FFCP PHASE1:Hg19::chr12:8849887..8849912,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57494 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29228 | |||
|TSSclassifier=strong | |||
|UniProt=F5GZH5 | |||
|association_with_transcript=114bp_to_ENST00000541044_5end | |||
|coexpression_cluster_id=C12 | |||
|description=CAGE_peak_12_at_RIMKLB_5end | |||
|id=chr12:8849887..8849912,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000097;3.34e-21;5!CL:0002032;2.32e-12;1!CL:0000557;2.32e-12;1!CL:0000163;4.76e-12;9!CL:0000791;4.96e-10;18!CL:0000789;4.96e-10;18!CL:0002419;4.96e-10;18!CL:0000624;2.81e-08;6!CL:0000084;2.84e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,3.24e-21,5;CL:0002028,3.24e-21,5;CL:0000163,4.68e-12,9;CL:0000791,4.74e-10,18;CL:0000789,4.74e-10,18;CL:0002420,4.74e-10,18;CL:0002419,4.74e-10,18;CL:0000790,4.74e-10,18;CL:0000624,2.17e-08,6;CL:0000084,2.75e-07,25;CL:0000827,2.75e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.32e-12;1!CL:0000790;4.96e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.16e-08!57;UBERON:0005068!3.16e-08!57;UBERON:0006241!3.16e-08!57;UBERON:0007135!3.16e-08!57;UBERON:0001017!3.30e-08!82;UBERON:0007023!4.06e-08!115;UBERON:0000073!4.25e-08!94;UBERON:0001016!4.25e-08!94;UBERON:0001893!4.67e-08!34;UBERON:0005743!5.25e-08!86;UBERON:0001950!6.11e-08!20;UBERON:0001869!9.66e-08!32;UBERON:0002616!1.07e-07!59;UBERON:0002791!1.65e-07!33;UBERON:0002346!2.18e-07!90;UBERON:0002780!2.69e-07!41;UBERON:0001890!2.69e-07!41;UBERON:0006240!2.69e-07!41;UBERON:0002020!3.29e-07!34;UBERON:0003528!3.29e-07!34;UBERON:0003075!4.66e-07!86;UBERON:0007284!4.66e-07!86;UBERON:0003080!5.41e-07!42;UBERON:0002619!6.40e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.32e-12;1!UBERON:0001785;2.32e-12;1!UBERON:0002464;2.32e-12;1!UBERON:0004904;2.32e-12;1!UBERON:0001021;2.32e-12;1!UBERON:0003714;8.28e-07;2!UBERON:0005162;8.28e-07;2!UBERON:0000122;8.28e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.75e-12,1;UBERON:0001785,2.75e-12,1;UBERON:0002464,2.75e-12,1;UBERON:0004904,2.75e-12,1;UBERON:0001021,2.75e-12,1;UBERON:0003902,2.75e-12,1;UBERON:0005425,2.75e-12,1;UBERON:0003714,9.02e-07,2;UBERON:0005162,9.02e-07,2;UBERON:0000122,9.02e-07,2 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.619264493264304,0,0.30120591877825,0,0.0774672005803016,0,0.587200878669695,0.553995408531877,0.200544447470142,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545812300115692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425208599930087,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,2.64342657158052,1.68152568894461,1.84368859342554,1.57367816091066,0.786021525498329,1.64481199199607,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0.535081656179426,1.04535523804977,0,0.766440987203842,0.68725489096526,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,1.20964045934839,0.802320587350522,1.44824403882799,0,0,0,0,0,0,0,0,0.189069634328136,0,0.087834785693126,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.366403487860815,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0.355009592516614,0,0,0,0,0,0,0.265059536642971,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,1.44331342025273,0,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.176096868026452,5.39053100406007,2.73827911492227,5.17593977048158,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0.179060963239896,0,0.591092280605782,0.215627574859517,0.256686072559497,0.508189248444927,0,0.773288812777695,0.837581326671744,1.27587750330633,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522870902049801,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0.0890320356467374,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0.490080431962063,0,0.144269212976445,0.0711418433484141,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0.146508179271894,0,0,0,0,0,0.307160702099232,0,0,0.111308705022906,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0,0.591095237907095,0,0.10893846351899,0,0.230850775511391,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.471807930864739,0,0.234264445725339,0.182454789215666,0,0,0.394584402849391,0,0.30607276163049,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0.0730893170861856,0,0.0969890164884194,0,0,0.137041924646751,0,0.126621591911757,0.195551382734803,0,0.213452994739353,0.19980960958213,0,0,0,0,0,0.235694034616795,0,0,0,0,0.600420288709789,0.136905378891993,1.27746588066972,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0.321506296930038,0.275078873194468,0,0,0,0.182248669974074,0,0,0.104909176269996,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0,0.170388021785422,0.226624183040251,0,0,0.775697738169303,0,0,0,0,0.471612915298998,0,0,0,0,0.638341257770182,0.544017803369474,0.2506898940227,0,0.327872630709804,0,0,0.488105059607853,0.1251909307065,0.573409195690071,0.332787154610557,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0.310525913752519,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0.219284049578707,0,0,0.168942440653073,0,0.345430341731199,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0.123935764259002,0,0,0.47317047000752,0.80057074828547,0,0,0.0642292250964595,0,0.159633859057151,0.41023272848151,0.252071696221718,0.207471757392654,0,1.42769420259154,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0.126831620387814,1.64092442705466,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0.0657727735628491,0,0,0.078493092850514,0.314231179832004,0,0,0.431855182437243,0,0.214429632529969,0,0.23248285073625,0,0,0,0,0,0,0,0.170426809518315,0,0.22910686854405,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0.235676547101626,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0.203977659483963,0.26721740526556,0.36757959813938,1.25353769646188,0.151557396436479,0,0,0.103432995861895,0,0,0.129177819672012,0.124149428591716,0.33639558774184,0.0636471582781649,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0.733448665097199,0,0,0.402547587182052,0 | |||
|short_description=p12@RIMKLB | |||
}} |
Revision as of 11:58, 11 January 2014
Short description: | p12@RIMKLB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_RIMKLB_5end |
Coexpression cluster: | C12_Mast_Basophils_immature_chorionic_mature_CD14_Eosinophils |
Association with transcript: | 114bp_to_ENST00000541044_5end |
EntrezGene: | RIMKLB |
HGNC: | 29228 |
UniProt: | F5GZH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 3.24e-21 | 5 |
basophil mast progenitor cell | 3.24e-21 | 5 |
endocrine cell | 4.68e-12 | 9 |
mature alpha-beta T cell | 4.74e-10 | 18 |
alpha-beta T cell | 4.74e-10 | 18 |
immature T cell | 4.74e-10 | 18 |
mature T cell | 4.74e-10 | 18 |
immature alpha-beta T cell | 4.74e-10 | 18 |
CD4-positive, alpha-beta T cell | 2.17e-08 | 6 |
T cell | 2.75e-07 | 25 |
pro-T cell | 2.75e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.75e-12 | 1 |
cranial nerve | 2.75e-12 | 1 |
nerve trunk | 2.75e-12 | 1 |
nerve connecting eye with brain | 2.75e-12 | 1 |
nerve | 2.75e-12 | 1 |
retinal neural layer | 2.75e-12 | 1 |
presumptive neural retina | 2.75e-12 | 1 |
neural tissue | 9.02e-07 | 2 |
multi cell component structure | 9.02e-07 | 2 |
neuron projection bundle | 9.02e-07 | 2 |