FFCP PHASE1:Hg19::chr4:40751927..40751995,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79730 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25857 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000316607,ENST00000473399_5end | |||
|coexpression_cluster_id=C4412 | |||
|description=CAGE_peak_1_at_NSUN7_5end | |||
|id=chr4:40751927..40751995,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.10e-11!254 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.59e-08;15!CL:1000497;2.23e-08;17!CL:0002518;2.23e-08;17!CL:1000507;4.96e-08;10!CL:1000494;4.96e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.91e-13,253;CL:1000449,2.06e-08,15;CL:1000497,2.94e-08,17;CL:0002518,2.94e-08,17;CL:1000507,5.95e-08,10;CL:1000494,5.95e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.48e-07;10!UBERON:0005564;7.48e-07;10 | |||
|ontology_enrichment_disease=DOID:305!4.82e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.94e-11,106;DOID:0050687,2.70e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0000464!1.87e-10!104;UBERON:0000064!1.65e-09!219;UBERON:0000466!5.35e-09!126;UBERON:0007023!1.83e-08!115;UBERON:0000062!4.52e-08!511;UBERON:0000080!9.55e-08!18;UBERON:0002120!9.55e-08!18;UBERON:0004875!9.55e-08!18;UBERON:0005721!9.55e-08!18;UBERON:0005754!9.55e-08!18;UBERON:0007297!9.55e-08!18;UBERON:0004119!2.77e-07!169;UBERON:0000925!2.77e-07!169;UBERON:0006595!2.77e-07!169;UBERON:0006555!3.17e-07!17;UBERON:0005103!3.17e-07!17;UBERON:0000083!3.17e-07!17;UBERON:0009201!3.17e-07!17;UBERON:0004819!3.17e-07!17;UBERON:0006553!3.17e-07!17;UBERON:0003074!3.17e-07!17;UBERON:0003060!3.17e-07!17;UBERON:0000058!4.04e-07!26;UBERON:0004876!4.09e-07!20;UBERON:0003887!4.99e-07!21;UBERON:0000922!6.63e-07!612;UBERON:0000468!6.87e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.59e-08;15!UBERON:0004819;1.59e-08;15!UBERON:0001285;1.59e-08;15!UBERON:0007684;1.59e-08;15!UBERON:0004211;4.96e-08;10!UBERON:0009773;4.96e-08;10!UBERON:0001231;4.96e-08;10!UBERON:0004810;4.96e-08;10!UBERON:0004921;7.63e-08;33!UBERON:0000970;1.97e-07;20!UBERON:0003135;2.15e-07;11!UBERON:0005409;3.15e-07;22!UBERON:0006554;4.15e-07;30!UBERON:0001008;4.15e-07;30!UBERON:0000489;4.68e-07;29!UBERON:0000019;4.75e-07;19!UBERON:0000047;4.75e-07;19!UBERON:0004088;4.75e-07;19!UBERON:0010230;4.75e-07;19!UBERON:0001456;5.00e-07;21!UBERON:0000160;7.23e-07;17!UBERON:0002104;8.19e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006555,3.70e-09,16;UBERON:0004819,3.70e-09,16;UBERON:0004119,5.82e-09,160;UBERON:0000925,5.82e-09,160;UBERON:0006595,5.82e-09,160;UBERON:0005177,9.80e-09,101;UBERON:0004211,2.06e-08,15;UBERON:0009773,2.06e-08,15;UBERON:0001231,2.06e-08,15;UBERON:0001285,2.06e-08,15;UBERON:0007684,2.06e-08,15;UBERON:0004208,2.06e-08,15;UBERON:0000489,4.17e-08,31;UBERON:0004810,5.95e-08,10;UBERON:0001007,6.37e-08,145;UBERON:0001555,6.37e-08,145;UBERON:0007026,6.37e-08,145;UBERON:0006554,7.06e-08,47;UBERON:0001048,9.86e-08,160;UBERON:0004921,9.92e-08,118;UBERON:0001008,1.65e-07,48;UBERON:0003135,2.11e-07,11;UBERON:0002113,2.33e-07,26;UBERON:0003918,2.33e-07,26;UBERON:0011143,2.33e-07,26;UBERON:0005095,2.33e-07,26;UBERON:0007687,2.33e-07,26;UBERON:0007023,4.04e-07,114;UBERON:0005178,4.74e-07,34;UBERON:0002224,4.74e-07,34;UBERON:0000970,5.27e-07,21;UBERON:0002104,5.27e-07,21;UBERON:0000160,5.74e-07,17 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,0,0,0,0,0,0,3.93174298402414,9.07141518364156,2.40285509343189,2.37390280405608,0,0.331397375727916,0,0,0,0.975865597581014,5.41732655537867,3.26401105990805,2.19418305034661,6.86966369114536,6.98059567871709,6.90484517771415,0,0,0,0,0,0.464448369948228,1.83884244895785,0,1.84877005083394,0,0,2.64240395401362,0.553995408531877,0.802177789880567,0.217010870715852,0.671746422719773,0.971680998056939,1.03030227053675,0.290796477559129,0.755751887377619,0.242584061187816,0.464858073811369,0,0,0.28769239232215,0.768482119587302,1.18241114944293,0.344745680736619,0,0,0,0.545812300115692,0,0.306083892370903,0.641858054152187,0.639337125799041,1.64925650093358,0.797854630486527,0.852449501065388,0.290209238628584,0,0.622822248995575,1.7587406567972,2.08593167368081,0,0.605399502633369,1.10483290796269,0.949387162322653,0,0,0.628975936525128,0,0.750884464207532,0.803627933485401,0,0,0.182664153764634,1.75996244461323,0,0.889509253863555,0.853460445133014,1.20118796110804,0.574752439954483,1.32208974556972,0.954053754535364,7.96898156753228,4.69789751496751,8.02773779062981,3.96513985737078,1.68152568894461,0.263384084775077,0.196709770113833,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.289648807765598,0,0.670700859703636,0.12786256184353,0,0,0.289693037921647,0,0,5.76662384700814,3.54767035940102,4.12823492757692,8.2516817563559,5.82872461268068,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,3.20189636418039,0.33472061276467,0,0,0.24406205754817,0,0,0.714397826272638,1.12264686313085,1.23872628531654,0,0,0,2.63560834872127,7.75560528296651,3.05265836499774,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0.151357427644931,0,2.34321431833797,0,0,0.149448680551801,1.17434498643765,1.29498355494505,0.280901613404497,0.204154171254893,0.491337269247072,0.309977343527296,1.18800285728205,1.7308685049499,0,0,1.5150250255866,0.750711119231785,0,1.75591048352335,0.30648779579902,1.50238058906597,0,0.179389635688862,0.640672166455702,0.211931901159562,0.300091096084402,0.103052529238439,0.772921620136887,0.37223371266318,0,0,0,0.644349290496095,0.323292113637624,0.355009592516614,0.302256294682921,0.67824236924195,0.193260853163297,0.545492241181669,0.860413786167011,11.9534232007003,8.61443494089654,9.41170937243099,8.91485073132186,8.07426722802011,10.2193660541232,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,5.16708818237254,0,1.6462960453256,0,1.26755034821831,0,1.18157981336281,0,6.27241036569879,2.74508496477641,0.548751427043128,0,0.703702806881416,2.31471112896324,3.25808305310325,0,2.88662684050547,4.9850074139283,1.76113041353732,0.144366447761074,0,0,3.95102198979638,6.86788929675898,0.984868024349589,0,0.594524649154913,0,1.6798212819886,1.13420077793909,0,0.290633938513962,0,0,0,0.207328115540772,0.432359860250884,0.50496973370552,0,0,0,0,0.102827492703324,0.300343057843917,0.571652865261156,0.336393253036082,1.30788020649984,0,0,0,0,0,0,1.02882949704857,0,0.799266537048298,0,0,1.64648067356154,0.325736184293735,0,0.791951872933429,0.602878754119172,0,1.3996218765488,0,0.502257091432126,0,0.479249710983165,3.44585807502342,0,0,0,0,0,0,0,0,1.27047312111232,5.20559415430487,0,2.68026024534958,0.637938751653163,7.49007023947182,2.99161459204025,10.7748033493369,0.12269149171914,0,0.271265023699736,0.207970861530807,0.356857977594324,0.157702415033935,0,1.20378439891088,2.27407504055985,0,0,1.10621501125022,0.347534457872331,0.587403472388222,0.343143423810856,0,0.431428401637234,0.320182673410333,0.606255142892519,3.32870879020994,3.62868351995616,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0,0,0,0,4.71351853407327,0.200506470303285,2.5782676902051,0,0,0,6.76799419361118,4.54390488916047,15.6869953835371,10.2297457257282,5.80533958910816,2.27466768141793,2.2112181685947,2.59099099322567,0,6.23176806350862,6.02027728625824,6.37190682612596,7.47968408035852,6.26849313222099,0,0,5.89835287767695,4.59220503979588,7.48370307727897,2.57602529119306,0.366277859273374,0.247528499761764,0.574265537996172,1.30012049207304,0,1.06337790121334,0.308097234229289,0.15350367472613,0.275673144969061,0.751941714077915,0.725083469571143,0.426133137080504,0,1.98341898433174,0.960950336825531,1.02090169995667,3.6416801107998,0,0,0,0,0,0,0,0,0.372158369359667,0,0.38126038784765,0,0.855877976067841,0,0,0.719489830333259,0.54907405947211,0.353437207037059,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0.286822704408103,0.196498082026242,0,0.709522128141196,0,0,0.75894634753143,2.79947776195986,1.63577591633371,1.34060455107157,7.62236894029258,2.54188262097304,1.29151611801369,3.36942951335251,0.886860307073351,1.1486170010348,1.01489521846434,3.0585488285695,1.13929437434833,1.42939065274673,1.64544909234478,1.29694662238543,2.70015718619057,4.75875105776562,0.854592569019785,0,10.2916890712033,0,0.432807638929335,1.35169502361987,0,0,0.383010740264733,0,2.59697552219644,0,0,0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| |||
|short_description=p1@NSUN7 | |||
}} |
Revision as of 00:49, 22 January 2014
Short description: | p1@NSUN7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NSUN7_5end |
Coexpression cluster: | C4412_argyrophil_rectum_testis_testicular_iPS_choriocarcinoma_small |
Association with transcript: | 0bp_to_ENST00000316607, ENST00000473399_5end |
EntrezGene: | NSUN7 |
HGNC: | 25857 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.91e-13 | 253 |
epithelial cell of nephron | 2.06e-08 | 15 |
kidney cell | 2.94e-08 | 17 |
kidney epithelial cell | 2.94e-08 | 17 |
kidney tubule cell | 5.95e-08 | 10 |
nephron tubule epithelial cell | 5.95e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
excretory tube | 3.70e-09 | 16 |
kidney epithelium | 3.70e-09 | 16 |
endoderm-derived structure | 5.82e-09 | 160 |
endoderm | 5.82e-09 | 160 |
presumptive endoderm | 5.82e-09 | 160 |
trunk region element | 9.80e-09 | 101 |
nephron epithelium | 2.06e-08 | 15 |
renal tubule | 2.06e-08 | 15 |
nephron tubule | 2.06e-08 | 15 |
nephron | 2.06e-08 | 15 |
uriniferous tubule | 2.06e-08 | 15 |
nephrogenic mesenchyme | 2.06e-08 | 15 |
cavitated compound organ | 4.17e-08 | 31 |
nephron tubule epithelium | 5.95e-08 | 10 |
digestive system | 6.37e-08 | 145 |
digestive tract | 6.37e-08 | 145 |
primitive gut | 6.37e-08 | 145 |
urinary system structure | 7.06e-08 | 47 |
primordium | 9.86e-08 | 160 |
subdivision of digestive tract | 9.92e-08 | 118 |
renal system | 1.65e-07 | 48 |
male reproductive organ | 2.11e-07 | 11 |
kidney | 2.33e-07 | 26 |
kidney mesenchyme | 2.33e-07 | 26 |
upper urinary tract | 2.33e-07 | 26 |
kidney rudiment | 2.33e-07 | 26 |
kidney field | 2.33e-07 | 26 |
adult organism | 4.04e-07 | 114 |
thoracic cavity element | 4.74e-07 | 34 |
thoracic cavity | 4.74e-07 | 34 |
eye | 5.27e-07 | 21 |
visual system | 5.27e-07 | 21 |
intestine | 5.74e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.94e-11 | 106 |
cell type cancer | 2.70e-09 | 143 |