FFCP PHASE1:Hg19::chr2:131594505..131594522,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50649 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=684 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=16bp_to_ENST00000526381_5end | |||
|coexpression_cluster_id=C4126 | |||
|description=CAGE_peak_5_at_ARHGEF4_5end | |||
|id=chr2:131594505..131594522,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.32e-11!254;CL:0002076!3.14e-09!43;CL:0002251!2.59e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002251;9.63e-11;20!CL:0000622;4.68e-09;5!CL:0002623;7.90e-09;3!CL:0000154;1.56e-07;6!CL:0002076;5.05e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,1.22e-10,20;CL:0000622,3.17e-09,5;CL:0002623,5.49e-09,3;CL:0002076,2.43e-08,42;CL:0000154,1.13e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.88e-12;82!UBERON:0006241;1.06e-09;3!UBERON:0003057;1.06e-09;3 | |||
|ontology_enrichment_disease=DOID:305!2.59e-09!106;DOID:1749!1.27e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.46e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.71e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.69e-38!57;UBERON:0005068!1.69e-38!57;UBERON:0006241!1.69e-38!57;UBERON:0007135!1.69e-38!57;UBERON:0001017!2.03e-33!82;UBERON:0000153!1.95e-32!129;UBERON:0007811!1.95e-32!129;UBERON:0000033!2.93e-32!123;UBERON:0005743!8.87e-32!86;UBERON:0000955!3.28e-31!69;UBERON:0006238!3.28e-31!69;UBERON:0002616!1.35e-30!59;UBERON:0000073!1.79e-29!94;UBERON:0001016!1.79e-29!94;UBERON:0002780!3.60e-29!41;UBERON:0001890!3.60e-29!41;UBERON:0006240!3.60e-29!41;UBERON:0004121!1.02e-28!169;UBERON:0000924!3.83e-28!173;UBERON:0006601!3.83e-28!173;UBERON:0003080!3.91e-28!42;UBERON:0001893!7.67e-26!34;UBERON:0002020!9.84e-26!34;UBERON:0003528!9.84e-26!34;UBERON:0003075!1.69e-25!86;UBERON:0007284!1.69e-25!86;UBERON:0002791!6.47e-25!33;UBERON:0002346!1.93e-24!90;UBERON:0001869!9.10e-24!32;UBERON:0007023!2.16e-23!115;UBERON:0003056!1.21e-20!61;UBERON:0000956!1.47e-17!25;UBERON:0000203!1.47e-17!25;UBERON:0002619!1.21e-15!22;UBERON:0001950!1.04e-13!20;UBERON:0000064!2.34e-12!219;UBERON:0000477!1.94e-11!286;UBERON:0000062!2.68e-11!511;UBERON:0003076!2.68e-11!15;UBERON:0003057!2.68e-11!15;UBERON:0000922!1.71e-10!612;UBERON:0000475!5.36e-10!365;UBERON:0002308!8.48e-10!9;UBERON:0000125!8.48e-10!9;UBERON:0002420!9.32e-10!9;UBERON:0007245!9.32e-10!9;UBERON:0010009!9.32e-10!9;UBERON:0010011!9.32e-10!9;UBERON:0000454!9.32e-10!9;UBERON:0004111!1.61e-09!241;UBERON:0000481!2.15e-09!347;UBERON:0001004!3.42e-09!72;UBERON:0000161!7.60e-09!35;UBERON:0002050!1.57e-08!605;UBERON:0005423!1.57e-08!605;UBERON:0000166!2.14e-08!21;UBERON:0004119!3.05e-08!169;UBERON:0000925!3.05e-08!169;UBERON:0006595!3.05e-08!169;UBERON:0000923!3.49e-08!604;UBERON:0005291!3.49e-08!604;UBERON:0006598!3.49e-08!604;UBERON:0002532!3.49e-08!604;UBERON:0004733!3.82e-08!12;UBERON:0002028!3.82e-08!12;UBERON:0007277!3.82e-08!12;UBERON:0009663!6.22e-08!7;UBERON:0000468!7.60e-08!659;UBERON:0002298!1.84e-07!8;UBERON:0004732!2.78e-07!13;UBERON:0001007!3.47e-07!155;UBERON:0001555!3.47e-07!155;UBERON:0007026!3.47e-07!155;UBERON:0000200!3.55e-07!6;UBERON:0000467!3.74e-07!625;UBERON:0000480!4.53e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;3.99e-28;34!UBERON:0003528;6.67e-28;34!UBERON:0002020;6.67e-28;34!UBERON:0002791;1.31e-25;32!UBERON:0001869;1.85e-25;32!UBERON:0002780;3.59e-23;41!UBERON:0001890;3.59e-23;41!UBERON:0000073;1.65e-22;53!UBERON:0002616;1.65e-22;53!UBERON:0002619;2.64e-19;22!UBERON:0000956;3.69e-19;25!UBERON:0000203;3.69e-19;25!UBERON:0000125;9.21e-17;9!UBERON:0002308;9.21e-17;9!UBERON:0001017;2.64e-16;75!UBERON:0002298;4.69e-16;6!UBERON:0001950;1.62e-15;20!UBERON:0000955;1.29e-13;68!UBERON:0002420;2.66e-13;9!UBERON:0007245;2.66e-13;9!UBERON:0010009;2.66e-13;9!UBERON:0010011;2.66e-13;9!UBERON:0000454;2.66e-13;9!UBERON:0009663;1.07e-12;7!UBERON:0001016;2.55e-11;83!UBERON:0000200;8.71e-11;6!UBERON:0002240;1.06e-09;3!UBERON:0005174;1.06e-09;3!UBERON:0001137;1.06e-09;3!UBERON:0001896;1.25e-09;3!UBERON:0005290;1.25e-09;3!UBERON:0000161;2.83e-09;19!UBERON:0000166;2.83e-09;19!UBERON:0000349;9.72e-09;5!UBERON:0000988;3.72e-08;3!UBERON:0011216;7.30e-08;132!UBERON:0004733;1.28e-07;12!UBERON:0002028;1.28e-07;12!UBERON:0007023;2.31e-07;114!UBERON:0001044;3.06e-07;6!UBERON:0003293;3.06e-07;6!UBERON:0003294;3.06e-07;6!UBERON:0010047;3.06e-07;6!UBERON:0003408;3.06e-07;6!UBERON:0000167;3.06e-07;6!UBERON:0000165;3.41e-07;28!UBERON:0004732;5.68e-07;13!UBERON:0001897;7.21e-07;2!UBERON:0010225;7.21e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,8.84e-46,56;UBERON:0005068,8.84e-46,56;UBERON:0006241,8.84e-46,56;UBERON:0007135,8.84e-46,56;UBERON:0000073,2.73e-39,53;UBERON:0002616,2.73e-39,53;UBERON:0000955,3.16e-35,68;UBERON:0006238,3.16e-35,68;UBERON:0001017,8.90e-35,81;UBERON:0001893,9.13e-34,34;UBERON:0003528,1.42e-33,34;UBERON:0002020,1.42e-33,34;UBERON:0002780,7.66e-33,41;UBERON:0001890,7.66e-33,41;UBERON:0003080,7.66e-33,41;UBERON:0006240,7.66e-33,41;UBERON:0003075,2.71e-32,82;UBERON:0007284,2.71e-32,82;UBERON:0010371,1.61e-31,104;UBERON:0002346,2.47e-30,86;UBERON:0001016,2.47e-30,89;UBERON:0002791,1.13e-29,32;UBERON:0001869,1.60e-29,32;UBERON:0004121,5.43e-28,171;UBERON:0000924,5.43e-28,171;UBERON:0006601,5.43e-28,171;UBERON:0007023,5.36e-25,114;UBERON:0003056,9.63e-24,61;UBERON:0002619,1.44e-19,22;UBERON:0000956,1.82e-19,25;UBERON:0000203,1.82e-19,25;UBERON:0010314,6.21e-19,132;UBERON:0000125,5.84e-17,9;UBERON:0002308,5.84e-17,9;UBERON:0002298,2.89e-16,6;UBERON:0001950,1.04e-15,20;UBERON:0011216,1.56e-15,223;UBERON:0003076,9.78e-14,15;UBERON:0003057,9.78e-14,15;UBERON:0002420,2.94e-13,9;UBERON:0007245,2.94e-13,9;UBERON:0010009,2.94e-13,9;UBERON:0010011,2.94e-13,9;UBERON:0000454,2.94e-13,9;UBERON:0009663,1.20e-12,7;UBERON:0000200,8.09e-11,6;UBERON:0004111,1.40e-10,240;UBERON:0002240,1.07e-09,3;UBERON:0005174,1.07e-09,3;UBERON:0001137,1.07e-09,3;UBERON:0001896,1.41e-09,3;UBERON:0005290,1.41e-09,3;UBERON:0010096,1.41e-09,3;UBERON:0000166,1.60e-09,22;UBERON:0000349,8.58e-09,5;UBERON:0000988,2.09e-08,3;UBERON:0004733,1.02e-07,12;UBERON:0002028,1.02e-07,12;UBERON:0007277,1.02e-07,12;UBERON:0001044,2.83e-07,6;UBERON:0003293,2.83e-07,6;UBERON:0003294,2.83e-07,6;UBERON:0010047,2.83e-07,6;UBERON:0000167,2.83e-07,6;UBERON:0000025,3.95e-07,192;UBERON:0004732,4.63e-07,13;UBERON:0001897,7.25e-07,2;UBERON:0010225,7.25e-07,2;UBERON:0000165,9.54e-07,29;UBERON:0000930,9.54e-07,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.861847406537515,0,0.313454721478088,0.572471974262113,1.64249310087461,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0,0,0.130979075497713,2.5500670180478,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,1.09098448236334,0.573609190778008,0.731842236777572,0.662648841607426,0.580969714347592,0.621966330092223,1.51392510525377,0,0,0,0,0,0,0.473227200159376,0.505754070234305,0.241011029883482,0.441175890929576,0.653638332277218,0.71181185733329,0.269662616320329,0.588664395376038,0.769494313892781,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,1.09750285408626,1.1240175325762,0.502644862058154,0.740707561268237,0,0,0,0.811512834825538,0,0,0,0.190254152234598,0,0,0,0,0,0.93733833986777,0.335964256397719,0.425325291727159,0.53735113621709,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,3.40699659062816,0,0,0,0,0.15403067420883,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90036147621913,0,0.096670718292122,0,0,0,0,0,0,0,1.32227932288782,0.576570202095319,0.382838137483752,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,0,0,0,0.43050537267123,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,3.37606599385231,0.556543525114529,0,0,0.398495976502139,0,0.251932747854276,11.6586298052456,0,0,0.0898683511473268,0.179021174675609,0,0.0986434056369336,0,0,4.84666373047609,1.85536196323703,0,0,0,0,1.593108275997,0.762760950878299,0.709163045303809,0,0,0,6.20018970069687,1.08536794762867,0,0.995213339381022,0.886642856860642,0.658156191461918,0.435753854075961,1.39423744278603,0.461701551022782,0,0,0.0897576444097721,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,3.77446344691791,0,0.937057782901357,0,1.56531695145672,0,0,0,0.30607276163049,0,0.150323419414493,0.207376382794494,0,0,0,0,0,0,0,2.25382514053069,0,0.52418000472609,0,1.74161396320353,1.97341156132701,0.739039113478883,0.969890164884194,0,0,0,0,1.83601308272048,0.391102765469606,0,0,1.19885765749278,0,0.229073192331831,0,1.29649318189335,0,3.06402245001834,0.271808412147228,0,0.101998217636322,0,1.80126086612937,1.50595916781192,0,0,1.8402114799552,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,1.59045937961861,5.5843396505746,0.482259445395058,0.412618309791701,0,0,1.5476039091159,2.79447960626913,2.0126081255956,0,0,0.105600336519406,0.179287339332845,0.767660789277781,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,1.93924434542326,1.58679122091228,0,0,0,0,0,0,0,0.487170393523584,1.91502377331055,0,0,0,0,0,0.886068179966986,1.58634144372552,2.003054891304,5.16068276121064,4.10437490686353,6.08544748825558,0,0.74988244777264,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0.176689145945881,0,0.168942440653073,0,0.345430341731199,0.303859956177382,3.17994403148981,0,0,0,0,0,0.422624246717254,0,0,0,0,0,3.35710818526667,1.24415452006595,0,0,0.157265941855896,0,0,0,0.371807292777007,0,0,0.157723490002507,0,0,0,1.47727217721857,0,2.87340946302872,0.41023272848151,0,2.55881834117606,3.71393984953257,0,3.14072699203282,1.29766695682514,0.550285795565037,0.808679663052368,0,0.690359926060101,0.596748666348824,0,0,1.56302802246618,0,0,0.295712172434091,1.62090203084147,0.781078098613847,1.65349437200947,2.40980078736846,0.546974809018219,0.548257766857182,0.496211178389294,0,1.91643641459393,0.535701835878287,0.336283722218824,0,0.227662191351298,0,0.345701962667338,0,2.31097092121228,2.36781984826257,0.118193840883968,0.111231401892069,0.078493092850514,0.785577949580009,0.280272163313789,0,0,0,0.0714765441766563,0,0,0,0,1.65772931330429,4.60939888153665,3.45629830907046,1.29068207646083,0.118332000730565,0.255640214277473,0,0,0.31020638566432,0,0.111855431797792,0,0,0,0,0,0.971421986118279,0,0,0,0,0.549702583727146,0,0,0,0.470317296361523,0,0.235676547101626,5.30032861210352,5.34683520588755,7.1851473689178,0,0.0939839179798536,0.128915775947154,0.0999411559249289,3.03541695629618,0.352894871715692,0,0,0,2.58011249672612,0,2.37970215668201,0,0.5290268405154,0,0,0,0.252332849670158,0.764859003745869,0,0.509944148709909,0.534434810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| |||
|short_description=p5@ARHGEF4 | |||
}} |
Revision as of 05:25, 21 January 2014
Short description: | p5@ARHGEF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ARHGEF4_5end |
Coexpression cluster: | C4126_salivary_astrocytoma_spinal_hippocampus_medulla_thalamus_amygdala |
Association with transcript: | 16bp_to_ENST00000526381_5end |
EntrezGene: | ARHGEF4 |
HGNC: | 684 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 1.22e-10 | 20 |
acinar cell | 3.17e-09 | 5 |
acinar cell of salivary gland | 5.49e-09 | 3 |
endo-epithelial cell | 2.43e-08 | 42 |
protein secreting cell | 1.13e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.71e-08 | 14 |