FFCP PHASE1:Hg19::chr18:45457909..45457939,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4087 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6768 | |||
|TSSclassifier=strong | |||
|UniProt=Q15796 | |||
|association_with_transcript=-394bp_to_ENST00000356825,NM_001135937,uc002lcz.2,uc010xdc.1,uc010xdd.1_5end | |||
|description=CAGE_peak_8_at_SMAD2_5end | |||
|id=chr18:45457909..45457939,- | |||
|ontology_enrichment_celltype=CL:0000037!1.35e-19!172;CL:0000566!1.35e-19!172;CL:0002032!2.70e-19!165;CL:0000837!2.70e-19!165;CL:0000988!2.71e-17!182;CL:0002087!3.14e-16!119;CL:0002031!6.80e-15!124;CL:0000763!2.59e-14!112;CL:0000049!2.59e-14!112;CL:0000738!1.77e-13!140;CL:0002009!7.68e-13!65;CL:0002194!1.83e-12!63;CL:0000576!1.83e-12!63;CL:0000040!1.83e-12!63;CL:0000559!1.83e-12!63;CL:0000860!5.94e-12!45;CL:0000839!1.32e-10!70;CL:0000557!1.89e-10!71;CL:0002057!2.91e-10!42;CL:0000063!2.74e-09!578;CL:0000766!6.53e-09!76;CL:0000012!6.29e-08!682;CL:0000548!8.35e-08!679;CL:0000004!8.35e-08!679;CL:0000255!8.35e-08!679 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.87e-10;33!CL:0002057;5.87e-10;33!CL:0000473;5.45e-09;39!CL:0000234;5.45e-09;39!CL:0000576;4.09e-08;48!CL:0002322;8.60e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002032,1.33e-14,161;CL:0000837,1.33e-14,161;CL:0000037,3.12e-14,168;CL:0000988,9.48e-13,177;CL:0000763,2.29e-12,108;CL:0000049,2.29e-12,108;CL:0002087,3.44e-10,115;CL:0002009,1.07e-09,61;CL:0000473,1.37e-09,48;CL:0000234,1.37e-09,48;CL:0002031,2.34e-09,120;CL:0000860,2.90e-09,42;CL:0002057,2.90e-09,42;CL:0002194,3.75e-09,59;CL:0000576,3.75e-09,59;CL:0000040,3.75e-09,59;CL:0000559,3.75e-09,59;CL:0000738,1.78e-08,136;CL:0002322,2.71e-08,5;CL:0000557,2.95e-08,67;CL:0000839,1.52e-07,66 | |||
|ontology_enrichment_development_v019=CL:0002057;1.14e-07;42!UBERON:0008947;4.08e-07;29 | |||
|ontology_enrichment_disease=DOID:162!5.65e-15!235;DOID:14566!2.64e-14!239;DOID:2531!2.36e-11!51;DOID:0060083!2.36e-11!51;DOID:305!1.09e-10!106;DOID:1240!2.94e-09!39;DOID:0050687!1.86e-08!143;DOID:0050686!6.54e-08!137;DOID:8692!3.68e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;4.14e-10;39!DOID:2531;6.35e-09;51!DOID:0060083;6.35e-09;51!DOID:8692;1.21e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.58e-14,235;DOID:14566,3.05e-13,239;DOID:2531,4.10e-13,51;DOID:0060083,4.10e-13,51;DOID:1240,2.12e-11,39;DOID:0050686,1.03e-08,137;DOID:305,1.96e-08,106;DOID:8692,6.58e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.71e-08!80;UBERON:0001474!7.80e-08!86;UBERON:0002405!1.79e-07!115;UBERON:0001737!7.80e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.56e-12;9!UBERON:0001557;7.56e-12;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.71e-12,9;UBERON:0001557,1.82e-07,19;UBERON:0002371,2.91e-07,76 | |||
|phase1_expression=0,0,0.140954404095971,0,1.34088328328186,0,0,0,0.522371256399677,0,0,0.218441372130172,0.791300934685361,0.37129905888014,0,0,0,0,0.487932798790507,0,0.408001382488506,0.313454721478088,0,0.273748850145768,0.125542639594803,0.458480434487708,0.410502947249729,0.550975469195755,0.393364276848904,0,0.154816123316076,0,0.6024118375565,0.369754010166788,4.9579008371393,0.426507697462265,0.587200878669695,0,1.00272223735071,0.868043482863407,1.11957737119962,1.94336199611388,1.54545340580512,0.145398238779565,0,1.21292030593908,1.39457422143411,1.6446715520873,1.23882548358041,1.1507695692886,1.0246428261164,0.945928919554341,1.03423704220986,0,5.41705946377367,0.941211697713023,1.36453075028923,0.449446968890169,0.918251677112708,1.60464513538047,2.55734850319616,1.64925650093358,1.39624560335142,2.13112375266347,0.290209238628584,3.97169657283798,0.622822248995575,1.25624332628372,2.08593167368081,0.65156653411535,0.605399502633369,0.368277635987565,1.58231193720442,0.422510572623884,0.425208599930087,1.04829322754188,0.673971786878971,0.600707571366025,0.16072558669708,0.570025487482497,0.39783335439818,0.547992461293902,0,0.546138611262131,0,2.98711155796555,0,1.14950487990897,1.32208974556972,0,1.1384259382189,1.17447437874188,0.764546456250458,0,1.12101712596307,0.263384084775077,0.786839080455332,0.786021525498329,0.205601498999509,0.334372990781356,0.32592226663359,0.946895611469467,0,0.334231370655521,0.294605907474837,0.221533894583621,0,0.128091319725675,0,0,0,0.289803085735052,0,0,0,0.453237370790265,0.383220493601921,0,0.253019692019503,0,0.651083453856419,0,0.150575119077773,0.383959833463255,0,0,1.64225599384209,0.201606743224732,0.534880391567015,0.868946423296794,2.43806866313962,0,0.12786256184353,0.361439152384566,0.50133791063589,0.434539556882471,0,0,0.0945348171640679,0.221729397462564,0.43917392846563,0.196468613246569,0.364295288292542,0.370784442784429,0.324547393654683,0.696518949197069,0.797747763113191,0.476981248610684,0,0.74291500265913,0,0,0,0,0,0.825354125820202,0,0.775250277507987,0,0,0,0,0.732186172644509,0,0,0.267899184852239,0.22452937262617,0.225222960966644,1.53316637465883,0,0.183201743930407,0,0,0,0,0.25326102332916,0.264818361626438,0.286836620748814,0,1.12135520028461,0,0.49333509683432,0.311211035399766,0.269421344139376,0,0.302714855289863,0.576175924479999,0.468642863667593,0,0,0,0.352303495931295,0.647491777472526,0.140450806702248,0.61246251376468,0.368502951935304,0.413303124703062,0,0.741800787835671,0,0,0,0.250237039743928,0,0,0.612975591598039,0.45071417671979,0,0.179389635688862,0,0.211931901159562,0.300091096084402,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0.252433774244115,0.276149695926898,0.161646056818812,0.355009592516614,0.10075209822764,0,0,0.272746120590835,0.860413786167011,1.34171076742555,3.44577397635862,1.74290914304278,1.65857688024593,1.51392510525377,4.37972830890996,0,0,0,0,0,0.828147600278907,3.20310911148393,2.16909926895134,2.09558548191549,2.61455332910887,2.84724742933316,2.02246962240247,1.96221465125346,3.8474715694639,0,0,0,0,0,1.96565443335525,0,3.09024169590255,0.122988438543114,0.686271241194102,0.109750285408626,0,0,0.0925884451585296,0.325808305310325,1.03993478527958,1.44331342025273,0.927443239800615,0.234817388471643,0,0,0.570762456703795,0.790204397959275,0.858486162094873,0.738651018262192,0.234004265139238,0.297262324577456,0,0.16798212819886,0,0.358234090811393,0,0.766765358330422,0,0,0,0.144119953416961,0.37872730027914,0.190493682876507,0,1.17217447210047,0,0,0.300343057843917,0,0.112131084345361,0.43596006883328,0.22001485746285,0,0,0,0,0,0,1.41849132023278,0,0.142977993658148,0.542621605391443,0.823240336780769,0,0.710783897485092,0,0.301439377059586,0,0.399891964728228,2.43247561282381,1.50677127429638,0,0,0,1.42636905040718,0,0,0,0.896681151948218,0.591092280605782,0,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0.414415513436035,0,0,0,0.207970861530807,0.356857977594324,0.630809660135739,0.117141414992713,0,0,1.03473071292505,0,0.368738337083406,0.434418072340414,0.195801157462741,0,0.413536052245775,0.215714200818617,0.106727557803444,0.909382714338778,0,0.907170879989041,0,0,0.280660094433074,0.128139149255701,0,0.160853921143607,0,0.308419387605311,0.177561725313127,0,0,0.116210378459959,0.362578348774867,0.40101294060657,0.368323955743585,0,0.182091168006717,0.393373244878272,0,0.0770153371044148,0,0,0.211103257785751,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0,1.66215201785745,0.223874754722178,0.438519753291869,0.261435451024901,0.256450125116389,0.656029291399411,0.976135183992909,0.206082023295445,0.54941678891006,0.495056999523528,0,0.650060246036521,0,0.386682873168488,0.462145851343933,0.15350367472613,0,0.322260734604821,0.290033387828457,0.170453254832202,0.534192213880424,0,0.576570202095319,0.510450849978337,0.50578890427775,0,0.31481234683064,0.6970372701606,0.308033580176089,0,0,0,0.143124886741991,0.744316738719335,0,0.190630193923825,0,0.427938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| |||
|short_description=p8@SMAD2 | |||
}} |
Revision as of 19:16, 20 January 2014
Short description: | p8@SMAD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SMAD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -394bp_to_ENST00000356825, NM_001135937, uc002lcz.2, uc010xdc.1, uc010xdd.1_5end |
EntrezGene: | SMAD2 |
HGNC: | 6768 |
UniProt: | Q15796 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic oligopotent progenitor cell | 1.33e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.33e-14 | 161 |
hematopoietic stem cell | 3.12e-14 | 168 |
hematopoietic cell | 9.48e-13 | 177 |
myeloid cell | 2.29e-12 | 108 |
common myeloid progenitor | 2.29e-12 | 108 |
nongranular leukocyte | 3.44e-10 | 115 |
macrophage dendritic cell progenitor | 1.07e-09 | 61 |
defensive cell | 1.37e-09 | 48 |
phagocyte | 1.37e-09 | 48 |
hematopoietic lineage restricted progenitor cell | 2.34e-09 | 120 |
classical monocyte | 2.90e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.90e-09 | 42 |
monopoietic cell | 3.75e-09 | 59 |
monocyte | 3.75e-09 | 59 |
monoblast | 3.75e-09 | 59 |
promonocyte | 3.75e-09 | 59 |
leukocyte | 1.78e-08 | 136 |
embryonic stem cell | 2.71e-08 | 5 |
granulocyte monocyte progenitor cell | 2.95e-08 | 67 |
myeloid lineage restricted progenitor cell | 1.52e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.71e-12 | 9 |
upper respiratory tract | 1.82e-07 | 19 |
bone marrow | 2.91e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.58e-14 | 235 |
disease of cellular proliferation | 3.05e-13 | 239 |
hematologic cancer | 4.10e-13 | 51 |
immune system cancer | 4.10e-13 | 51 |
leukemia | 2.12e-11 | 39 |
organ system cancer | 1.03e-08 | 137 |
carcinoma | 1.96e-08 | 106 |
myeloid leukemia | 6.58e-08 | 31 |