FFCP PHASE1:Mm9::chr6:54516440..54516447,-: Difference between revisions
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{{FFCP|EntrezGene=69938|HGNC=|UniProt=Q9CZC8|association_with_transcript=35bp_to_ENSMUST00000019268_5end|description=CAGE_peak_4_at_Scrn1_5end|id=chr6:54516440..54516447,-|ontology_enrichment_celltype=CL:0000221!1.23e-16!44;CL:0000133!1.23e-16!44;CL:0000055!6.61e-16!50;CL:0002319!6.66e-16!43;CL:0000117!2.21e-15!23;CL:0000337!2.21e-15!23;CL:0000393!3.54e-13!39;CL:0000211!3.54e-13!39;CL:0000540!1.37e-12!33;CL:0000047!1.37e-12!33;CL:0000031!1.37e-12!33;CL:0000404!1.37e-12!33;CL:0002321!7.08e-08!70;CL:0000220!7.08e-08!70|ontology_enrichment_celltype_v019_2=CL:0000117,3.98e-25,23;CL:0000337,3.98e-25,23;CL:0000221,5.49e-23,44;CL:0000133,5.49e-23,44;CL:0000393,2.49e-21,39;CL:0000211,2.49e-21,39;CL:0002319,2.69e-21,43;CL:0000540,1.60e-18,33;CL:0000047,1.60e-18,33;CL:0000031,1.60e-18,33;CL:0000404,1.60e-18,33;CL:0002321,6.56e-17,70;CL:0002609,1.79e-15,6;CL:0000723,2.11e-09,91;CL:0000048,2.11e-09,91;CL:0002608,9.79e-09,3;CL:0002613,1.39e-08,3;CL:0000034,1.68e-08,97;CL:0002494,1.38e-07,3;CL:0000737,1.38e-07,3;CL:0000746,1.38e-07,3;CL:0000513,1.38e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.27e-27!102;UBERON:0000924!1.27e-27!102;UBERON:0006601!1.27e-27!102;UBERON:0000073!2.41e-27!75;UBERON:0001016!2.41e-27!75;UBERON:0001017!1.99e-26!73;UBERON:0005743!1.99e-26!73;UBERON:0002346!1.18e-23!71;UBERON:0003075!1.18e-23!71;UBERON:0007284!1.18e-23!71;UBERON:0000033!1.71e-23!63;UBERON:0001049!4.88e-23!52;UBERON:0005068!4.88e-23!52;UBERON:0006241!4.88e-23!52;UBERON:0007135!4.88e-23!52;UBERON:0000955!6.85e-21!50;UBERON:0006238!6.85e-21!50;UBERON:0002616!3.83e-20!49;UBERON:0003056!3.00e-19!49;UBERON:0002020!3.46e-18!34;UBERON:0003080!7.85e-17!40;UBERON:0002780!3.10e-16!39;UBERON:0001890!3.10e-16!39;UBERON:0006240!3.10e-16!39;UBERON:0002791!2.21e-15!29;UBERON:0003528!2.21e-15!29;UBERON:0001893!2.21e-15!29;UBERON:0007811!1.60e-11!86;UBERON:0000153!7.12e-10!94;UBERON:0000956!1.17e-09!21;UBERON:0001869!1.17e-09!21;UBERON:0000203!1.17e-09!21;UBERON:0002420!2.83e-07!8;UBERON:0007245!2.83e-07!8;UBERON:0010009!2.83e-07!8;UBERON:0010011!2.83e-07!8;UBERON:0000454!2.83e-07!8;UBERON:0002619!5.36e-07!17;UBERON:0003076!7.16e-07!12;UBERON:0003057!7.16e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.34e-23,73;UBERON:0001016,2.66e-22,75;UBERON:0004121,2.76e-19,95;UBERON:0000924,2.76e-19,95;UBERON:0006601,2.76e-19,95;UBERON:0000073,2.97e-18,54;UBERON:0000955,1.41e-17,47;UBERON:0006238,1.41e-17,47;UBERON:0001049,4.39e-17,52;UBERON:0005068,4.39e-17,52;UBERON:0006241,4.39e-17,52;UBERON:0007135,4.39e-17,52;UBERON:0003528,6.59e-17,29;UBERON:0002791,6.59e-17,29;UBERON:0001893,6.59e-17,29;UBERON:0002616,3.79e-16,46;UBERON:0002020,6.85e-16,34;UBERON:0002780,2.49e-15,39;UBERON:0001890,2.49e-15,39;UBERON:0006240,2.49e-15,39;UBERON:0003080,7.60e-15,40;UBERON:0010371,8.05e-15,73;UBERON:0002346,1.75e-14,64;UBERON:0003075,1.75e-14,64;UBERON:0007284,1.75e-14,64;UBERON:0010314,3.26e-14,92;UBERON:0003056,5.46e-13,49;UBERON:0002420,1.18e-11,8;UBERON:0007245,1.18e-11,8;UBERON:0010009,1.18e-11,8;UBERON:0010011,1.18e-11,8;UBERON:0000454,1.18e-11,8;UBERON:0000369,7.44e-09,5;UBERON:0002435,7.44e-09,5;UBERON:0000204,7.44e-09,5;UBERON:0010082,7.44e-09,5;UBERON:0001954,9.10e-09,7;UBERON:0003022,9.10e-09,7;UBERON:0002421,9.10e-09,7;UBERON:0000349,9.10e-09,7;UBERON:0002600,9.10e-09,7;UBERON:0004111,2.82e-08,122;UBERON:0000956,3.05e-08,21;UBERON:0001869,3.05e-08,21;UBERON:0000203,3.05e-08,21;UBERON:0000025,1.84e-07,114|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,1.74420125104357,0.878744730937887,1.1665793944457,0.979904951377538,0,0,0,0,1.02903774414379,1.14613375975503,1.54701627683233,1.21389876515759,1.05798195854407,0.633831403506179,1.35537812827653,0,0,0,0.7104801149461,1.19840044207362,1.53687322128622,1.8664130215526,1.08004750665353,2.52389953621658,0.856952953211411,0.441737081903227,1.46988959057945,2.68367318851062,1.83843757322004,0,1.53224805702225,1.38245879930619,1.31886287730194,2.01272815925301,2.08365348222704,0.558365998002762,3.37657566019008,1.37518422999129,1.17851434189467,0.854230084794618,0.931997229126503,0.37863096666592,0.604572480854284,0,0,0,0,0,0,0,0.681721290312231,0.519572009205738,0,1.40843419776681,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0.230615497256059,0.301445281105245,0,0.628332956648377,0,0,0,0,0,0,0,0.878342391034642,2.72280718857492,0,0,0,0,0.898743836428936,0.915001205637253,2.26177833803156,0.869121600961382,1.02286182932132,1.0389402227978,0.648965052271031,0.101839363850316,0.373220911830279,0,0,0.520481771850815,0.459804208866946,0.540186389416048,1.50704817835715,0.748401490664606,0.2562274405697,0.281105173679186,0.258703370739016,0.215567992932842,0.189106080167819,0,0,0,0,0,0,0,0,0,0.414251545071004,0,0,0,0,0,0.232533944750408,0,0,0.16455984991348,0.164167464079095,0.0810688095458557,0,0,0,0.630869845692382,1.02904612379284,0,0,0,0.46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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:69938 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9CZC8 | |||
|association_with_transcript=35bp_to_ENSMUST00000019268_5end | |||
|cluster_id=chr6:54516440..54516447,- | |||
|description=CAGE_peak_4_at_Scrn1_5end | |||
|id=chr6:54516440..54516447,- | |||
|ontology_enrichment_celltype=CL:0000221!1.23e-16!44;CL:0000133!1.23e-16!44;CL:0000055!6.61e-16!50;CL:0002319!6.66e-16!43;CL:0000117!2.21e-15!23;CL:0000337!2.21e-15!23;CL:0000393!3.54e-13!39;CL:0000211!3.54e-13!39;CL:0000540!1.37e-12!33;CL:0000047!1.37e-12!33;CL:0000031!1.37e-12!33;CL:0000404!1.37e-12!33;CL:0002321!7.08e-08!70;CL:0000220!7.08e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.98e-25,23;CL:0000337,3.98e-25,23;CL:0000221,5.49e-23,44;CL:0000133,5.49e-23,44;CL:0000393,2.49e-21,39;CL:0000211,2.49e-21,39;CL:0002319,2.69e-21,43;CL:0000540,1.60e-18,33;CL:0000047,1.60e-18,33;CL:0000031,1.60e-18,33;CL:0000404,1.60e-18,33;CL:0002321,6.56e-17,70;CL:0002609,1.79e-15,6;CL:0000723,2.11e-09,91;CL:0000048,2.11e-09,91;CL:0002608,9.79e-09,3;CL:0002613,1.39e-08,3;CL:0000034,1.68e-08,97;CL:0002494,1.38e-07,3;CL:0000737,1.38e-07,3;CL:0000746,1.38e-07,3;CL:0000513,1.38e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.27e-27!102;UBERON:0000924!1.27e-27!102;UBERON:0006601!1.27e-27!102;UBERON:0000073!2.41e-27!75;UBERON:0001016!2.41e-27!75;UBERON:0001017!1.99e-26!73;UBERON:0005743!1.99e-26!73;UBERON:0002346!1.18e-23!71;UBERON:0003075!1.18e-23!71;UBERON:0007284!1.18e-23!71;UBERON:0000033!1.71e-23!63;UBERON:0001049!4.88e-23!52;UBERON:0005068!4.88e-23!52;UBERON:0006241!4.88e-23!52;UBERON:0007135!4.88e-23!52;UBERON:0000955!6.85e-21!50;UBERON:0006238!6.85e-21!50;UBERON:0002616!3.83e-20!49;UBERON:0003056!3.00e-19!49;UBERON:0002020!3.46e-18!34;UBERON:0003080!7.85e-17!40;UBERON:0002780!3.10e-16!39;UBERON:0001890!3.10e-16!39;UBERON:0006240!3.10e-16!39;UBERON:0002791!2.21e-15!29;UBERON:0003528!2.21e-15!29;UBERON:0001893!2.21e-15!29;UBERON:0007811!1.60e-11!86;UBERON:0000153!7.12e-10!94;UBERON:0000956!1.17e-09!21;UBERON:0001869!1.17e-09!21;UBERON:0000203!1.17e-09!21;UBERON:0002420!2.83e-07!8;UBERON:0007245!2.83e-07!8;UBERON:0010009!2.83e-07!8;UBERON:0010011!2.83e-07!8;UBERON:0000454!2.83e-07!8;UBERON:0002619!5.36e-07!17;UBERON:0003076!7.16e-07!12;UBERON:0003057!7.16e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.34e-23,73;UBERON:0001016,2.66e-22,75;UBERON:0004121,2.76e-19,95;UBERON:0000924,2.76e-19,95;UBERON:0006601,2.76e-19,95;UBERON:0000073,2.97e-18,54;UBERON:0000955,1.41e-17,47;UBERON:0006238,1.41e-17,47;UBERON:0001049,4.39e-17,52;UBERON:0005068,4.39e-17,52;UBERON:0006241,4.39e-17,52;UBERON:0007135,4.39e-17,52;UBERON:0003528,6.59e-17,29;UBERON:0002791,6.59e-17,29;UBERON:0001893,6.59e-17,29;UBERON:0002616,3.79e-16,46;UBERON:0002020,6.85e-16,34;UBERON:0002780,2.49e-15,39;UBERON:0001890,2.49e-15,39;UBERON:0006240,2.49e-15,39;UBERON:0003080,7.60e-15,40;UBERON:0010371,8.05e-15,73;UBERON:0002346,1.75e-14,64;UBERON:0003075,1.75e-14,64;UBERON:0007284,1.75e-14,64;UBERON:0010314,3.26e-14,92;UBERON:0003056,5.46e-13,49;UBERON:0002420,1.18e-11,8;UBERON:0007245,1.18e-11,8;UBERON:0010009,1.18e-11,8;UBERON:0010011,1.18e-11,8;UBERON:0000454,1.18e-11,8;UBERON:0000369,7.44e-09,5;UBERON:0002435,7.44e-09,5;UBERON:0000204,7.44e-09,5;UBERON:0010082,7.44e-09,5;UBERON:0001954,9.10e-09,7;UBERON:0003022,9.10e-09,7;UBERON:0002421,9.10e-09,7;UBERON:0000349,9.10e-09,7;UBERON:0002600,9.10e-09,7;UBERON:0004111,2.82e-08,122;UBERON:0000956,3.05e-08,21;UBERON:0001869,3.05e-08,21;UBERON:0000203,3.05e-08,21;UBERON:0000025,1.84e-07,114 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,1.74420125104357,0.878744730937887,1.1665793944457,0.979904951377538,0,0,0,0,1.02903774414379,1.14613375975503,1.54701627683233,1.21389876515759,1.05798195854407,0.633831403506179,1.35537812827653,0,0,0,0.7104801149461,1.19840044207362,1.53687322128622,1.8664130215526,1.08004750665353,2.52389953621658,0.856952953211411,0.441737081903227,1.46988959057945,2.68367318851062,1.83843757322004,0,1.53224805702225,1.38245879930619,1.31886287730194,2.01272815925301,2.08365348222704,0.558365998002762,3.37657566019008,1.37518422999129,1.17851434189467,0.854230084794618,0.931997229126503,0.37863096666592,0.604572480854284,0,0,0,0,0,0,0,0.681721290312231,0.519572009205738,0,1.40843419776681,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0.230615497256059,0.301445281105245,0,0.628332956648377,0,0,0,0,0,0,0,0.878342391034642,2.72280718857492,0,0,0,0,0.898743836428936,0.915001205637253,2.26177833803156,0.869121600961382,1.02286182932132,1.0389402227978,0.648965052271031,0.101839363850316,0.373220911830279,0,0,0.520481771850815,0.459804208866946,0.540186389416048,1.50704817835715,0.748401490664606,0.2562274405697,0.281105173679186,0.258703370739016,0.215567992932842,0.189106080167819,0,0,0,0,0,0,0,0,0,0.414251545071004,0,0,0,0,0,0.232533944750408,0,0,0.16455984991348,0.164167464079095,0.0810688095458557,0,0,0,0.630869845692382,1.02904612379284,0,0,0,0.464473343720877,0,0,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0.189667900953082,0,0,0,0,0.0701358198903186,0.0632365371242573,0,0.470996183524124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.703270119553219,0,0.252470927204373,0,0.390438744296638,0,0.477937595905104,0.222798674082394,0,0,0,0.395287777946524,1.28528526568723,0.141940085208269,0,0,0.329940245945071,0,0.242780636154981,0,0,0,0.307435147943927,0,0.363533729477506,0,0,0,0,2.04263763452273,0.36012218806262,0.129358683782755,0.214337035031592,0,0.178368817602071,0.329098041204242,0,0,0,0,0.16488625294148,0.322928853391811,0.0603129249281559,0.119372344003136,0,0.291480836629851,1.11255181206306,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0,0,0.269728692769641,0,0,0,0,0.56369293868419,0,0,0.583353565032143,0.645799117388655,0.506868376472335,0.117357238645754,0.5208175393758,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0.920650473014354,0.572895513439397,1.54667864109319,0,0.755393897389701,0.675022500231806,0.45032120322422,0.906284817968409,0,0.31136204275253,0.798049746802062,0.853668028770671,0.243106717068294,0.628839487883947,0,0.222246727801615,0,0,0.252697211763798,0.25347929989024,0,0.187283014939765,0.384150914429216,0.402048282689293,0.476293691283074,0.463537303779422,0,0.412085900803307,0.147198920134397,0,0.177475806159338,0.476872379894642,0,0,0.169229215783353,0.365855945745545,0.263069711437843,0.135804113845862,0.561142271657738,0.118635018124174,0.29551344712669,0,0.154936841185966,0,1.24905288968973,0,0.214871054048298,0.191288332068843,0,0.231867835620421 | |||
|short_description=p4@Scrn1 | |||
}} |
Revision as of 23:28, 5 August 2015
Short description: | p4@Scrn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Scrn1_5end |
Coexpression cluster: | NA |
Association with transcript: | 35bp_to_ENSMUST00000019268_5end |
EntrezGene: | 69938 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.98e-25 | 23 |
neuroblast (sensu Vertebrata) | 3.98e-25 | 23 |
ectodermal cell | 5.49e-23 | 44 |
neurectodermal cell | 5.49e-23 | 44 |
electrically responsive cell | 2.49e-21 | 39 |
electrically active cell | 2.49e-21 | 39 |
neural cell | 2.69e-21 | 43 |
neuron | 1.60e-18 | 33 |
neuronal stem cell | 1.60e-18 | 33 |
neuroblast | 1.60e-18 | 33 |
electrically signaling cell | 1.60e-18 | 33 |
embryonic cell | 6.56e-17 | 70 |
neuron of cerebral cortex | 1.79e-15 | 6 |
somatic stem cell | 2.11e-09 | 91 |
multi fate stem cell | 2.11e-09 | 91 |
hippocampal neuron | 9.79e-09 | 3 |
striatum neuron | 1.39e-08 | 3 |
stem cell | 1.68e-08 | 97 |
cardiocyte | 1.38e-07 | 3 |
striated muscle cell | 1.38e-07 | 3 |
cardiac muscle cell | 1.38e-07 | 3 |
cardiac muscle myoblast | 1.38e-07 | 3 |