e-12!9;UBERON:0000025!2.89e-11!194;UBERON:0001871!5.96e-11!7;UBERON:0004732!2.98e-10!13;UBERON:0009663!8.67e-10!7;UBERON:0000064!1.26e-09!219;UBERON:0004733!2.66e-09!12;UBERON:0002028!2.66e-09!12;UBERON:0007277!2.66e-09!12;UBERON:0001894!3.81e-09!7;UBERON:0006222!3.81e-09!7;UBERON:0000200!7.20e-09!6;UBERON:0001872!1.33e-07!5;UBERON:0002021!1.50e-07!5;UBERON:0002298!1.66e-07!8;UBERON:0000349!1.82e-07!5;UBERON:0000119!1.84e-07!312;UBERON:0000483!2.00e-07!309;UBERON:0004111!2.18e-07!241;UBERON:0000475!2.72e-07!365;UBERON:0000922!4.02e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.59e-52;41!UBERON:0001890;4.59e-52;41!UBERON:0001893;2.48e-51;34!UBERON:0003528;2.61e-51;34!UBERON:0002020;2.61e-51;34!UBERON:0001869;4.17e-51;32!UBERON:0002791;5.24e-51;32!UBERON:0000073;3.39e-48;53!UBERON:0002616;3.39e-48;53!UBERON:0002619;3.82e-46;22!UBERON:0000956;3.27e-43;25!UBERON:0000203;3.27e-43;25!UBERON:0001950;1.53e-42;20!UBERON:0001017;3.91e-33;75!UBERON:0000955;1.04e-32;68!UBERON:0001016;2.08e-27;83!UBERON:0002420;5.44e-19;9!UBERON:0007245;5.44e-19;9!UBERON:0010009;5.44e-19;9!UBERON:0010011;5.44e-19;9!UBERON:0000454;5.44e-19;9!UBERON:0000125;1.93e-18;9!UBERON:0002308;1.93e-18;9!UBERON:0009663;5.44e-15;7!UBERON:0001871;5.73e-15;6!UBERON:0004732;2.88e-14;13!UBERON:0001894;6.34e-14;7!UBERON:0000200;1.64e-13;6!UBERON:0007023;3.61e-13;114!UBERON:0004733;9.65e-13;12!UBERON:0002028;9.65e-13;12!UBERON:0002298;8.97e-12;6!UBERON:0001872;1.86e-11;5!UBERON:0002021;2.48e-11;5!UBERON:0000349;3.35e-11;5!UBERON:0011216;1.72e-10;132!UBERON:0000369;8.14e-10;4!UBERON:0002435;8.14e-10;4!UBERON:0000204;8.14e-10;4!UBERON:0003296;1.62e-08;4!UBERON:0010133;1.62e-08;4!UBERON:0002680;3.58e-08;9!UBERON:0001895;3.58e-08;9!UBERON:0002784;7.34e-08;4!UBERON:0005383;8.10e-08;3!UBERON:0005382;8.10e-08;3!UBERON:0001870;9.96e-08;3!UBERON:0010314;4.74e-07;132!UBERON:0000988;8.67e-07;3!UBERON:0002240;9.77e-07;3!UBERON:0005174;9.77e-07;3!UBERON:0001137;9.77e-07;3 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,2.18441372130172,1.58260186937072,0,0,0,0,0,0,0.123121058076788,0,0,1.14494394852423,0.136874425072884,0.251085279189606,0,0.0821005894499457,0,0,0,0.464448369948228,0,0,0,3.17615522379237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.17367348215965,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0.355009592516614,0,0,0,0,0,0.609868530647977,0.927708378250397,1.74290914304278,0.518305275076852,2.27088765788066,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0.179060963239896,0,0,0,0,22.1062323073543,2.60279707715243,1.54657762555539,2.84777651068393,2.55175500661265,0,0,0,0.36807447515742,0,0,0.207970861530807,3.03329280955175,2.68094105557689,0.35142424497814,0.601892199455438,0,1.03473071292505,0,0,0,0.195801157462741,0,0,0,0,0,0,2.41912234663744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.949138274156178,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982490410131212,0,0,0,0,0,1.74967360122491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.27673408723686,0.111443384277478,0,2.86493381685228,3.56357616999166,2.76444631889309,46.724939445016,34.3233376041651,0,0,0.422250816255987,0.398495976502139,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0.197286811273867,0,0,29.0799823828566,34.8808049088561,9.98068990005971,0,0,0,0,0,1.89110145414349,0.344743373241465,0,0.694499979733169,40.7441037474366,46.0678395549058,38.1454340792708,58.9387455433427,26.0081904679122,32.249653381634,0,0.139423744278603,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,9.70576314921749,0,29.7515846071181,0,0,0,0,2.41981432097328,29.3829851165271,0.821425535170343,0.150323419414493,0,0,0,0.313932918407225,0,0,1.94144542218394,0,0,0,0,0,0,0,0,0,49.8647115806976,1.80784592624426,0,0,41.1520173713212,0,0.160317640503067,0,0,0,0,0,0,0.124252535565433,0,0.271808412147228,0,0,1.73370353940911,23.4163912596818,12.5952948580634,0,0.859530882839914,0,0,0,0,0,0,0,0.671834724867263,0,0,0,0,0,0,0,13.5189047267582,22.3373586022984,0.964518890790115,2.47570985875021,1.66176135211674,0,0,32.6225119253592,0,0,1.73100140845494,0.105600336519406,0,0.575745591958336,0,0,0,0,0,0,0,0,0.511164065356265,0,0,0,12.0233149416242,13.223260174269,0,0,0.213574825135389,0.943225830597996,0,0,0,0,0,0.544017803369474,0,0,0,0,43.4173408183823,49.1765847554911,37.1817064198305,7.45431954397093,10.9819761021484,8.258821591204,0,0,0,0,0,1.87333962322753,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0.192619830407303,0.214441591374926,0,1.58694147858591,0.231522474323834,1.46842022703881,0,0.308801447160972,0,0,0,0,0,0,0,37.8828115055742,0,0,0,0,0,0,0,0,0,0.567515953566836,7.73244991057731,0,0.622077260032973,0.127894371303652,0.215649622793364,0,0,0,0.637724760305049,0,0,0,0,0.80057074828547,0,0,38.2806181574899,46.759870187443,41.6644372139165,26.4600109870574,27.727886584389,30.7058200941127,36.8164472040621,4.28308260777463,0,0,0,0,0,0,0,1.20336525358812,0,0.781514011233092,0,0,0,26.6098083396475,37.4917487334647,41.3373593002368,27.3956300037677,40.4761358673482,0,0.496211178389294,0,0,1.60710550763486,1.68141861109412,54.0199387770602,56.0048990724192,0.0887023701626388,0,0,9.92358101461743,34.2676150262444,0,0.111231401892069,0.549451649953598,43.9923651764805,0,2.73947616152849,0,0,1.1436247068265,0,0,0.869291361512897,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0.102662806856247,2.3196288626764,2.91426595835484,0,0.198950775161368,13.3190501670877,0,0,0,0.154348316215889,2.18559560503957,0,0,0,8.83388102017254,12.1789024134105,12.2570160999186,0,0,0,0,0,0,0,0,0,10.7504687363588,0,29.6442897232388,28.3627948721245,2.645134202577,0,0,0,0,0,0,0.203977659483963,0.26721740526556,0.0918948995348449,0,1.97024615367422,1.07185652062471,14.0958804707992,17.5836092965222,0,1.42838658878244,0,0,0,0,0,0,0.684466602170562,0,0,1.33064142618405,0,0.106727345877715,0,0,4.69281884806909,0.122241444182866,1.62758471326295,0,0.402547587182052,0 | |||
|short_description=p1@LRRTM3 | |||
}} |
Revision as of 03:09, 11 January 2014
Short description: | p1@LRRTM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRTM3_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000373722, NM_178011, uc001jmy.2, uc001jmz.1_5end |
EntrezGene: | LRRTM3 |
HGNC: | 19410 |
UniProt: | Q86VH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.74e-10 | 8 |
neuron | 2.50e-07 | 6 |
neuroblast | 2.50e-07 | 6 |
electrically signaling cell | 2.50e-07 | 6 |