FFCP PHASE2:Hg19::chr5:149782779..149782826,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:972 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding |HGNC=HGNC:1697 |TSSclassifier=strong |...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=972 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | ||
|HGNC= | |HGNC=1697 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=O78208 | ||
|association_with_transcript=48bp_to_M28590_5end | |association_with_transcript=48bp_to_M28590_5end | ||
|cluster_id=chr5:149782779..149782826,- | |cluster_id=chr5:149782779..149782826,- | ||
Latest revision as of 04:31, 16 September 2015
| Short description: | p3@CD74 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_CD74_5end |
| Coexpression cluster: | C187_migratory_immature_Dendritic_CD19_CD14_Monocytederived_Macrophage |
| Association with transcript: | 48bp_to_M28590_5end |
| EntrezGene: | CD74 |
| HGNC: | 1697 |
| UniProt: | O78208 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@CD74 |
|---|
0
10
20
30
40
50
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| macrophage dendritic cell progenitor | 1.11e-78 | 61 |
| monopoietic cell | 1.17e-74 | 59 |
| monocyte | 1.17e-74 | 59 |
| monoblast | 1.17e-74 | 59 |
| promonocyte | 1.17e-74 | 59 |
| defensive cell | 3.59e-73 | 48 |
| phagocyte | 3.59e-73 | 48 |
| granulocyte monocyte progenitor cell | 3.48e-70 | 67 |
| myeloid lineage restricted progenitor cell | 4.42e-65 | 66 |
| myeloid leukocyte | 3.34e-63 | 72 |
Showing 1 to 10 of 33 entries
| Ontology term | p-value | n |
|---|---|---|
| bone marrow | 6.18e-60 | 76 |
| hematopoietic system | 3.41e-56 | 98 |
| blood island | 3.41e-56 | 98 |
| bone element | 2.40e-54 | 82 |
| immune system | 4.02e-54 | 93 |
| hemolymphoid system | 2.20e-51 | 108 |
| skeletal element | 4.72e-48 | 90 |
| skeletal system | 1.32e-41 | 100 |
| lateral plate mesoderm | 8.92e-25 | 203 |
| musculoskeletal system | 1.91e-20 | 167 |
Showing 1 to 10 of 14 entries
