FF:11661-122F5: Difference between revisions

Revision as of 14:52, 29 June 2012

Name:	Astrocyte - cerebellum, donor3
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	cerebellum
dev stage	NA
sex	NA
age	NA
cell type	astrocyte
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:5852
catalog number	SC1815
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-4.829898e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.199
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0804
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.211
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0112
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.363
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.214
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.118
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.116
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.409
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.264
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.294
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.475
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.353
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0312
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.256
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.211
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.648
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.118
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.504
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.294
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12117

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.197
MA0003.1	MA0003.1	0.511
MA0004.1	MA0004.1	0.46
MA0006.1	MA0006.1	0.291
MA0007.1	MA0007.1	0.794
MA0009.1	MA0009.1	0.0721
MA0014.1	MA0014.1	0.242
MA0017.1	MA0017.1	0.541
MA0018.2	MA0018.2	0.21
MA0019.1	MA0019.1	0.162
MA0024.1	MA0024.1	0.583
MA0025.1	MA0025.1	0.983
MA0027.1	MA0027.1	0.966
MA0028.1	MA0028.1	2.44983e-4
MA0029.1	MA0029.1	0.983
MA0030.1	MA0030.1	0.287
MA0031.1	MA0031.1	0.0482
MA0035.2	MA0035.2	0.749
MA0038.1	MA0038.1	2.29757e-5
MA0039.2	MA0039.2	0.654
MA0040.1	MA0040.1	0.332
MA0041.1	MA0041.1	0.434
MA0042.1	MA0042.1	0.898
MA0043.1	MA0043.1	0.00258
MA0046.1	MA0046.1	0.05
MA0047.2	MA0047.2	0.12
MA0048.1	MA0048.1	0.15
MA0050.1	MA0050.1	1.463e-6
MA0051.1	MA0051.1	4.39332e-5
MA0052.1	MA0052.1	0.557
MA0055.1	MA0055.1	0.265
MA0057.1	MA0057.1	0.95
MA0058.1	MA0058.1	0.221
MA0059.1	MA0059.1	0.336
MA0060.1	MA0060.1	6.06544e-7
MA0061.1	MA0061.1	0.117
MA0062.2	MA0062.2	2.65812e-10
MA0065.2	MA0065.2	0.431
MA0066.1	MA0066.1	0.752
MA0067.1	MA0067.1	0.012
MA0068.1	MA0068.1	0.0127
MA0069.1	MA0069.1	0.479
MA0070.1	MA0070.1	0.0106
MA0071.1	MA0071.1	0.993
MA0072.1	MA0072.1	0.914
MA0073.1	MA0073.1	0.851
MA0074.1	MA0074.1	0.891
MA0076.1	MA0076.1	1.33538e-5
MA0077.1	MA0077.1	0.0783
MA0078.1	MA0078.1	0.529
MA0079.2	MA0079.2	0.905
MA0080.2	MA0080.2	5.35078e-10
MA0081.1	MA0081.1	0.00215
MA0083.1	MA0083.1	4.15917e-4
MA0084.1	MA0084.1	0.976
MA0087.1	MA0087.1	0.992
MA0088.1	MA0088.1	0.0964
MA0090.1	MA0090.1	0.0584
MA0091.1	MA0091.1	0.369
MA0092.1	MA0092.1	1
MA0093.1	MA0093.1	0.376
MA0099.2	MA0099.2	0.00548
MA0100.1	MA0100.1	0.182
MA0101.1	MA0101.1	0.0398
MA0102.2	MA0102.2	3.73349e-4
MA0103.1	MA0103.1	0.448
MA0104.2	MA0104.2	0.0735
MA0105.1	MA0105.1	0.0442
MA0106.1	MA0106.1	0.804
MA0107.1	MA0107.1	0.167
MA0108.2	MA0108.2	2.07574e-8
MA0111.1	MA0111.1	0.248
MA0112.2	MA0112.2	0.632
MA0113.1	MA0113.1	0.204
MA0114.1	MA0114.1	0.583
MA0115.1	MA0115.1	0.39
MA0116.1	MA0116.1	0.0287
MA0117.1	MA0117.1	0.22
MA0119.1	MA0119.1	0.829
MA0122.1	MA0122.1	0.991
MA0124.1	MA0124.1	0.495
MA0125.1	MA0125.1	0.301
MA0131.1	MA0131.1	0.5
MA0135.1	MA0135.1	0.00806
MA0136.1	MA0136.1	4.04914e-14
MA0137.2	MA0137.2	0.148
MA0138.2	MA0138.2	0.346
MA0139.1	MA0139.1	0.4
MA0140.1	MA0140.1	0.959
MA0141.1	MA0141.1	0.395
MA0142.1	MA0142.1	0.0888
MA0143.1	MA0143.1	0.0934
MA0144.1	MA0144.1	0.234
MA0145.1	MA0145.1	0.63
MA0146.1	MA0146.1	0.404
MA0147.1	MA0147.1	0.097
MA0148.1	MA0148.1	0.182
MA0149.1	MA0149.1	0.0483
MA0150.1	MA0150.1	9.7064e-4
MA0152.1	MA0152.1	0.924
MA0153.1	MA0153.1	0.206
MA0154.1	MA0154.1	0.294
MA0155.1	MA0155.1	0.0183
MA0156.1	MA0156.1	1.23304e-12
MA0157.1	MA0157.1	0.116
MA0159.1	MA0159.1	0.208
MA0160.1	MA0160.1	0.561
MA0162.1	MA0162.1	0.259
MA0163.1	MA0163.1	0.0573
MA0164.1	MA0164.1	0.806
MA0258.1	MA0258.1	0.367
MA0259.1	MA0259.1	0.242

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12117

Novel motif	Logo	P-value
1	1	0.0395
10	10	0.00896
100	100	0.825
101	101	0.283
102	102	0.206
103	103	0.0791
104	104	0.443
105	105	0.0844
106	106	0.508
107	107	0.00617
108	108	0.773
109	109	0.53
11	11	0.924
110	110	0.95
111	111	0.0455
112	112	0.218
113	113	0.314
114	114	0.0403
115	115	0.427
116	116	0.103
117	117	0.0581
118	118	0.166
119	119	0.638
12	12	0.719
120	120	0.572
121	121	0.639
122	122	0.927
123	123	0.0196
124	124	0.833
125	125	0.398
126	126	0.591
127	127	0.586
128	128	0.273
129	129	0.637
13	13	0.347
130	130	0.132
131	131	0.138
132	132	0.339
133	133	0.994
134	134	0.231
135	135	0.697
136	136	0.827
137	137	0.0113
138	138	0.114
139	139	0.106
14	14	0.891
140	140	0.9
141	141	0.167
142	142	0.199
143	143	0.925
144	144	0.681
145	145	0.434
146	146	0.304
147	147	0.433
148	148	0.0634
149	149	0.337
15	15	0.186
150	150	0.42
151	151	0.914
152	152	0.463
153	153	0.0281
154	154	0.485
155	155	0.031
156	156	0.839
157	157	0.435
158	158	0.115
159	159	0.798
16	16	0.925
160	160	0.266
161	161	0.562
162	162	0.149
163	163	0.463
164	164	0.086
165	165	0.113
166	166	0.459
167	167	0.308
168	168	0.131
169	169	0.341
17	17	0.938
18	18	0.652
19	19	0.249
2	2	0.696
20	20	0.62
21	21	0.333
22	22	0.589
23	23	0.74
24	24	0.437
25	25	0.318
26	26	0.715
27	27	0.801
28	28	0.182
29	29	0.24
3	3	0.144
30	30	0.0719
31	31	0.27
32	32	6.37039e-5
33	33	0.837
34	34	0.184
35	35	0.584
36	36	0.117
37	37	0.248
38	38	0.635
39	39	0.548
4	4	0.574
40	40	0.714
41	41	0.439
42	42	0.155
43	43	0.357
44	44	0.76
45	45	0.454
46	46	0.962
47	47	0.311
48	48	0.835
49	49	0.327
5	5	0.215
50	50	0.74
51	51	0.885
52	52	0.489
53	53	0.367
54	54	0.861
55	55	0.564
56	56	0.704
57	57	0.916
58	58	0.137
59	59	0.162
6	6	0.56
60	60	0.998
61	61	0.195
62	62	0.213
63	63	0.912
64	64	0.319
65	65	0.311
66	66	0.781
67	67	0.631
68	68	0.00322
69	69	0.205
7	7	0.453
70	70	0.803
71	71	0.14
72	72	0.284
73	73	0.867
74	74	0.324
75	75	0.0112
76	76	0.00304
77	77	0.269
78	78	0.0728
79	79	0.106
8	8	0.56
80	80	0.524
81	81	0.868
82	82	0.865
83	83	0.805
84	84	0.56
85	85	0.768
86	86	0.332
87	87	0.477
88	88	0.43
89	89	0.127
9	9	0.506
90	90	0.0157
91	91	0.751
92	92	0.376
93	93	0.163
94	94	0.758
95	95	0.149
96	96	0.283
97	97	0.981
98	98	0.71
99	99	0.0106

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12117

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000195 human astrocyte of the cerebellum sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000333 (migratory neural crest cell)
0000055 (non-terminally differentiated cell)
0000548 (animal cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0002319 (neural cell)
0000221 (ectodermal cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000219 (motile cell)
0000123 (neuron associated cell (sensu Vertebrata))
0000125 (glial cell)
0000030 (glioblast)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002453 (oligodendrocyte precursor cell)
0002603 (astrocyte of the cerebellum)
0000133 (neurectodermal cell)
0000339 (glioblast (sensu Vertebrata))

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0002037 (cerebellum)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0002346 (neurectoderm)
0000064 (organ part)
0000073 (regional part of nervous system)
0004121 (ectoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000025 (tube)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0002616 (regional part of brain)
0001062 (anatomical entity)
0000119 (cell layer)
0005291 (embryonic tissue)
0002680 (regional part of metencephalon)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0001048 (primordium)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0001017 (central nervous system)
0001016 (nervous system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0001895 (metencephalon)
0002028 (hindbrain)
0003075 (neural plate)
0001049 (neural tube)
0006238 (future brain)
0006601 (presumptive ectoderm)
0005068 (neural rod)
0006241 (future spinal cord)
0010092 (future metencephalon)
0003076 (posterior neural tube)
0007277 (presumptive hindbrain)
0006215 (rhombic lip)
0007284 (presumptive neural plate)
0003057 (chordal neural plate)
0007135 (neural keel)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 6: / Line 6: @@
 |created_by=
 |creation_date=
+|datafreeze_phase=1
 |def=
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!ZNF804A;;chr9:2015275..2015287,+!p8@SMARCA2!0.22!1.57!SMARCA2;;chr19:42788611..42788634,+!p2@CIC!0.22!1.57!CIC;;chr6:144329531..144329546,-!p5@PLAGL1!0.22!1.57!PLAGL1;;chr8:86089341..86089362,+!p5@E2F5!0.22!1.25!E2F5;;chr12:10865870..10865888,-!p6@CSDA!0.22!1.25!CSDA;;chr3:14989024..14989041,+!p3@NR2C2!0.22!1.25!NR2C2;;chr3:71355163..71355209,-!p5@FOXP1!0.22!1.25!FOXP1;;chr19:50435736..50435781,+!p3@ATF5!0.22!1.25!ATF5;;chr5:72743793..72743855,-!p4@FOXD1!0.22!0.94!FOXD1;;chr9:130953817..130953876,-!p1@CIZ1!0.21!87.77!CIZ1;;chr14:75894714..75894733,+!p1@JDP2!0.21!41.38!JDP2;;chr9:137218281..137218340,+!p1@RXRA!0.21!41.06!RXRA;;chr6:31515337..31515420,+!p1@NFKBIL1!0.21!26.33!NFKBIL1;;chr15:85291785..85291848,+!p1@ZNF592!0.21!26.02!ZNF592;;chr14:23755297..23755350,-!p1@HOMEZ!0.21!16.93!HOMEZ;;chr17:7387524..7387597,-!p1@ZBTB4!0.21!13.17!ZBTB4;;chr12:80084768..80084821,-!p2@PAWR!0.21!9.40!PAWR;;chr4:146859927..146860055,-!p1@ZNF827!0.21!8.15!ZNF827;;chr3:44596679..44596726,+!p1@ZNF167!0.21!5.64!ZNF167;;chr19:47615477..47615491,-!p3@ZC3H4!0.21!5.64!ZC3H4;;chr19:53758094..53758147,-!p1@ZNF677!0.21!4.70!ZNF677;;chr19:45252008..45252024,+!p2@BCL3!0.21!4.07!BCL3;;chr3:5021191..5021202,+!p3@BHLHE40!0.21!3.13!BHLHE40;;chr1:164528340..164528379,+!p4@PBX1!0.21!2.82!PBX1;;chr20:48808114..48808168,+!p5@CEBPB!0.21!2.82!CEBPB;;chr17:61919985..61920012,-!p3@SMARCD2!0.21!2.82!SMARCD2;;chr16:73092963..73093001,-!p2@ZFHX3!0.21!2.51!ZFHX3;;chr1:149871171..149871192,+!p4@BOLA1!0.21!2.51!BOLA1;;chr1:935398..935465,-!p2@HES4!0.21!2.19!HES4;;chr17:2304226..2304239,-!p3@MNT!0.21!2.19!MNT;;chr18:47814186..47814232,-!p2@CXXC1!0.21!2.19!CXXC1;;chr19:12203100..12203132,+!p1@ZNF788!0.21!2.19!ZNF788;;chr16:79634595..79634620,-!p2@MAF!0.21!1.88!MAF;;chr19:47922750..47922795,-!p1@MEIS3!0.21!1.57!MEIS3;;chr1:8763510..8763538,-!p15@RERE!0.21!1.57!RERE;;chr12:6798692..6798723,-!p5@ZNF384!0.21!1.57!ZNF384;;chr16:3333375..3333388,+!p3@ZNF263!0.21!1.25!ZNF263;;chr18:19749386..19749404,+!p2@GATA6!0.21!1.25!GATA6;;chr1:78445179..78445193,-!p5@FUBP1!0.21!1.25!FUBP1;;chr7:137563905..137563916,-!p11@CREB3L2!0.21!1.25!CREB3L2;;chr14:74253948..74253964,-!p9@C14orf43!0.21!0.94!C14orf43;;chr2:60778035..60778060,-!p4@BCL11A!0.21!0.94!BCL11A;;chr19:44764031..44764072,+!p1@ZNF233!0.21!0.94!ZNF233;;chr1:6684918..6684936,+!p2@THAP3!0.21!0.94!THAP3;;chr15:37392593..37392607,-!p13@MEIS2!0.21!0.94!MEIS2;;chr15:31618889..31618902,+!p15@KLF13!0.21!0.63!KLF13;;chr15:57511589..57511608,+!p4@TCF12!0.21!0.63!TCF12;;chr15:60296504..60296518,+!p3@FOXB1!0.21!0.63!FOXB1;;chr15:66994718..66994729,+!p4@SMAD6!0.21!0.63!SMAD6;;chr15:67418099..67418118,+!p16@SMAD3!0.21!0.63!SMAD3;;chr15:67458491..67458505,+!p18@SMAD3!0.21!0.63!SMAD3;;chr15:80696836..80696853,+!p7@ARNT2!0.21!0.63!ARNT2;;chr15:83953474..83953483,-!p3@BNC1!0.21!0.63!BNC1;;chr15:90294087..90294115,-!p1@MESP1!0.21!0.63!MESP1;;chr16:1031762..1031781,+!p1@SOX8!0.21!0.63!SOX8;;chr16:49891694..49891706,-!p10@ZNF423!0.21!0.63!ZNF423;;chr16:51185149..51185160,-!p5@SALL1!0.21!0.63!SALL1;;chr16:54964690..54964703,+!p4@IRX5!0.21!0.63!IRX5;;chr16:79634581..79634592,-!p4@MAF!0.21!0.63!MAF;;chr17:38244601..38244612,+!p6@THRA!0.21!0.63!THRA;;chr17:40540591..40540600,-!p3@STAT3!0.21!0.63!STAT3;;chr17:45928521..45928539,-!p1@SP6!0.21!0.63!SP6;;chr17:46131916..46131952,+!p7@NFE2L1!0.21!0.63!NFE2L1;;chr17:46622175..46622186,-!p12@HOXB2!0.21!0.63!HOXB2;;

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FF:11661-122F5: Difference between revisions

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Revision as of 14:52, 29 June 2012

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