FFCP PHASE1:Hg19::chr17:46688334..46688385,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3217 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5118 | |||
|TSSclassifier=strong | |||
|UniProt=P09629 | |||
|association_with_transcript=0bp_to_ENST00000239165,NM_004502,uc002inv.2_5end | |||
|description=CAGE_peak_1_at_HOXB7_5end | |||
|id=chr17:46688334..46688385,- | |||
|ontology_enrichment_celltype=CL:0000066!7.73e-14!254;CL:1000497!1.63e-10!18;CL:0002518!1.63e-10!18;CL:0000222!6.17e-10!119;CL:1000449!8.47e-10!16;CL:0000213!1.40e-09!57;CL:0000215!1.40e-09!57;CL:0002139!1.96e-08!24;CL:1000507!3.96e-08!12;CL:1000494!3.96e-08!12;CL:0002681!4.73e-08!13;CL:0002584!4.73e-08!13;CL:0002078!1.63e-07!44;CL:0000115!5.53e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:1000497;6.08e-11;17!CL:0002518;6.08e-11;17!CL:1000449;4.41e-10;15!CL:1000507;4.42e-08;10!CL:1000494;4.42e-08;10!CL:0002681;4.58e-08;12!CL:0002584;4.58e-08;12!CL:0002139;4.98e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.46e-16,253;CL:1000497,7.04e-11,17;CL:0002518,7.04e-11,17;CL:0000213,1.73e-10,58;CL:0000215,1.73e-10,58;CL:1000449,4.77e-10,15;CL:0000222,5.20e-10,121;CL:0002078,1.61e-08,45;CL:1000507,4.75e-08,10;CL:1000494,4.75e-08,10;CL:0002681,4.84e-08,12;CL:0002584,4.84e-08,12;CL:0002139,4.97e-08,24;CL:0000115,1.59e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.50e-12!143;DOID:14566!3.70e-11!239;DOID:162!5.70e-11!235;DOID:305!5.23e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,5.84e-14,143;DOID:14566,7.13e-12,239;DOID:162,1.09e-11,235;DOID:305,4.60e-10,106 | |||
|ontology_enrichment_uberon=UBERON:0002100!3.11e-13!216;UBERON:0000489!4.78e-13!32;UBERON:0009569!3.22e-11!113;UBERON:0003886!4.16e-11!63;UBERON:0000080!4.81e-11!18;UBERON:0002120!4.81e-11!18;UBERON:0004875!4.81e-11!18;UBERON:0005721!4.81e-11!18;UBERON:0005754!4.81e-11!18;UBERON:0007297!4.81e-11!18;UBERON:0002417!8.81e-11!61;UBERON:0000916!8.81e-11!61;UBERON:0002113!9.79e-11!27;UBERON:0003918!9.79e-11!27;UBERON:0005095!9.79e-11!27;UBERON:0007687!9.79e-11!27;UBERON:0000058!1.14e-10!26;UBERON:0003887!1.16e-10!21;UBERON:0006555!1.60e-10!17;UBERON:0005103!1.60e-10!17;UBERON:0000083!1.60e-10!17;UBERON:0009201!1.60e-10!17;UBERON:0004819!1.60e-10!17;UBERON:0006553!1.60e-10!17;UBERON:0003074!1.60e-10!17;UBERON:0003060!1.60e-10!17;UBERON:0001008!1.82e-10!45;UBERON:0006554!3.14e-10!44;UBERON:0005177!6.22e-10!107;UBERON:0004211!8.47e-10!16;UBERON:0001285!8.47e-10!16;UBERON:0007684!8.47e-10!16;UBERON:0003220!8.47e-10!16;UBERON:0004208!8.47e-10!16;UBERON:0004876!8.98e-10!20;UBERON:0003064!6.06e-09!37;UBERON:0001851!1.75e-08!16;UBERON:0005172!1.80e-08!55;UBERON:0005173!1.80e-08!55;UBERON:0003104!1.82e-08!238;UBERON:0009142!1.82e-08!238;UBERON:0002553!2.47e-08!70;UBERON:0009773!3.96e-08!12;UBERON:0001231!3.96e-08!12;UBERON:0004810!3.96e-08!12;UBERON:0001225!4.73e-08!13;UBERON:0008987!4.73e-08!13;UBERON:0000353!1.96e-07!17;UBERON:0000464!2.30e-07!104;UBERON:0005256!4.22e-07!143;UBERON:0000055!4.24e-07!69;UBERON:0000466!6.63e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;2.52e-12;29!UBERON:0006554;3.37e-11;30!UBERON:0001008;3.37e-11;30!UBERON:0006555;4.41e-10;15!UBERON:0004819;4.41e-10;15!UBERON:0001285;4.41e-10;15!UBERON:0007684;4.41e-10;15!UBERON:0002113;1.09e-09;24!UBERON:0011143;1.09e-09;24!UBERON:0001851;1.15e-08;15!UBERON:0000353;1.93e-08;15!UBERON:0004211;4.42e-08;10!UBERON:0009773;4.42e-08;10!UBERON:0001231;4.42e-08;10!UBERON:0004810;4.42e-08;10!UBERON:0001225;4.58e-08;12!UBERON:0008987;4.58e-08;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,1.36e-13,31;UBERON:0002100,4.16e-12,199;UBERON:0002113,5.91e-11,26;UBERON:0003918,5.91e-11,26;UBERON:0011143,5.91e-11,26;UBERON:0005095,5.91e-11,26;UBERON:0007687,5.91e-11,26;UBERON:0006555,7.08e-11,16;UBERON:0004819,7.08e-11,16;UBERON:0003104,1.47e-10,160;UBERON:0009142,1.47e-10,160;UBERON:0002417,1.81e-10,60;UBERON:0000916,1.81e-10,60;UBERON:0004211,4.77e-10,15;UBERON:0009773,4.77e-10,15;UBERON:0001231,4.77e-10,15;UBERON:0001285,4.77e-10,15;UBERON:0007684,4.77e-10,15;UBERON:0004208,4.77e-10,15;UBERON:0009569,6.97e-10,112;UBERON:0001008,5.61e-09,48;UBERON:0006554,1.02e-08,47;UBERON:0001851,1.42e-08,15;UBERON:0000353,1.68e-08,15;UBERON:0004810,4.75e-08,10;UBERON:0001225,4.84e-08,12;UBERON:0008987,4.84e-08,12;UBERON:0005172,5.86e-08,54;UBERON:0005173,5.86e-08,54;UBERON:0000058,3.17e-07,19 | |||
|phase1_expression=6.90377841228115,5.78071414505655,10.7125347112938,9.00659685178174,6.70441641640932,1.74467704820074,2.53299878168311,8.84407822797563,2.87304191019822,1.72013755551056,0.697801167972428,0.655324116390517,0.263766978228454,10.2726072956839,7.95353701746998,6.72325146451775,6.62963980826375,8.76372108464848,9.75865597581014,0.123121058076788,0.204000691244253,0,0,0,0,2.8272960126742,5.41863890369642,3.85682828437028,0.393364276848904,0,0.309632246632152,0,0.6024118375565,0,1.23947520928483,3.2698923472107,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0.205601498999509,0.167186495390678,0,0,0,0,0.294605907474837,0,0.270803863765016,0.640456598628376,0.520237390239513,0.657751618414705,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,2.29213382120997,0,0,0,0.174129737299267,0,0.476981248610684,0.571994910780128,0,0.198762407366705,0,0.694281003215189,0,0.419499436209906,3.30141650328081,0.626984899610432,37.4704300795527,29.8843660656837,24.0998841190563,16.9188313185842,23.5684352772739,7.80998584154142,9.55924008899259,18.6332648012805,21.7891337013155,10.7774098860562,8.1080265947992,19.9311628705648,14.2389848935219,16.6713586976671,0,0,0,0.993943903390637,0.506522046658319,1.85372853138506,0.286836620748814,1.41867352879343,0,0,0,0,0,0.163461903113459,0,0,0,0,0.570471821544449,9.11636951365987,3.64046945795671,5.82742599725274,6.74163872170793,0,0,0,0,0,4.55080680969013,5.03032699271367,0,0,0,0,0,0,0.340296549480063,1.4351170855109,1.2813443329114,0.423863802319124,3.30100205692843,2.47326070172253,0.515281080091258,1.48893485065272,7.59493495085698,5.26159827870473,2.27190396819703,3.58994604704967,0,0.710019185033229,1.41052937518696,0,0,0,0,0.121973706129595,0,0.464775771478074,0.310983165046111,0.252320850875628,0,0,1.92972281457866,2.76269842704961,8.35862270457562,7.21879481669586,6.7434876022711,6.74338760312407,4.09718750801919,6.50734439121124,4.35758888184812,6.64357733511071,6.47190279168789,5.29797955838434,4.23221872641029,2.95262181849859,2.80483547606892,1.2347220339942,2.94017422771084,0,0,1.18157981336281,0,7.62528318967304,0,0,0,0.100528972411631,0,0,0,1.44331342025273,0,0,18.4789053134174,13.8895653772983,18.2643986145214,1.58040879591855,1.71697232418975,0,0,0,0,0.16798212819886,0,0.268675568108545,0,0,0,0.264145302039678,0,0.432359860250884,0.75745460055828,5.58781469771088,20.2453865545887,8.20522130470329,20.5286935227246,10.6940592411456,19.5222987598546,19.1503709862487,0,0,0,14.2198887333556,7.15312891703765,2.535908257668,0.26593811658487,0,0.514414748524284,2.83698264046557,0.532844358032199,0.428933980974443,3.7983512377401,4.93944202068461,1.62868092146868,0.710783897485092,1.58390374586686,9.64606006590676,4.35766729300147,7.19805536510811,0,0,0,0,0,0,5.35690834670043,0.821905290201534,7.34149949283572,2.80212859983818,0.197030760201927,0,0.256686072559497,0,0,0,0,0,0,0,0,11.6556917133183,29.5100607425209,11.1218659716892,0,0,0,0,1.80567659836631,0,0,0.664225598535437,0.553107505625109,0,0,0,0,0,0.213455115606889,0,0,0.604780586659361,4.96215615637554,5.06424511850606,6.73584226639377,10.7636885374789,11.7692667285342,9.81208918976006,1.48418066444991,9.09837193435668,4.43904313282818,8.45909706942234,2.59627214591811,8.36714724911707,15.7117284469109,5.81468763879526,1.47329582297434,0,0,0.524497659837696,9.02399225814824,10.3200551719916,10.1965469992991,20.4594914514565,14.5661247872168,32.98268138056,30.6168669497728,16.4096096237626,29.303178011155,17.3405720028066,20.0675909541941,11.2145560139817,9.97291210714469,15.6712328305525,0,0,0,0,0,2.26690225624989,8.60752969292428,7.42585499285292,0,0,0,1.25671933779759,2.46477787383431,0.921022048356777,0.551346289938122,0,0.435050081742686,2.47157219506693,1.24644849905432,0,0,0,0,1.39453664789186,2.51849877464512,2.0911118104818,5.23657086299351,0,0.869932992075073,0.18532421910392,0,0,1.58189712359363,1.90630193923825,6.90924036540602,5.56320684444097,0,0,5.57604618508276,4.39259247577688,4.3590588867904,0.606547444719948,0,0,0,12.6731014608268,4.22600587027022,0.136499911407986,0.141405431953713,1.13008116620243,1.65409603063837,0,0.438450885253763,5.20897980840019,1.9676842561399,9.33387734028438,5.26699946769575,3.09865162785466,6.74033355359042,4.32295780457733,13.9101710077688,0.709522128141196,0,0,0,0,0,0.670302275535787,0,2.16530741786592,7.74909670808214,6.73885902670502,2.21715076768338,2.75668080248351,0,0,0,0,0,0,0,0,0.854592569019785,0,1.96032172784825,0,0,0,3.66680427276291,0,0,0.423347165447766,0,1.12318871245384,0,0,0,0.338583555603207,0.802940375518498,0,0.425846237690326,0,0,0.223676107892416,0.166849141711909,0,0,0,0,0,0,1.68426486367398,3.80921266106924,1.09224469574562,5.46072582959644,16.7640326615784,0.23874448473769,0.890894042497916,0,0,0,0,0.329607748453519,0,3.58646378851925,3.31540698637377,1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| |||
|short_description=p1@HOXB7 | |||
}} |
Revision as of 16:01, 20 January 2014
Short description: | p1@HOXB7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXB7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000239165, NM_004502, uc002inv.2_5end |
EntrezGene: | HOXB7 |
HGNC: | 5118 |
UniProt: | P09629 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.46e-16 | 253 |
kidney cell | 7.04e-11 | 17 |
kidney epithelial cell | 7.04e-11 | 17 |
lining cell | 1.73e-10 | 58 |
barrier cell | 1.73e-10 | 58 |
epithelial cell of nephron | 4.77e-10 | 15 |
mesodermal cell | 5.20e-10 | 121 |
meso-epithelial cell | 1.61e-08 | 45 |
kidney tubule cell | 4.75e-08 | 10 |
nephron tubule epithelial cell | 4.75e-08 | 10 |
kidney cortical cell | 4.84e-08 | 12 |
renal cortical epithelial cell | 4.84e-08 | 12 |
endothelial cell of vascular tree | 4.97e-08 | 24 |
endothelial cell | 1.59e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 1.36e-13 | 31 |
trunk | 4.16e-12 | 199 |
kidney | 5.91e-11 | 26 |
kidney mesenchyme | 5.91e-11 | 26 |
upper urinary tract | 5.91e-11 | 26 |
kidney rudiment | 5.91e-11 | 26 |
kidney field | 5.91e-11 | 26 |
excretory tube | 7.08e-11 | 16 |
kidney epithelium | 7.08e-11 | 16 |
mesenchyme | 1.47e-10 | 160 |
entire embryonic mesenchyme | 1.47e-10 | 160 |
abdominal segment of trunk | 1.81e-10 | 60 |
abdomen | 1.81e-10 | 60 |
nephron epithelium | 4.77e-10 | 15 |
renal tubule | 4.77e-10 | 15 |
nephron tubule | 4.77e-10 | 15 |
nephron | 4.77e-10 | 15 |
uriniferous tubule | 4.77e-10 | 15 |
nephrogenic mesenchyme | 4.77e-10 | 15 |
subdivision of trunk | 6.97e-10 | 112 |
renal system | 5.61e-09 | 48 |
urinary system structure | 1.02e-08 | 47 |
cortex | 1.42e-08 | 15 |
parenchyma | 1.68e-08 | 15 |
nephron tubule epithelium | 4.75e-08 | 10 |
cortex of kidney | 4.84e-08 | 12 |
renal parenchyma | 4.84e-08 | 12 |
abdomen element | 5.86e-08 | 54 |
abdominal segment element | 5.86e-08 | 54 |
duct | 3.17e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 5.84e-14 | 143 |
disease of cellular proliferation | 7.13e-12 | 239 |
cancer | 1.09e-11 | 235 |
carcinoma | 4.60e-10 | 106 |