FFCP PHASE1:Mm9::chr10:115614758..115614819,+: Difference between revisions
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{{FFCP|EntrezGene=19279|HGNC=|MCL_coexpression_id=12|UniProt=Q62132|association_with_transcript=291bp_to_ENSMUST00000128399_5end|description=CAGE_peak_3_at_Ptprr_5end|id=chr10:115614758..115614819,+|ontology_enrichment_celltype=CL:0002563!1.52e-09!9;CL:0002251!1.52e-09!9;CL:0000239!1.41e-07!6;CL:0000677!1.41e-07!6;CL:0000212!1.41e-07!6;CL:0000584!1.41e-07!6|ontology_enrichment_celltype_v019_2=CL:0000239,5.01e-15,6;CL:0000677,5.01e-15,6;CL:0000584,5.01e-15,6;CL:0000075,8.99e-13,7;CL:0002563,9.44e-13,9;CL:0002251,9.44e-13,9;CL:0000682,1.02e-08,3;CL:0000066,2.69e-08,25;CL:0002076,3.17e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!3.84e-20!59;UBERON:0000160!1.56e-19!43;UBERON:0000344!6.40e-16!15;UBERON:0001242!6.33e-14!13;UBERON:0000060!6.33e-14!13;UBERON:0001262!6.33e-14!13;UBERON:0004786!6.33e-14!13;UBERON:0004923!1.00e-11!24;UBERON:0003350!1.52e-09!9;UBERON:0004808!1.52e-09!9;UBERON:0001277!1.52e-09!9;UBERON:0004119!1.30e-07!130;UBERON:0000925!1.30e-07!130;UBERON:0006595!1.30e-07!130;UBERON:0000485!2.63e-07!11;UBERON:0001007!6.80e-07!128;UBERON:0001555!6.80e-07!128;UBERON:0007026!6.80e-07!128|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.59e-41,31;UBERON:0005409,5.74e-35,47;UBERON:0000344,2.00e-26,15;UBERON:0001242,4.73e-22,13;UBERON:0001262,4.73e-22,13;UBERON:0004786,4.73e-22,13;UBERON:0004923,1.00e-17,24;UBERON:0001007,9.45e-14,116;UBERON:0001555,9.45e-14,116;UBERON:0007026,9.45e-14,116;UBERON:0004119,2.11e-13,118;UBERON:0000925,2.11e-13,118;UBERON:0006595,2.11e-13,118;UBERON:0003350,9.44e-13,9;UBERON:0004808,9.44e-13,9;UBERON:0001277,9.44e-13,9;UBERON:0004921,1.01e-11,114;UBERON:0002108,8.26e-11,4;UBERON:0000485,3.08e-10,11;UBERON:0000331,8.57e-09,3;UBERON:0002116,8.57e-09,3;UBERON:0001204,8.57e-09,3;UBERON:0001168,8.57e-09,3|phase1_expression=0,41.1790981014446,37.309937629942,7.56160528267075,14.0250804384977,16.1164101035414,15.8856595604957,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.1992801653736,20.188016733911,31.5827580263261,28.861053742658,24.3482492935055,36.2944731161674,28.2273745331122,26.8293917892919,0,0,0,0.288851619751275,0.498703936075477,1.22501613757421,0,0,0.523523743973798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40444420131752,0.170430322578058,0,0,0,0,0,0,0,0,0,5.25245846707676,0.258937883647172,0,0,0,0,0,0.117588707135705,0,1.48316980640624,0,0,0.161766849947409,0,0,7.45567044872489,0,0.209446706813455,32.6985030666997,0,0,0.127070227073065,0,0,0.125654352112864,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,73.0225510394194,10.8424732332053,0.213288250535234,0.232236671860439,0,0.403367049246685,0.667134131534611,1.71203063501303,21.353807769503,4.11747386810027,1.25667604400135,4.97391180102877,3.31438948102504,26.0657628509724,19.0201483889731,23.8969527905241,0,0.114248512609729,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,1.03371317267288,0,0.356497378384721,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0.469343416127421,0.21183207086382,0,0,0,0,0.119372344003136,0,8.45294426226567,0,0,0,0,0,0,0,0.339956859987711,0.69975726161829,0.690999869022119,0.954670618015114,0,0,0.108005340821801,0.209088296014469,0.87345025498471,3.9110660451598,2.47960367176008,3.66458318777641,12.0541925161367,0,0,0,0,0.194451188344048,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0.0762068066549998,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,4.44336066274038,0.375364950902364,0.183151624267265,0,0,0,0.460325236507177,0.572895513439397,0,0,0.755393897389701,0,0,0,0,0.103787347584177,0,0.170733605754134,0.243106717068294,0.209613162627982,0,0.222246727801615,0.206035057238894,0,0.252697211763798,0,0,0,0,0.114870937911227,0,0.115884325944855,0,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0,0,0,0.429742108096597,0,0,0|short_description=p3@Ptprr}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:19279 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q62132 | |||
|association_with_transcript=291bp_to_ENSMUST00000128399_5end | |||
|cluster_id=chr10:115614758..115614819,+ | |||
|description=CAGE_peak_3_at_Ptprr_5end | |||
|id=chr10:115614758..115614819,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.52e-09!9;CL:0002251!1.52e-09!9;CL:0000239!1.41e-07!6;CL:0000677!1.41e-07!6;CL:0000212!1.41e-07!6;CL:0000584!1.41e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,5.01e-15,6;CL:0000677,5.01e-15,6;CL:0000584,5.01e-15,6;CL:0000075,8.99e-13,7;CL:0002563,9.44e-13,9;CL:0002251,9.44e-13,9;CL:0000682,1.02e-08,3;CL:0000066,2.69e-08,25;CL:0002076,3.17e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!3.84e-20!59;UBERON:0000160!1.56e-19!43;UBERON:0000344!6.40e-16!15;UBERON:0001242!6.33e-14!13;UBERON:0000060!6.33e-14!13;UBERON:0001262!6.33e-14!13;UBERON:0004786!6.33e-14!13;UBERON:0004923!1.00e-11!24;UBERON:0003350!1.52e-09!9;UBERON:0004808!1.52e-09!9;UBERON:0001277!1.52e-09!9;UBERON:0004119!1.30e-07!130;UBERON:0000925!1.30e-07!130;UBERON:0006595!1.30e-07!130;UBERON:0000485!2.63e-07!11;UBERON:0001007!6.80e-07!128;UBERON:0001555!6.80e-07!128;UBERON:0007026!6.80e-07!128 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.59e-41,31;UBERON:0005409,5.74e-35,47;UBERON:0000344,2.00e-26,15;UBERON:0001242,4.73e-22,13;UBERON:0001262,4.73e-22,13;UBERON:0004786,4.73e-22,13;UBERON:0004923,1.00e-17,24;UBERON:0001007,9.45e-14,116;UBERON:0001555,9.45e-14,116;UBERON:0007026,9.45e-14,116;UBERON:0004119,2.11e-13,118;UBERON:0000925,2.11e-13,118;UBERON:0006595,2.11e-13,118;UBERON:0003350,9.44e-13,9;UBERON:0004808,9.44e-13,9;UBERON:0001277,9.44e-13,9;UBERON:0004921,1.01e-11,114;UBERON:0002108,8.26e-11,4;UBERON:0000485,3.08e-10,11;UBERON:0000331,8.57e-09,3;UBERON:0002116,8.57e-09,3;UBERON:0001204,8.57e-09,3;UBERON:0001168,8.57e-09,3 | |||
|phase1_expression=0,41.1790981014446,37.309937629942,7.56160528267075,14.0250804384977,16.1164101035414,15.8856595604957,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.1992801653736,20.188016733911,31.5827580263261,28.861053742658,24.3482492935055,36.2944731161674,28.2273745331122,26.8293917892919,0,0,0,0.288851619751275,0.498703936075477,1.22501613757421,0,0,0.523523743973798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40444420131752,0.170430322578058,0,0,0,0,0,0,0,0,0,5.25245846707676,0.258937883647172,0,0,0,0,0,0.117588707135705,0,1.48316980640624,0,0,0.161766849947409,0,0,7.45567044872489,0,0.209446706813455,32.6985030666997,0,0,0.127070227073065,0,0,0.125654352112864,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,73.0225510394194,10.8424732332053,0.213288250535234,0.232236671860439,0,0.403367049246685,0.667134131534611,1.71203063501303,21.353807769503,4.11747386810027,1.25667604400135,4.97391180102877,3.31438948102504,26.0657628509724,19.0201483889731,23.8969527905241,0,0.114248512609729,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,1.03371317267288,0,0.356497378384721,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0.469343416127421,0.21183207086382,0,0,0,0,0.119372344003136,0,8.45294426226567,0,0,0,0,0,0,0,0.339956859987711,0.69975726161829,0.690999869022119,0.954670618015114,0,0,0.108005340821801,0.209088296014469,0.87345025498471,3.9110660451598,2.47960367176008,3.66458318777641,12.0541925161367,0,0,0,0,0.194451188344048,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0.0762068066549998,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,4.44336066274038,0.375364950902364,0.183151624267265,0,0,0,0.460325236507177,0.572895513439397,0,0,0.755393897389701,0,0,0,0,0.103787347584177,0,0.170733605754134,0.243106717068294,0.209613162627982,0,0.222246727801615,0.206035057238894,0,0.252697211763798,0,0,0,0,0.114870937911227,0,0.115884325944855,0,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0,0,0,0.429742108096597,0,0,0 | |||
|short_description=p3@Ptprr | |||
}} |
Revision as of 21:48, 3 August 2015
Short description: | p3@Ptprr |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ptprr_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 291bp_to_ENSMUST00000128399_5end |
EntrezGene: | 19279 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 5.01e-15 | 6 |
gut absorptive cell | 5.01e-15 | 6 |
enterocyte | 5.01e-15 | 6 |
columnar/cuboidal epithelial cell | 8.99e-13 | 7 |
intestinal epithelial cell | 9.44e-13 | 9 |
epithelial cell of alimentary canal | 9.44e-13 | 9 |
M cell of gut | 1.02e-08 | 3 |
epithelial cell | 2.69e-08 | 25 |
endo-epithelial cell | 3.17e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
intestine | 5.59e-41 | 31 |
gastrointestinal system | 5.74e-35 | 47 |
mucosa | 2.00e-26 | 15 |
intestinal mucosa | 4.73e-22 | 13 |
wall of intestine | 4.73e-22 | 13 |
gastrointestinal system mucosa | 4.73e-22 | 13 |
organ component layer | 1.00e-17 | 24 |
digestive system | 9.45e-14 | 116 |
digestive tract | 9.45e-14 | 116 |
primitive gut | 9.45e-14 | 116 |
endoderm-derived structure | 2.11e-13 | 118 |
endoderm | 2.11e-13 | 118 |
presumptive endoderm | 2.11e-13 | 118 |
epithelium of mucosa | 9.44e-13 | 9 |
gastrointestinal system epithelium | 9.44e-13 | 9 |
intestinal epithelium | 9.44e-13 | 9 |
subdivision of digestive tract | 1.01e-11 | 114 |
small intestine | 8.26e-11 | 4 |
simple columnar epithelium | 3.08e-10 | 11 |
ileal mucosa | 8.57e-09 | 3 |
ileum | 8.57e-09 | 3 |
mucosa of small intestine | 8.57e-09 | 3 |
wall of small intestine | 8.57e-09 | 3 |