FFCP PHASE1:Mm9::chr6:83092381..83092423,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=20166|HGNC=|MCL_coexpression_id=1|UniProt=D3Z4N1|association_with_transcript=0bp_to_ENSMUST00000130622_5end|description=CAGE_peak_3_at_Rtkn_5end|id=chr6:83092381..83092423,+|ontology_enrichment_celltype=CL:0000221!4.20e-09!44;CL:0000133!4.20e-09!44;CL:0002319!1.17e-08!43;CL:0000540!2.25e-08!33;CL:0000047!2.25e-08!33;CL:0000031!2.25e-08!33;CL:0000404!2.25e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.21e-12,23;CL:0000337,2.21e-12,23;CL:0000540,2.45e-09,33;CL:0000047,2.45e-09,33;CL:0000031,2.45e-09,33;CL:0000404,2.45e-09,33;CL:0002614,5.92e-08,3;CL:0002610,6.26e-08,3;CL:0000393,1.65e-07,39;CL:0000211,1.65e-07,39;CL:0002612,2.60e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.53e-25!75;UBERON:0001016!1.53e-25!75;UBERON:0001017!1.90e-24!73;UBERON:0005743!1.90e-24!73;UBERON:0004121!1.67e-23!102;UBERON:0000924!1.67e-23!102;UBERON:0006601!1.67e-23!102;UBERON:0001049!7.04e-20!52;UBERON:0005068!7.04e-20!52;UBERON:0006241!7.04e-20!52;UBERON:0007135!7.04e-20!52;UBERON:0002346!1.44e-19!71;UBERON:0003075!1.44e-19!71;UBERON:0007284!1.44e-19!71;UBERON:0000955!1.50e-18!50;UBERON:0006238!1.50e-18!50;UBERON:0002616!7.68e-18!49;UBERON:0000033!9.35e-18!63;UBERON:0002020!2.64e-15!34;UBERON:0003080!8.15e-14!40;UBERON:0003056!1.23e-13!49;UBERON:0002780!4.06e-13!39;UBERON:0001890!4.06e-13!39;UBERON:0006240!4.06e-13!39;UBERON:0002791!5.05e-12!29;UBERON:0003528!5.05e-12!29;UBERON:0001893!5.05e-12!29;UBERON:0007811!7.55e-11!86;UBERON:0002619!1.42e-10!17;UBERON:0002021!9.88e-10!10;UBERON:0000411!9.88e-10!10;UBERON:0001950!9.88e-10!10;UBERON:0000153!1.83e-09!94;UBERON:0000956!1.06e-08!21;UBERON:0001869!1.06e-08!21;UBERON:0000203!1.06e-08!21;UBERON:0003076!5.98e-07!12;UBERON:0003057!5.98e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.86e-37,54;UBERON:0001017,2.06e-34,73;UBERON:0001049,1.22e-33,52;UBERON:0005068,1.22e-33,52;UBERON:0006241,1.22e-33,52;UBERON:0007135,1.22e-33,52;UBERON:0001016,2.56e-33,75;UBERON:0002020,2.26e-32,34;UBERON:0002346,3.37e-28,64;UBERON:0003075,3.37e-28,64;UBERON:0007284,3.37e-28,64;UBERON:0002021,2.38e-26,10;UBERON:0000411,2.38e-26,10;UBERON:0001950,2.38e-26,10;UBERON:0000955,5.74e-25,47;UBERON:0006238,5.74e-25,47;UBERON:0004121,6.59e-25,95;UBERON:0000924,6.59e-25,95;UBERON:0006601,6.59e-25,95;UBERON:0010371,5.96e-24,73;UBERON:0002616,2.71e-23,46;UBERON:0003528,3.31e-23,29;UBERON:0002791,3.31e-23,29;UBERON:0001893,3.31e-23,29;UBERON:0003080,2.14e-22,40;UBERON:0002780,1.18e-20,39;UBERON:0001890,1.18e-20,39;UBERON:0006240,1.18e-20,39;UBERON:0002619,9.40e-18,17;UBERON:0010314,1.04e-17,92;UBERON:0003056,2.08e-17,49;UBERON:0000956,1.03e-16,21;UBERON:0001869,1.03e-16,21;UBERON:0000203,1.03e-16,21;UBERON:0002240,1.01e-13,6;UBERON:0005174,1.01e-13,6;UBERON:0001137,1.01e-13,6;UBERON:0000025,5.39e-12,114;UBERON:0003076,1.04e-11,12;UBERON:0003057,1.04e-11,12;UBERON:0001948,2.46e-11,5;UBERON:0002315,2.46e-11,5;UBERON:0004111,8.38e-11,122;UBERON:0002950,3.50e-10,4;UBERON:0001891,3.50e-10,4;UBERON:0009616,3.50e-10,4;UBERON:0010286,3.50e-10,4;UBERON:0011216,1.06e-08,194;UBERON:0002038,5.92e-08,3;UBERON:0009663,5.92e-08,3;UBERON:0009661,5.92e-08,3;UBERON:0000125,5.92e-08,3;UBERON:0002308,5.92e-08,3;UBERON:0004684,6.26e-08,3;UBERON:0002275,6.26e-08,3;UBERON:0002420,1.32e-07,8;UBERON:0007245,1.32e-07,8;UBERON:0010009,1.32e-07,8;UBERON:0010011,1.32e-07,8;UBERON:0000454,1.32e-07,8;UBERON:0002257,2.60e-07,3|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,2.04103896362567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.439372365468944,0,0.979904951377538,0,0,0,0,0,0.286533439938757,0,0,0,1.26766280701236,0,0,0.899899717281399,0,0,0,0.384218305321555,0,0,0,6.28432165688368,6.62605622854841,0.244981598429908,0.0958454710182364,0.919218786610021,6.60695285996332,8.93811366596314,8.60196586234964,0.263772575460388,0.457438218012048,0,12.2840519560608,5.06486349028512,7.94550888439413,5.00868595305235,3.84403538157578,1.4911955666024,0.530083353332288,0.453429360640713,0,0,0,0,0,0,0.421333260395256,0,0,0,0.563373679106722,0,0,0,0.432982082022428,0,0,0.11418387971906,0,0.148442139064825,0.346970653532272,0,0,0.150722640552623,0,0,0,0,0,0.161766849947409,0,0,0,0.878342391034642,0.41889341362691,0,0.239630249011841,0.599902730993408,0.127070227073065,10.4853447583376,21.5025283324754,1.50785222535437,17.7300806596122,18.4115129277838,8.3115217823824,12.3303359931496,0,0,0,0.631325567659422,0.130120442962704,0,0,0,0.476255494059295,0.12811372028485,0.187403449119458,0.517406741478031,0.431135985865684,0,0,0,0,0,0.205782136407943,0,0,0,0,0.828503090142008,0.234526059981096,0.540186184383045,0.473489471170421,0.196764231747404,0.154267112887378,0.465067889500816,0.536546802799238,0.233530684734339,0.329119699826961,0.164167464079095,0.0810688095458557,0.292399974850665,0.219550115291051,0,12.4071069652835,0.514523061896422,0,0,0,0.232236671860439,0,0,0,0,0.474529061544512,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0.193952487167626,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275936746304732,11.8807436590966,8.67366480782304,0,0,1.26203287766503,0.780877488593277,0.646270193198397,0.477937595905104,0.668396022247182,0.283076530788832,0,0.584511715822624,0,8.03303291054518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0.214337035031592,0,0.356737635204141,0.493647061806363,0.608929898229199,0,0,0.220528398054962,0.65954501176592,0.161464426695906,0,0.119372344003136,0.328281799490123,0,12.4234952347041,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.418176592028937,0.218362563746178,0.134864346384821,0,0.26175594198403,0,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0.241584120826006,0,0,0,0,0.129920822977795,0,0,0.120195449519969,0,0.201932899896295,0.228620419965,0.100826185136841,0,0,0,0,0,0.179427713218951,0.503653849092235,0.386379188064381,0,0,0.643105137237198,0,10.7302850097243,12.889106622201,11.4579102687879,9.10821866421544,16.4419804744954,33.2373314851468,19.5756525067224,22.0657389579868,30.8136838109259,21.7459330935764,0,0,0.170733605754134,0,0.419226325255965,0.367687016900028,0,0.206035057238894,0.320919209591815,0.252697211763798,0,0.188626341386076,0.37456602987953,0.256100609619477,0.229741875822453,0.476293691283074,0.347652977834566,0.192909220463705,0,0.147198920134397,0,0,0.238436189947321,0.145346416632329,0.0941093804153306,0.25384382367503,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0.409231043169689,0.154936841185966,0.192906610981141,0,0.467863216890817,0.214871054048298,0.382576664137687,0.441182838239031,0|short_description=p3@Rtkn}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20166 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3Z4N1 | |||
|association_with_transcript=0bp_to_ENSMUST00000130622_5end | |||
|cluster_id=chr6:83092381..83092423,+ | |||
|description=CAGE_peak_3_at_Rtkn_5end | |||
|id=chr6:83092381..83092423,+ | |||
|ontology_enrichment_celltype=CL:0000221!4.20e-09!44;CL:0000133!4.20e-09!44;CL:0002319!1.17e-08!43;CL:0000540!2.25e-08!33;CL:0000047!2.25e-08!33;CL:0000031!2.25e-08!33;CL:0000404!2.25e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.21e-12,23;CL:0000337,2.21e-12,23;CL:0000540,2.45e-09,33;CL:0000047,2.45e-09,33;CL:0000031,2.45e-09,33;CL:0000404,2.45e-09,33;CL:0002614,5.92e-08,3;CL:0002610,6.26e-08,3;CL:0000393,1.65e-07,39;CL:0000211,1.65e-07,39;CL:0002612,2.60e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.53e-25!75;UBERON:0001016!1.53e-25!75;UBERON:0001017!1.90e-24!73;UBERON:0005743!1.90e-24!73;UBERON:0004121!1.67e-23!102;UBERON:0000924!1.67e-23!102;UBERON:0006601!1.67e-23!102;UBERON:0001049!7.04e-20!52;UBERON:0005068!7.04e-20!52;UBERON:0006241!7.04e-20!52;UBERON:0007135!7.04e-20!52;UBERON:0002346!1.44e-19!71;UBERON:0003075!1.44e-19!71;UBERON:0007284!1.44e-19!71;UBERON:0000955!1.50e-18!50;UBERON:0006238!1.50e-18!50;UBERON:0002616!7.68e-18!49;UBERON:0000033!9.35e-18!63;UBERON:0002020!2.64e-15!34;UBERON:0003080!8.15e-14!40;UBERON:0003056!1.23e-13!49;UBERON:0002780!4.06e-13!39;UBERON:0001890!4.06e-13!39;UBERON:0006240!4.06e-13!39;UBERON:0002791!5.05e-12!29;UBERON:0003528!5.05e-12!29;UBERON:0001893!5.05e-12!29;UBERON:0007811!7.55e-11!86;UBERON:0002619!1.42e-10!17;UBERON:0002021!9.88e-10!10;UBERON:0000411!9.88e-10!10;UBERON:0001950!9.88e-10!10;UBERON:0000153!1.83e-09!94;UBERON:0000956!1.06e-08!21;UBERON:0001869!1.06e-08!21;UBERON:0000203!1.06e-08!21;UBERON:0003076!5.98e-07!12;UBERON:0003057!5.98e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.86e-37,54;UBERON:0001017,2.06e-34,73;UBERON:0001049,1.22e-33,52;UBERON:0005068,1.22e-33,52;UBERON:0006241,1.22e-33,52;UBERON:0007135,1.22e-33,52;UBERON:0001016,2.56e-33,75;UBERON:0002020,2.26e-32,34;UBERON:0002346,3.37e-28,64;UBERON:0003075,3.37e-28,64;UBERON:0007284,3.37e-28,64;UBERON:0002021,2.38e-26,10;UBERON:0000411,2.38e-26,10;UBERON:0001950,2.38e-26,10;UBERON:0000955,5.74e-25,47;UBERON:0006238,5.74e-25,47;UBERON:0004121,6.59e-25,95;UBERON:0000924,6.59e-25,95;UBERON:0006601,6.59e-25,95;UBERON:0010371,5.96e-24,73;UBERON:0002616,2.71e-23,46;UBERON:0003528,3.31e-23,29;UBERON:0002791,3.31e-23,29;UBERON:0001893,3.31e-23,29;UBERON:0003080,2.14e-22,40;UBERON:0002780,1.18e-20,39;UBERON:0001890,1.18e-20,39;UBERON:0006240,1.18e-20,39;UBERON:0002619,9.40e-18,17;UBERON:0010314,1.04e-17,92;UBERON:0003056,2.08e-17,49;UBERON:0000956,1.03e-16,21;UBERON:0001869,1.03e-16,21;UBERON:0000203,1.03e-16,21;UBERON:0002240,1.01e-13,6;UBERON:0005174,1.01e-13,6;UBERON:0001137,1.01e-13,6;UBERON:0000025,5.39e-12,114;UBERON:0003076,1.04e-11,12;UBERON:0003057,1.04e-11,12;UBERON:0001948,2.46e-11,5;UBERON:0002315,2.46e-11,5;UBERON:0004111,8.38e-11,122;UBERON:0002950,3.50e-10,4;UBERON:0001891,3.50e-10,4;UBERON:0009616,3.50e-10,4;UBERON:0010286,3.50e-10,4;UBERON:0011216,1.06e-08,194;UBERON:0002038,5.92e-08,3;UBERON:0009663,5.92e-08,3;UBERON:0009661,5.92e-08,3;UBERON:0000125,5.92e-08,3;UBERON:0002308,5.92e-08,3;UBERON:0004684,6.26e-08,3;UBERON:0002275,6.26e-08,3;UBERON:0002420,1.32e-07,8;UBERON:0007245,1.32e-07,8;UBERON:0010009,1.32e-07,8;UBERON:0010011,1.32e-07,8;UBERON:0000454,1.32e-07,8;UBERON:0002257,2.60e-07,3 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,2.04103896362567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.439372365468944,0,0.979904951377538,0,0,0,0,0,0.286533439938757,0,0,0,1.26766280701236,0,0,0.899899717281399,0,0,0,0.384218305321555,0,0,0,6.28432165688368,6.62605622854841,0.244981598429908,0.0958454710182364,0.919218786610021,6.60695285996332,8.93811366596314,8.60196586234964,0.263772575460388,0.457438218012048,0,12.2840519560608,5.06486349028512,7.94550888439413,5.00868595305235,3.84403538157578,1.4911955666024,0.530083353332288,0.453429360640713,0,0,0,0,0,0,0.421333260395256,0,0,0,0.563373679106722,0,0,0,0.432982082022428,0,0,0.11418387971906,0,0.148442139064825,0.346970653532272,0,0,0.150722640552623,0,0,0,0,0,0.161766849947409,0,0,0,0.878342391034642,0.41889341362691,0,0.239630249011841,0.599902730993408,0.127070227073065,10.4853447583376,21.5025283324754,1.50785222535437,17.7300806596122,18.4115129277838,8.3115217823824,12.3303359931496,0,0,0,0.631325567659422,0.130120442962704,0,0,0,0.476255494059295,0.12811372028485,0.187403449119458,0.517406741478031,0.431135985865684,0,0,0,0,0,0.205782136407943,0,0,0,0,0.828503090142008,0.234526059981096,0.540186184383045,0.473489471170421,0.196764231747404,0.154267112887378,0.465067889500816,0.536546802799238,0.233530684734339,0.329119699826961,0.164167464079095,0.0810688095458557,0.292399974850665,0.219550115291051,0,12.4071069652835,0.514523061896422,0,0,0,0.232236671860439,0,0,0,0,0.474529061544512,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0.193952487167626,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275936746304732,11.8807436590966,8.67366480782304,0,0,1.26203287766503,0.780877488593277,0.646270193198397,0.477937595905104,0.668396022247182,0.283076530788832,0,0.584511715822624,0,8.03303291054518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0.214337035031592,0,0.356737635204141,0.493647061806363,0.608929898229199,0,0,0.220528398054962,0.65954501176592,0.161464426695906,0,0.119372344003136,0.328281799490123,0,12.4234952347041,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.418176592028937,0.218362563746178,0.134864346384821,0,0.26175594198403,0,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0.241584120826006,0,0,0,0,0.129920822977795,0,0,0.120195449519969,0,0.201932899896295,0.228620419965,0.100826185136841,0,0,0,0,0,0.179427713218951,0.503653849092235,0.386379188064381,0,0,0.643105137237198,0,10.7302850097243,12.889106622201,11.4579102687879,9.10821866421544,16.4419804744954,33.2373314851468,19.5756525067224,22.0657389579868,30.8136838109259,21.7459330935764,0,0,0.170733605754134,0,0.419226325255965,0.367687016900028,0,0.206035057238894,0.320919209591815,0.252697211763798,0,0.188626341386076,0.37456602987953,0.256100609619477,0.229741875822453,0.476293691283074,0.347652977834566,0.192909220463705,0,0.147198920134397,0,0,0.238436189947321,0.145346416632329,0.0941093804153306,0.25384382367503,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0.409231043169689,0.154936841185966,0.192906610981141,0,0.467863216890817,0.214871054048298,0.382576664137687,0.441182838239031,0 | |||
|short_description=p3@Rtkn | |||
}} |
Revision as of 04:16, 6 August 2015
Short description: | p3@Rtkn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rtkn_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000130622_5end |
EntrezGene: | 20166 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.21e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.21e-12 | 23 |
neuron | 2.45e-09 | 33 |
neuronal stem cell | 2.45e-09 | 33 |
neuroblast | 2.45e-09 | 33 |
electrically signaling cell | 2.45e-09 | 33 |
neuron of the substantia nigra | 5.92e-08 | 3 |
raphe nuclei neuron | 6.26e-08 | 3 |
electrically responsive cell | 1.65e-07 | 39 |
electrically active cell | 1.65e-07 | 39 |
neuron of the ventral spinal cord | 2.60e-07 | 3 |