FFCP PHASE2:Hg19::chr20:388679..388748,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:10616 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:15864 |TSScla...") |
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| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=10616 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=15864 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q9BYM8,G3XAG9,B4DML5,A6PVJ6 | ||
|association_with_transcript=0bp_to_ENST00000356286,ENST00000382214,ENST00000415942,ENST00000475269,NM_006462,NM_031229,uc002wdo.2,uc002wdp.3,uc002wdq.3,uc002wdr.3,uc010fzy.2,uc010zpl.1,uc010zpm.1_5end | |association_with_transcript=0bp_to_ENST00000356286,ENST00000382214,ENST00000415942,ENST00000475269,NM_006462,NM_031229,uc002wdo.2,uc002wdp.3,uc002wdq.3,uc002wdr.3,uc010fzy.2,uc010zpl.1,uc010zpm.1_5end | ||
|cluster_id=chr20:388679..388748,+ | |cluster_id=chr20:388679..388748,+ | ||
Latest revision as of 04:53, 16 September 2015
| Short description: | p2@RBCK1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_RBCK1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000356286, ENST00000382214, ENST00000415942, ENST00000475269, NM_006462, NM_031229, uc002wdo.2, uc002wdp.3, uc002wdq.3, uc002wdr.3, uc010fzy.2, uc010zpl.1, uc010zpm.1_5end |
| EntrezGene: | RBCK1 |
| HGNC: | 15864 |
| UniProt: | Q9BYM8G3XAG9B4DML5A6PVJ6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@RBCK1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 1.10e-42 | 253 |
| embryonic cell | 7.93e-30 | 250 |
| endodermal cell | 7.60e-17 | 58 |
| mesodermal cell | 3.54e-14 | 121 |
| squamous epithelial cell | 6.33e-13 | 63 |
| endo-epithelial cell | 2.52e-11 | 42 |
| lining cell | 7.61e-09 | 58 |
| barrier cell | 7.61e-09 | 58 |
| kidney cell | 2.37e-08 | 17 |
| kidney epithelial cell | 2.37e-08 | 17 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| trunk | 3.53e-20 | 199 |
| epithelial tube | 9.28e-18 | 117 |
| unilaminar epithelium | 1.01e-16 | 148 |
| mesenchyme | 1.18e-14 | 160 |
| entire embryonic mesenchyme | 1.18e-14 | 160 |
| subdivision of trunk | 2.78e-13 | 112 |
| trunk mesenchyme | 4.57e-13 | 122 |
| abdominal segment of trunk | 2.65e-11 | 60 |
| abdomen | 2.65e-11 | 60 |
| trunk region element | 5.10e-11 | 101 |
Showing 1 to 10 of 60 entries
| Ontology term | p-value | n |
|---|---|---|
| cell type cancer | 2.25e-12 | 143 |
| carcinoma | 2.62e-09 | 106 |
| cancer | 6.63e-08 | 235 |
| disease of cellular proliferation | 8.26e-08 | 239 |
| disease of anatomical entity | 4.15e-07 | 39 |
Showing 1 to 5 of 5 entries
