FFCP PHASE1:Hg19::chr17:73717624..73717635,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3691 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6158 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=35bp_to_uc002jpi.3,uc010dgo.2_5end | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_3_at_ITGB4_5end | |||
|id=chr17:73717624..73717635,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.86e-31!254;CL:0002076!3.49e-22!43;CL:0000223!4.75e-17!59;CL:0002251!2.02e-11!21;CL:0002368!3.87e-11!13;CL:0000076!3.78e-08!62;CL:0002202!1.20e-07!9;CL:0002632!1.20e-07!9;CL:0002159!9.22e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.84e-20;42!CL:0002251;3.54e-16;20!CL:0002368;2.29e-13;13!CL:0002159;8.06e-10;14!CL:0000622;3.00e-08;5!CL:0002202;4.44e-08;9!CL:0002632;4.44e-08;9!CL:0000244;1.92e-07;4!CL:0000731;1.92e-07;4!CL:0000154;9.69e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.09e-37,253;CL:0002076,3.49e-27,42;CL:0000223,2.89e-22,58;CL:0002251,3.69e-16,20;CL:0002368,2.55e-13,13;CL:0000076,1.12e-12,63;CL:0002159,8.22e-10,14;CL:0000622,3.14e-08,5;CL:0002202,4.94e-08,9;CL:0002632,4.94e-08,9;CL:0002321,6.47e-08,250;CL:0000244,1.90e-07,4;CL:0000731,1.90e-07,4;CL:0002077,4.00e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000223;6.02e-12;58 | |||
|ontology_enrichment_disease=DOID:305!1.66e-14!106;DOID:1749!2.04e-09!14;DOID:299!5.81e-09!25;DOID:0050687!6.24e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.81e-14;14!DOID:299;2.78e-10;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.20e-14,14;DOID:305,1.04e-12,106;DOID:299,2.35e-10,25;DOID:0050687,5.97e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.45e-21!169;UBERON:0000925!3.45e-21!169;UBERON:0006595!3.45e-21!169;UBERON:0000064!1.88e-16!219;UBERON:0001007!9.37e-15!155;UBERON:0001555!9.37e-15!155;UBERON:0007026!9.37e-15!155;UBERON:0000153!1.23e-14!129;UBERON:0007811!1.23e-14!129;UBERON:0004121!2.12e-14!169;UBERON:0000033!2.97e-14!123;UBERON:0000062!3.30e-14!511;UBERON:0007023!1.14e-13!115;UBERON:0000924!2.04e-13!173;UBERON:0006601!2.04e-13!173;UBERON:0001004!4.01e-12!72;UBERON:0004921!6.11e-12!129;UBERON:0004185!6.11e-12!129;UBERON:0000077!2.01e-11!130;UBERON:0000481!2.99e-10!347;UBERON:0003075!5.09e-10!86;UBERON:0007284!5.09e-10!86;UBERON:0000464!7.07e-10!104;UBERON:0000475!1.67e-09!365;UBERON:0000468!5.63e-09!659;UBERON:0002346!6.87e-09!90;UBERON:0001041!8.36e-09!98;UBERON:0001049!1.22e-08!57;UBERON:0005068!1.22e-08!57;UBERON:0006241!1.22e-08!57;UBERON:0007135!1.22e-08!57;UBERON:0000467!1.72e-08!625;UBERON:0000922!2.16e-08!612;UBERON:0000480!2.23e-08!626;UBERON:0005743!5.38e-08!86;UBERON:0000161!6.32e-08!35;UBERON:0002050!9.23e-08!605;UBERON:0005423!9.23e-08!605;UBERON:0000063!9.42e-08!97;UBERON:0005153!1.13e-07!37;UBERON:0005157!1.27e-07!51;UBERON:0005409!1.28e-07!35;UBERON:0000923!1.61e-07!604;UBERON:0005291!1.61e-07!604;UBERON:0006598!1.61e-07!604;UBERON:0002532!1.61e-07!604;UBERON:0002075!1.99e-07!18;UBERON:0000065!2.02e-07!53;UBERON:0000166!2.16e-07!21;UBERON:0001017!2.68e-07!82;UBERON:0005631!3.17e-07!14;UBERON:0000158!3.17e-07!14;UBERON:0002616!3.43e-07!59;UBERON:0005911!3.70e-07!82;UBERON:0000955!3.75e-07!69;UBERON:0006238!3.75e-07!69;UBERON:0000466!4.36e-07!126;UBERON:0005178!7.40e-07!34;UBERON:0002224!7.40e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;1.27e-09;12!UBERON:0005910;2.01e-09;6!UBERON:0000161;7.55e-09;19!UBERON:0000166;7.55e-09;19!UBERON:0000365;1.27e-08;5!UBERON:0005911;1.45e-08;36!UBERON:0004807;2.34e-08;22!UBERON:0005631;1.31e-07;10!UBERON:0000158;1.31e-07;10!UBERON:0001264;1.40e-07;10!UBERON:0000165;5.40e-07;28!UBERON:0002075;7.12e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.36e-16,160;UBERON:0000925,7.36e-16,160;UBERON:0006595,7.36e-16,160;UBERON:0001004,1.09e-11,74;UBERON:0005631,3.42e-11,14;UBERON:0000158,3.42e-11,14;UBERON:0000033,1.31e-09,56;UBERON:0005910,2.02e-09,6;UBERON:0001007,7.67e-09,145;UBERON:0001555,7.67e-09,145;UBERON:0007026,7.67e-09,145;UBERON:0000153,1.04e-08,62;UBERON:0007811,1.04e-08,62;UBERON:0000365,1.18e-08,5;UBERON:0000166,2.62e-08,22;UBERON:0003124,4.80e-08,7;UBERON:0001444,8.01e-08,49;UBERON:0001264,1.04e-07,10;UBERON:0000161,2.64e-07,36;UBERON:0002075,5.55e-07,18;UBERON:0005178,8.92e-07,34;UBERON:0002224,8.92e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,1.39560233594486,10.7036272343784,7.91300934685361,0,0,0,0,0,0,1.47745269692145,1.42800483870977,4.70182082217132,1.43117993565528,1.09499540058307,1.38096903554283,0,0,0,0,0,0.464448369948228,14.7107395916628,21.3856202332558,34.0173689353445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,1.51255707462509,0.665188192387692,1.22968699970376,0.327447688744282,44.0797298833976,17.7976532536526,0,0,0,0,0,0,0,0,0.347140501607594,2.26123176769604,0,0,0,0.258416759169329,0,0,0.402829317109147,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,28.3461133892647,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.302714855289863,0,0,0,1.1409436430889,0,0,0.161872944368132,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.1486930934743,21.5469435266759,26.6728273711774,0.121973706129595,0.265059536642971,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.737930631258681,3.43135620597051,22.3890582233596,24.7283857166763,8.74602059981188,20.6472232703521,0,0,0,2.78232971940184,0.234817388471643,0,0,0,11.0628615714299,11.1603201072333,0,0,0,10.3107217385455,22.5096051786472,13.0433089462996,26.2406471519345,14.2410629871841,18.0189859207649,0,0,0.207328115540772,0,0,0,0,0,3.4214489204541,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79951384127703,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0.184369168541703,0,3.72022199179207,0,0,0,0,3.03127571446259,6.65741758041988,2.72151263996712,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,42.1063587636898,4.23572549105123,0,0,0,1.35359883872224,0.308061348417659,0,0,0,0,0,0,0,0.270946437543853,0,0.509752546090077,0.831076008928724,1.11937377361089,0,0,0,3.28014645699706,0.976135183992909,0.515205058238611,0,0.082509499920588,20.099293829866,16.251506150913,0,0,0,0,0,0,0,0,0,32.7264132414737,24.2159484880034,24.7568662239493,14.8701937857658,0,0,0,0,0,0,0,0,0.744316738719335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5330888832789,24.1308819192883,28.3116560639439,1.41215701165169,41.3285157764381,21.9012918367913,35.4744122829341,27.1073612244212,0,0,0,0,0,0,0,0,0,0,7.84128691139301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8071081061233,0.439524537815682,0,0,0.284136146806413,9.07229042003222,3.26661148915902,8.29333895667927,0.994147647766298,0.422008249231538,0,0,0,0.597743964753209,0.828851746593443,0,0.102268682502155,0,0,4.22381250392436,0.537063524026827,0,0.887790650732402,0,0,0.969332746095218,0.556608588971108,0,3.9064164162785,0.349839999984783,0,5.00691172456199,3.0510438035132,4.49136595359079,0,0,0,0,0.60298219312704,3.05163472634166,0.331737779793674,0,0.87754158861589,0,11.8510182636813,1.15425387755696,0,1.84451123510448,4.57763986489838,0.760531603454056,1.5950057986596,4.39668448328939,4.26427820814908,0,0,0,0,0,0,0,0,0,0.816164040795739,0.565412285735763,0,3.98104772431402,3.09601475761687,1.22206028986725,0,0,0,0.606610196826093,0,0.234264445725339,0,1.9566461893209,4.85560759068186,0.394584402849391,0,0,0.505492637027904,0,0,9.30515421790059,1.65495977937749,7.84832296018063,9.55779438183671,0.284609546029793,0,0.173559738335131,9.30927775436588,3.3953090566357,1.57254001417827,0,0.387025325156341,0.803982487948041,0.328461828212837,0.969890164884194,0,0.677942222341597,0,0,0.189932387867636,3.32437350649165,0.961905843018405,4.69596588426576,2.99714414373195,5.04316460039371,0,0,1.00838358591705,0.745515213392595,7.07082103850386,0.271808412147228,0.104602846312333,0,0,0.600420288709789,0.136905378891993,0,0,0,0.279282401272254,0.229160424011684,0,0.599037001496973,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.681017030557878,0,0,0,0,0,0.182248669974074,12.4110834411728,0.157611414598396,0,0,0,12.2825726284445,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.39669780522807,1.19760786519031,6.34333520085005,0.213574825135389,0.157204305099666,0.414239055347196,1.9846640872478,0,0.121792598380896,6.38341257770182,0,0,0,0,1.09937867375164,0,0.122026264901963,0.3755727921195,4.58727356552057,0.998361463831671,1.4903136705932,0,4.74925550256005,0,0,4.70531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537052785212442,0,0,0.400027764663154,0,0,0,0,8.3632220636221,2.3489486276869,0,0.231522474323834,1.71315693154527,11.6407746702967,4.94082315457555,3.28926074368061,0,9.45278787527482,1.68942440653073,0,0,0.607719912354764,0.553033744606923,0,0,0,0,0,9.72035767449684,0,0,0,0.567515953566836,0,6.15469833965556,18.0402405409562,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.319267718114302,0.41023272848151,0,0.345786262321089,0.322951291263702,0,11.58143078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| |||
|short_description=p3@ITGB4 | |||
}} |
Revision as of 17:21, 20 January 2014
Short description: | p3@ITGB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ITGB4_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 35bp_to_uc002jpi.3, uc010dgo.2_5end |
EntrezGene: | ITGB4 |
HGNC: | 6158 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.09e-37 | 253 |
endo-epithelial cell | 3.49e-27 | 42 |
endodermal cell | 2.89e-22 | 58 |
epithelial cell of alimentary canal | 3.69e-16 | 20 |
respiratory epithelial cell | 2.55e-13 | 13 |
squamous epithelial cell | 1.12e-12 | 63 |
general ecto-epithelial cell | 8.22e-10 | 14 |
acinar cell | 3.14e-08 | 5 |
epithelial cell of tracheobronchial tree | 4.94e-08 | 9 |
epithelial cell of lower respiratory tract | 4.94e-08 | 9 |
embryonic cell | 6.47e-08 | 250 |
transitional epithelial cell | 1.90e-07 | 4 |
urothelial cell | 1.90e-07 | 4 |
ecto-epithelial cell | 4.00e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.36e-16 | 160 |
endoderm | 7.36e-16 | 160 |
presumptive endoderm | 7.36e-16 | 160 |
respiratory system | 1.09e-11 | 74 |
extraembryonic membrane | 3.42e-11 | 14 |
membranous layer | 3.42e-11 | 14 |
head | 1.31e-09 | 56 |
transitional epithelium | 2.02e-09 | 6 |
digestive system | 7.67e-09 | 145 |
digestive tract | 7.67e-09 | 145 |
primitive gut | 7.67e-09 | 145 |
anterior region of body | 1.04e-08 | 62 |
craniocervical region | 1.04e-08 | 62 |
urothelium | 1.18e-08 | 5 |
oral opening | 2.62e-08 | 22 |
chorion | 4.80e-08 | 7 |
subdivision of head | 8.01e-08 | 49 |
pancreas | 1.04e-07 | 10 |
orifice | 2.64e-07 | 36 |
viscus | 5.55e-07 | 18 |
thoracic cavity element | 8.92e-07 | 34 |
thoracic cavity | 8.92e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.20e-14 | 14 |
carcinoma | 1.04e-12 | 106 |
adenocarcinoma | 2.35e-10 | 25 |
cell type cancer | 5.97e-08 | 143 |