FFCP PHASE1:Hg19::chr20:31350184..31350200,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1789 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2979 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UBC3,B4DSU1,E7EN63,B4DSM8,E9PBF2 | |||
|association_with_transcript=0bp_to_ENST00000328111,ENST00000537219,NM_001207055,NM_001207056,NM_006892,NM_175848,NM_175849,uc002wyc.2,uc002wyd.2,uc002wye.2,uc010gee.2,uc010gef.2,uc010ztx.1,uc010zty.1,uc010ztz.1,uc010zua.1_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_DNMT3B_5end | |||
|id=chr20:31350184..31350200,+ | |||
|ontology_enrichment_celltype=CL:0000066!9.14e-19!254;CL:0000012!3.34e-14!682;CL:0000548!6.06e-13!679;CL:0000004!6.06e-13!679;CL:0000255!6.06e-13!679;CL:1000497!3.19e-08!18;CL:0002518!3.19e-08!18;CL:0002321!4.80e-08!248;CL:1000449!1.66e-07!16;CL:0000220!1.79e-07!246;CL:0000003!3.18e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:1000497;1.36e-09;17!CL:0002518;1.36e-09;17!CL:1000449;8.25e-09;15!CL:1000507;3.33e-07;10!CL:1000494;3.33e-07;10!CL:0002681;3.87e-07;12!CL:0002584;3.87e-07;12!CL:0000039;8.95e-07;7!CL:0000586;8.95e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.29e-15,253;CL:1000497,1.47e-09,17;CL:0002518,1.47e-09,17;CL:1000449,9.23e-09,15;CL:1000507,3.66e-07,10;CL:1000494,3.66e-07,10;CL:0002681,4.16e-07,12;CL:0002584,4.16e-07,12;CL:0000039,9.70e-07,7;CL:0000586,9.70e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.57e-41!235;DOID:14566!1.32e-40!239;DOID:0050686!1.28e-25!137;DOID:0050687!1.50e-20!143;DOID:305!2.44e-18!106;DOID:1240!7.96e-14!39;DOID:2531!4.69e-13!51;DOID:0060083!4.69e-13!51;DOID:8692!7.09e-12!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.43e-11;31!DOID:1240;2.89e-11;39!DOID:2531;2.61e-09;51!DOID:0060083;2.61e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.05e-41,235;DOID:14566,5.66e-41,239;DOID:0050686,6.16e-26,137;DOID:0050687,5.71e-21,143;DOID:305,3.56e-19,106;DOID:1240,9.59e-14,39;DOID:2531,1.19e-12,51;DOID:0060083,1.19e-12,51;DOID:8692,5.60e-12,31 | |||
|ontology_enrichment_uberon=UBERON:0002113!7.45e-09!27;UBERON:0003918!7.45e-09!27;UBERON:0005095!7.45e-09!27;UBERON:0007687!7.45e-09!27;UBERON:0004211!1.66e-07!16;UBERON:0001285!1.66e-07!16;UBERON:0007684!1.66e-07!16;UBERON:0003220!1.66e-07!16;UBERON:0004208!1.66e-07!16;UBERON:0006554!2.83e-07!44;UBERON:0006555!6.13e-07!17;UBERON:0005103!6.13e-07!17;UBERON:0000083!6.13e-07!17;UBERON:0009201!6.13e-07!17;UBERON:0004819!6.13e-07!17;UBERON:0006553!6.13e-07!17;UBERON:0003074!6.13e-07!17;UBERON:0003060!6.13e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;1.28e-10;24!UBERON:0011143;1.28e-10;24!UBERON:0006555;8.25e-09;15!UBERON:0004819;8.25e-09;15!UBERON:0001285;8.25e-09;15!UBERON:0007684;8.25e-09;15!UBERON:0006554;2.94e-08;30!UBERON:0001008;2.94e-08;30!UBERON:0000489;5.26e-08;29!UBERON:0001851;2.09e-07;15!UBERON:0004211;3.33e-07;10!UBERON:0009773;3.33e-07;10!UBERON:0001231;3.33e-07;10!UBERON:0004810;3.33e-07;10!UBERON:0001225;3.87e-07;12!UBERON:0008987;3.87e-07;12!UBERON:0000353;9.66e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,6.06e-09,26;UBERON:0003918,6.06e-09,26;UBERON:0011143,6.06e-09,26;UBERON:0005095,6.06e-09,26;UBERON:0007687,6.06e-09,26;UBERON:0004211,9.23e-09,15;UBERON:0009773,9.23e-09,15;UBERON:0001231,9.23e-09,15;UBERON:0001285,9.23e-09,15;UBERON:0007684,9.23e-09,15;UBERON:0004208,9.23e-09,15;UBERON:0006555,9.10e-08,16;UBERON:0004819,9.10e-08,16;UBERON:0001851,1.92e-07,15;UBERON:0004810,3.66e-07,10;UBERON:0001225,4.16e-07,12;UBERON:0008987,4.16e-07,12;UBERON:0000489,8.47e-07,31;UBERON:0000353,8.72e-07,15 | |||
|phase1_expression=0,0.214100523890983,0,0,0.446961094427288,0,0,0,0,1.47440361900905,6.97801167972428,4.58726881473362,3.4289707169699,0.247532705920093,0.331397375727916,0.672325146451775,1.80808358407193,0,0.487932798790507,9.11095829768231,9.79203317972414,5.95563970808367,4.57977579409691,5.88560027813402,4.2684497462233,0.152826811495903,0,0.157421562627358,0,0,0.154816123316076,1.83884244895785,0.90361775633475,1.10926203050036,10.0707360754392,6.53978469442139,9.10161361938026,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0.619412741790207,0,0.512321413058201,0.47296445977717,0,1.29096936716765,1.35426486594342,0.752969358170419,0,0.224723484445085,0.918251677112708,0,0.639337125799041,0,0.797854630486527,0.426224750532694,0.290209238628584,0,0,0.75374599577023,0.521482918420201,0.434377689410233,0.605399502633369,1.10483290796269,0.632924774881769,0.211255286311942,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8954195721123,7.8471198817415,11.5888997301034,0,0,0,0,0,0,0,0.668462741311041,0.294605907474837,0.221533894583621,0,0.384273959177026,0.650296737799391,2.46656856905514,1.93445012450094,1.44901542867526,0,0.267540828089713,1.04535523804977,2.26618685395132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.895037932904712,1.80719576192283,0.50133791063589,0.434539556882471,1.5905718941022,0,2.07976597760949,1.33037638477538,1.66886092816939,1.76821751921912,0.364295288292542,3.33705998505986,0.324547393654683,0.174129737299267,0,0.238490624305342,0,0,0.79504962946682,1.72046919021225,1.38856200643038,0.56530794192401,0,1.92582629358047,2.08994966536811,0.516833518338658,1.42306505074684,0.33472061276467,1.61131726843659,0.760272105718513,1.46437234528902,0.735326160691737,0.81014194788176,4.64358587077215,6.06229306090659,5.18012810223282,4.5994991239765,2.84779697870439,1.83201743930407,0,0,2.61656431285521,0.496971951695318,1.64619665163954,0.926864265692532,3.15520282823695,2.4826786753885,1.12135520028461,1.06748995729705,0.74000264525148,1.24484414159907,0.808264032418128,3.59616186849609,2.11900398702904,1.15235184896,2.10889288650417,0.936480230490962,1.1409436430889,0.747243402759005,4.57994544710683,4.37056949793955,3.37081936085396,1.63323337003915,3.93069815397658,0.103325781175765,1.18800285728205,1.48360157567134,1.82032272387605,0.718618141816238,3.87173062094352,7.25687415257392,0.831192346452549,1.75591048352335,1.83892677479412,1.05166641234618,0.794025282120147,6.45802688479903,0.85422955527427,0.423863802319124,3.30100205692843,0.721367704669072,1.03056216018252,0.18611685633159,2.53164498361899,1.16924406193438,5.55354303337052,0.920498986422993,0,3.55009592516614,2.01504196455281,2.37384829234683,0.966304265816484,1.36373060295417,0,751.723950876696,740.311285843817,628.028261209747,410.705099970898,838.462187459713,724.115080406447,0,0,4.14404764057442,0,0,1.30137480043828,2.19160097101532,1.68707720918437,1.8749975364507,2.17879444092406,2.13543557199987,2.02246962240247,1.76599318612811,1.53898862778556,6.64339909162183,2.80483547606892,3.2925920906512,0,0,0,0.590789906681404,7.94633578946371,8.36321382093172,1.71567810298526,0.98775256867763,0,1.91005047582099,0.277765335475589,1.62904152655162,2.07986957055916,0,0.579652024875384,0.587043471179108,0.144366447761074,0.925971025153221,0.380508304469197,4.74122638775565,6.00940313466411,0.492434012174795,0,0.743155811443641,3.74935335947108,0.503946384596579,1.70130116690864,0.179117045405697,0.290633938513962,1.53353071666084,0,0.880484340132261,0.621984346622316,1.00883967391873,0.50496973370552,0.571481048629521,1.52795370223311,1.17217447210047,1.71072446022705,0.822619941626588,1.20137223137567,0.285826432630578,7.62491373548453,4.3596006883328,4.2536205776151,0.129271715757778,3.57656445851882,5.071816515336,2.39344304926383,5.2003718455683,2.05765899409714,0,1.3321108950805,0.285955987316295,0.542621605391443,1.64648067356154,3.58309802723109,0,0,0.602878754119172,0,0.399891964728228,0,0,0,0.958499421966331,0,8.5582143024431,0.289562613335158,1.43833425785268,1.43248770591916,12.329365839288,0.394061520403854,0.646882724578552,0,1.01637849688985,1.30139853857622,0.773288812777695,1.67516265334349,1.27587750330633,0,0,0,0,0.500170521059677,0,0.831883446123229,1.07057393278297,1.26161932027148,2.22568688486155,0.300946099727719,0,0,0.664225598535437,2.21243002250044,0.955719759148911,0.979005787313703,1.02943027143257,0,0,0.106727557803444,2.12189300012382,0,4.83824469327489,0,0.460385919864187,0,0,0,0.160853921143607,1.48418066444991,2.46735510084249,1.06537035187876,1.31403449622095,0,1.27831416305955,10.5147721144711,0.802025881213139,0.920809889358963,2.18147451512753,3.45973219212762,0.524497659837696,13.9871880001298,6.46928831677084,25.8835423828362,16.0753147118587,5.48868470242954,11.3733384070897,2.72149928442425,4.31831832204279,3.08454505380579,6.23176806350862,14.0473136679359,11.4694322870267,9.97291210714469,19.4771036608295,0.877039506583738,0.522870902049801,1.02580050046556,1.96808787419823,0.32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| |||
|short_description=p1@DNMT3B | |||
}} |
Revision as of 10:46, 21 January 2014
Short description: | p1@DNMT3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DNMT3B_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000328111, ENST00000537219, NM_001207055, NM_001207056, NM_006892, NM_175848, NM_175849, uc002wyc.2, uc002wyd.2, uc002wye.2, uc010gee.2, uc010gef.2, uc010ztx.1, uc010zty.1, uc010ztz.1, uc010zua.1_5end |
EntrezGene: | DNMT3B |
HGNC: | 2979 |
UniProt: | Q9UBC3B4DSU1E7EN63B4DSM8E9PBF2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.29e-15 | 253 |
kidney cell | 1.47e-09 | 17 |
kidney epithelial cell | 1.47e-09 | 17 |
epithelial cell of nephron | 9.23e-09 | 15 |
kidney tubule cell | 3.66e-07 | 10 |
nephron tubule epithelial cell | 3.66e-07 | 10 |
kidney cortical cell | 4.16e-07 | 12 |
renal cortical epithelial cell | 4.16e-07 | 12 |
germ line cell | 9.70e-07 | 7 |
germ cell | 9.70e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
kidney | 6.06e-09 | 26 |
kidney mesenchyme | 6.06e-09 | 26 |
upper urinary tract | 6.06e-09 | 26 |
kidney rudiment | 6.06e-09 | 26 |
kidney field | 6.06e-09 | 26 |
nephron epithelium | 9.23e-09 | 15 |
renal tubule | 9.23e-09 | 15 |
nephron tubule | 9.23e-09 | 15 |
nephron | 9.23e-09 | 15 |
uriniferous tubule | 9.23e-09 | 15 |
nephrogenic mesenchyme | 9.23e-09 | 15 |
excretory tube | 9.10e-08 | 16 |
kidney epithelium | 9.10e-08 | 16 |
cortex | 1.92e-07 | 15 |
nephron tubule epithelium | 3.66e-07 | 10 |
cortex of kidney | 4.16e-07 | 12 |
renal parenchyma | 4.16e-07 | 12 |
cavitated compound organ | 8.47e-07 | 31 |
parenchyma | 8.72e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.05e-41 | 235 |
disease of cellular proliferation | 5.66e-41 | 239 |
organ system cancer | 6.16e-26 | 137 |
cell type cancer | 5.71e-21 | 143 |
carcinoma | 3.56e-19 | 106 |
leukemia | 9.59e-14 | 39 |
hematologic cancer | 1.19e-12 | 51 |
immune system cancer | 1.19e-12 | 51 |
myeloid leukemia | 5.60e-12 | 31 |