FF:10514-107E1: Difference between revisions

Revision as of 19:14, 9 July 2012

Name:	melanoma cell line:COLO 679
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	female
age	47
cell type	melanocyte
cell line	COLO 679
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0294
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.303
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0212
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0.934
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.151
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0.314
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.108
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.189
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0.184
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0613
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0.115
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11281

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.229
MA0003.1	MA0003.1	0.472
MA0004.1	MA0004.1	2.36134e-4
MA0006.1	MA0006.1	0.155
MA0007.1	MA0007.1	0.732
MA0009.1	MA0009.1	0.38
MA0014.1	MA0014.1	0.812
MA0017.1	MA0017.1	0.029
MA0018.2	MA0018.2	0.0466
MA0019.1	MA0019.1	0.847
MA0024.1	MA0024.1	0.0532
MA0025.1	MA0025.1	0.0962
MA0027.1	MA0027.1	0.933
MA0028.1	MA0028.1	1.6053e-7
MA0029.1	MA0029.1	0.711
MA0030.1	MA0030.1	0.406
MA0031.1	MA0031.1	0.69
MA0035.2	MA0035.2	0.0151
MA0038.1	MA0038.1	0.0061
MA0039.2	MA0039.2	0.996
MA0040.1	MA0040.1	0.172
MA0041.1	MA0041.1	0.0565
MA0042.1	MA0042.1	0.232
MA0043.1	MA0043.1	0.12
MA0046.1	MA0046.1	0.0305
MA0047.2	MA0047.2	0.673
MA0048.1	MA0048.1	0.129
MA0050.1	MA0050.1	0.194
MA0051.1	MA0051.1	0.827
MA0052.1	MA0052.1	0.00111
MA0055.1	MA0055.1	0.141
MA0057.1	MA0057.1	0.667
MA0058.1	MA0058.1	2.06296e-9
MA0059.1	MA0059.1	2.40665e-5
MA0060.1	MA0060.1	5.22804e-4
MA0061.1	MA0061.1	0.00358
MA0062.2	MA0062.2	1.82767e-11
MA0065.2	MA0065.2	0.27
MA0066.1	MA0066.1	0.743
MA0067.1	MA0067.1	0.00749
MA0068.1	MA0068.1	0.0164
MA0069.1	MA0069.1	0.556
MA0070.1	MA0070.1	0.109
MA0071.1	MA0071.1	0.622
MA0072.1	MA0072.1	0.691
MA0073.1	MA0073.1	0.568
MA0074.1	MA0074.1	0.806
MA0076.1	MA0076.1	3.25505e-9
MA0077.1	MA0077.1	0.458
MA0078.1	MA0078.1	0.243
MA0079.2	MA0079.2	0.244
MA0080.2	MA0080.2	0.00101
MA0081.1	MA0081.1	0.496
MA0083.1	MA0083.1	0.0984
MA0084.1	MA0084.1	0.426
MA0087.1	MA0087.1	0.878
MA0088.1	MA0088.1	0.02
MA0090.1	MA0090.1	0.442
MA0091.1	MA0091.1	0.0185
MA0092.1	MA0092.1	0.034
MA0093.1	MA0093.1	1.85723e-5
MA0099.2	MA0099.2	3.0302e-4
MA0100.1	MA0100.1	0.0755
MA0101.1	MA0101.1	0.105
MA0102.2	MA0102.2	0.0423
MA0103.1	MA0103.1	0.00571
MA0104.2	MA0104.2	4.50426e-5
MA0105.1	MA0105.1	0.0138
MA0106.1	MA0106.1	0.592
MA0107.1	MA0107.1	0.0214
MA0108.2	MA0108.2	0.692
MA0111.1	MA0111.1	0.697
MA0112.2	MA0112.2	0.00832
MA0113.1	MA0113.1	0.162
MA0114.1	MA0114.1	0.431
MA0115.1	MA0115.1	0.466
MA0116.1	MA0116.1	0.00525
MA0117.1	MA0117.1	0.527
MA0119.1	MA0119.1	0.582
MA0122.1	MA0122.1	0.569
MA0124.1	MA0124.1	0.958
MA0125.1	MA0125.1	0.16
MA0131.1	MA0131.1	0.132
MA0135.1	MA0135.1	0.129
MA0136.1	MA0136.1	0.399
MA0137.2	MA0137.2	0.641
MA0138.2	MA0138.2	0.052
MA0139.1	MA0139.1	0.271
MA0140.1	MA0140.1	0.0997
MA0141.1	MA0141.1	0.3
MA0142.1	MA0142.1	0.949
MA0143.1	MA0143.1	0.555
MA0144.1	MA0144.1	0.516
MA0145.1	MA0145.1	0.0524
MA0146.1	MA0146.1	0.529
MA0147.1	MA0147.1	5.77329e-5
MA0148.1	MA0148.1	0.538
MA0149.1	MA0149.1	0.328
MA0150.1	MA0150.1	0.0378
MA0152.1	MA0152.1	0.231
MA0153.1	MA0153.1	0.0927
MA0154.1	MA0154.1	0.0102
MA0155.1	MA0155.1	0.0523
MA0156.1	MA0156.1	0.0715
MA0157.1	MA0157.1	0.84
MA0159.1	MA0159.1	0.419
MA0160.1	MA0160.1	0.772
MA0162.1	MA0162.1	0.0115
MA0163.1	MA0163.1	0.215
MA0164.1	MA0164.1	0.919
MA0258.1	MA0258.1	0.0878
MA0259.1	MA0259.1	0.00806

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11281

Novel motif	Logo	P-value
1	1	0.973
10	10	0.818
100	100	0.679
101	101	0.821
102	102	0.136
103	103	0.731
104	104	0.981
105	105	0.0717
106	106	0.0213
107	107	0.0921
108	108	0.669
109	109	0.93
11	11	0.39
110	110	0.741
111	111	0.0425
112	112	0.58
113	113	0.058
114	114	0.0225
115	115	0.573
116	116	0.218
117	117	0.289
118	118	0.636
119	119	0.075
12	12	0.149
120	120	0.196
121	121	0.62
122	122	0.323
123	123	0.231
124	124	0.571
125	125	0.259
126	126	0.442
127	127	0.224
128	128	0.0199
129	129	0.539
13	13	0.639
130	130	0.591
131	131	0.142
132	132	0.412
133	133	0.123
134	134	0.763
135	135	0.533
136	136	0.0127
137	137	0.325
138	138	0.43
139	139	0.0223
14	14	0.515
140	140	0.0912
141	141	0.854
142	142	0.653
143	143	0.0614
144	144	0.614
145	145	0.655
146	146	0.5
147	147	0.821
148	148	0.879
149	149	0.453
15	15	0.239
150	150	0.311
151	151	0.39
152	152	0.611
153	153	0.592
154	154	0.596
155	155	0.349
156	156	0.524
157	157	0.777
158	158	0.704
159	159	0.0896
16	16	0.94
160	160	0.0458
161	161	0.0378
162	162	0.648
163	163	0.661
164	164	0.728
165	165	0.25
166	166	0.0613
167	167	0.912
168	168	0.445
169	169	0.206
17	17	0.136
18	18	0.57
19	19	0.0843
2	2	0.155
20	20	0.112
21	21	0.297
22	22	0.519
23	23	0.0721
24	24	0.545
25	25	0.764
26	26	0.936
27	27	0.193
28	28	0.649
29	29	0.683
3	3	0.478
30	30	0.21
31	31	0.51
32	32	1.38527e-4
33	33	0.976
34	34	0.219
35	35	0.957
36	36	0.558
37	37	0.939
38	38	0.569
39	39	0.38
4	4	0.688
40	40	0.0664
41	41	0.926
42	42	0.537
43	43	0.127
44	44	0.305
45	45	0.219
46	46	0.297
47	47	0.738
48	48	0.604
49	49	0.256
5	5	0.824
50	50	0.714
51	51	0.125
52	52	0.116
53	53	0.369
54	54	0.38
55	55	0.719
56	56	0.701
57	57	0.932
58	58	0.226
59	59	0.279
6	6	0.0487
60	60	0.167
61	61	0.709
62	62	0.0972
63	63	0.152
64	64	0.531
65	65	0.213
66	66	0.0641
67	67	0.576
68	68	0.00331
69	69	0.329
7	7	0.668
70	70	0.438
71	71	0.524
72	72	0.32
73	73	0.784
74	74	0.446
75	75	0.25
76	76	0.499
77	77	0.0293
78	78	0.246
79	79	0.0436
8	8	0.234
80	80	0.689
81	81	0.163
82	82	0.0256
83	83	0.0679
84	84	0.776
85	85	0.508
86	86	0.513
87	87	0.0756
88	88	0.408
89	89	0.122
9	9	0.281
90	90	0.806
91	91	0.0452
92	92	0.108
93	93	0.745
94	94	0.066
95	95	0.295
96	96	0.263
97	97	0.743
98	98	0.221
99	99	0.581

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11281

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100849 melanoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1909 (melanoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100849 (melanoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr1:158985493..158985535,+!p4@IFI16!2.43!400.51!IFI16;;chr22:38380543..38380569,-!p1@SOX10!2.41!257.80!SOX10;;chr3:69985734..69985749,+!p2@MITF!2.17!145.58!MITF;;chr2:223163706..223163730,-!p1@PAX3!1.84!67.48!PAX3;;chr1:158985553..158985574,+!p14@IFI16!1.74!53.53!IFI16;;chr1:158975744..158975769,+!p10@IFI16!1.71!50.04!IFI16;;chr6:10415276..10415341,-!p2@TFAP2A!1.63!50.35!TFAP2A;;chr1:158985457..158985468,+!p12@IFI16!1.58!36.70!IFI16;;chr3:69985792..69985803,+!p7@MITF!1.57!35.94!MITF;;chr20:50179368..50179392,-!p2@NFATC2!1.53!42.16!NFATC2;;chr1:158985469..158985489,+!p7@IFI16!1.53!38.82!IFI16;;chr15:42749722..42749739,-!p2@ZFP106!1.50!54.14!ZFP106;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.47!28.51!ZBED1;;chr11:125034640..125034655,+!p1@PKNOX2!1.42!25.33!PKNOX2;;chr17:41622925..41622976,-!p3@ETV4!1.40!35.64!ETV4;;chr10:111987079..111987115,+!p3@MXI1!1.37!30.78!MXI1;;chr6:391743..391759,+!p1@IRF4!1.36!21.69!IRF4;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.33!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.31!19.41!EN2;;chr1:158985536..158985545,+!p18@IFI16!1.31!19.41!IFI16;;chr7:27179814..27179840,-!p4@HOXA3!1.30!19.11!HOXA3;;chr9:73029219..73029289,-!p2@KLF9!1.29!55.20!KLF9;;chr8:22550982..22550999,-!p1@EGR3!1.26!48.22!EGR3;;chr6:10412392..10412409,-!p4@TFAP2A!1.25!19.11!TFAP2A;;chr17:59477233..59477263,+!p1@TBX2!1.24!50.50!TBX2;;chr1:25256756..25256774,-!p1@RUNX3!1.22!29.27!RUNX3;;chr13:46626764..46626775,-!p16@ZC3H13!1.22!15.62!ZC3H13;;chr11:120107344..120107351,+!p1@POU2F3!1.20!17.89!POU2F3;;chr2:172949484..172949522,+!p1@DLX1!1.20!14.86!DLX1;;chr7:27183291..27183324,-!p1@HOXA5!1.20!14.86!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!1.20!14.71!HOXA5;;chr1:63788229..63788250,+!p1@FOXD3!1.18!14.26!FOXD3;;chr12:66218598..66218645,+!p2@HMGA2!1.17!62.93!HMGA2;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.50!GATA4;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.19!TFAP2A;;chr20:50179584..50179611,-!p6@NFATC2!1.14!12.89!NFATC2;;chr2:176994408..176994492,+!p1@HOXD8!1.13!12.44!HOXD8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.11!11.83!HOXC5;;chr12:66218836..66218888,+!p1@HMGA2!1.08!102.67!HMGA2;;chr1:158969752..158969780,+!p6@IFI16!1.07!18.65!IFI16;;chr3:185826855..185826911,-!p1@ETV5!1.06!286.62!ETV5;;chr17:46688334..46688385,-!p1@HOXB7!1.04!14.41!HOXB7;;chr13:46626794..46626801,-!p17@ZC3H13!1.04!10.01!ZC3H13;;chr1:120190786..120190915,-!p1@ZNF697!1.03!71.88!ZNF697;;chr14:75988771..75988826,+!p1@BATF!1.01!12.28!BATF;;chr11:125034605..125034636,+!p2@PKNOX2!1.01!9.25!PKNOX2;;chr12:52445218..52445237,+!p1@NR4A1!1.00!116.31!NR4A1;;chr2:172967621..172967637,-!p1@DLX2!1.00!24.87!DLX2;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.95!HOXB6;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.65!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.98!121.02!PCBP4;;chr15:80696703..80696754,+!p1@ARNT2!0.98!11.53!ARNT2;;chr13:46626824..46626835,-!p8@ZC3H13!0.97!10.62!ZC3H13;;chr6:29648890..29648944,-!p1@ZFP57!0.96!8.19!ZFP57;;chr12:85673977..85674015,+!p1@ALX1!0.96!8.04!ALX1;;chr1:158985686..158985719,+!p15@IFI16!0.96!8.04!IFI16;;chr5:88178983..88179012,-!p1@MEF2C!0.95!63.24!MEF2C;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.89!HOXA3;;chr7:27179852..27179863,-!p10@HOXA3!0.94!7.73!HOXA3;;chr12:57914286..57914304,-!p1@DDIT3!0.90!265.84!DDIT3;;chr17:59477275..59477286,+!p3@TBX2!0.90!9.40!TBX2;;chr17:46703687..46703740,-!p1@HOXB9!0.89!6.82!HOXB9;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr22:22874610..22874616,-!p1@ZNF280A!0.88!6.67!ZNF280A;;chr11:16133391..16133439,-!p6@SOX6!0.88!6.67!SOX6;;chr21:34398234..34398250,+!p1@OLIG2!0.87!6.37!OLIG2;;chr2:172950227..172950249,+!p2@DLX1!0.86!6.22!DLX1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.58!RARG;;chr3:25470062..25470084,+!p4@RARB!0.85!6.07!RARB;;chr17:70117153..70117174,+!p1@SOX9!0.84!64.75!SOX9;;chr2:239148671..239148686,-!p1@HES6!0.84!22.90!HES6;;chr3:52001426..52001447,-!p3@PCBP4!0.84!17.74!PCBP4;;chr7:27135591..27135658,-!p1@HOXA1!0.84!11.83!HOXA1;;chr8:80679993..80680011,-!p1@HEY1!0.84!8.80!HEY1;;chr17:46622205..46622218,-!p3@HOXB2!0.84!6.98!HOXB2;;chr2:85987839..85987846,+!p20@ATOH8!0.84!5.91!ATOH8;;chr9:73028598..73028617,-!p5@KLF9!0.83!10.31!KLF9;;chr17:46703212..46703238,-!p2@HOXB9!0.83!5.76!HOXB9;;chr2:145277640..145277771,-!p1@ZEB2!0.82!80.83!ZEB2;;chr6:126102292..126102329,+!p3@NCOA7!0.82!19.71!NCOA7;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.07!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.82!6.98!ETV4;;chr16:67198633..67198671,+!p1@HSF4!0.82!5.61!HSF4;;chr12:54402745..54402788,+!p1@HOXC8!0.82!5.61!HOXC8;;chr9:73028814..73028895,-!p1@KLF9!0.81!57.93!KLF9;;chr17:41623692..41623715,-!p1@ETV4!0.81!25.17!ETV4;;chr5:321810..321877,+!p1@AHRR!0.81!18.50!AHRR;;chr21:30671690..30671762,+!p2@BACH1!0.80!19.26!BACH1;;chr12:66218212..66218244,+!p5@HMGA2!0.80!8.04!HMGA2;;chr12:54447637..54447659,+!p4@HOXC4!0.80!5.31!HOXC4;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.28!HOXB7;;chr11:16629261..16629284,-!p1@SOX6!0.79!5.16!SOX6;;chr12: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:52719912..52719995,-!p1@PBRM1!0.19!22.60!PBRM1;;chr17:47492236..47492251,-!p1@PHB!0.19!19.11!PHB;;chr3:88108381..88108450,+!p1@ENST00000473136!0.19!14.56!ZNF654;;chr15:96873892..96873919,+!p4@NR2F2!0.19!13.04!NR2F2;;chr19:40562072..40562143,-!p1@ZNF780B!0.19!12.13!ZNF780B;;chr3:44690211..44690267,+!p1@ZNF35!0.19!11.53!ZNF35;;chr8:37553261..37553282,+!p2@ZNF703!0.19!10.16!ZNF703;;chr14:55493763..55493824,-!p1@WDHD1!0.19!10.01!WDHD1;;chr15:67357924..67357952,+!p2@SMAD3!0.19!8.64!SMAD3;;chr14:74226961..74227020,-!p1@C14orf43!0.19!8.49!C14orf43;;chr9:32552577..32552627,-!p1@TOPORS!0.19!6.52!TOPORS;;chr16:73092898..73092931,-!p1@ZFHX3!0.19!4.55!ZFHX3;;chr2:25564750..25564807,-!p1@DNMT3A!0.19!4.55!DNMT3A;;chr19:58331073..58331084,+!p3@ZNF587!0.19!4.55!ZNF587;;chrX:46404811..46404869,-!p1@ZNF674!0.19!4.40!ZNF674;;chr9:3525867..3525902,-!p3@RFX3!0.19!4.09!RFX3;;chr7:99156314..99156372,+!p4@ZNF655!0.19!3.94!ZNF655;;chr19:19516507..19516539,+!p7@GATAD2A!0.19!3.34!GATAD2A;;chr19:37958285..37958317,-!p3@ZNF569!0.19!2.88!ZNF569;;chr20:49547731..49547753,-!p4@ADNP!0.19!2.73!ADNP;;chr19:58071166..58071189,-!p2@ZNF550!0.19!2.58!ZNF550;;chr2:46524474..46524491,+!p4@EPAS1!0.19!2.58!EPAS1;;chr11:6947647..6947698,+!p2@ZNF215!0.19!1.06!ZNF215;;chr20:49547674..49547685,-!p7@ADNP!0.19!1.06!ADNP;;chr19:38720294..38720348,-!p1@DPF1!0.19!0.91!DPF1;;chrX:24167800..24167811,+!p3@ZFX!0.19!0.91!ZFX;;chr8:72756023..72756055,-!p6@MSC!0.19!0.91!MSC;;chr6:45296048..45296082,+!p1@RUNX2!0.19!0.76!RUNX2;;chr2:231084820..231084836,-!p5@SP110!0.19!0.76!SP110;;chr1:8938766..8938774,-!p2@ENO1!0.18!94.17!ENO1;;chr4:41992513..41992561,+!p1@SLC30A9!0.18!88.26!SLC30A9;;chr9:33290491..33290564,+!p1@NFX1!0.18!50.65!NFX1;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.18!47.77!ZKSCAN1;;chr1:212782094..212782109,+!p1@ATF3!0.18!37.15!ATF3;;chr4:185395672..185395710,-!p1@IRF2!0.18!36.24!IRF2;;chr15:100106155..100106243,+!p1@MEF2A!0.18!35.79!MEF2A;;chr14:89029366..89029425,+!p1@ZC3H14!0.18!31.54!ZC3H14;;chr2:48541789..48541874,+!p1@FOXN2!0.18!30.63!FOXN2;;chr20:30795511..30795562,-!p1@PLAGL2!0.18!24.57!PLAGL2;;chr1:78444778..78444800,-!p2@FUBP1!0.18!23.20!FUBP1;;chr3:126194707..126194798,-!p1@ZXDC!0.18!21.99!ZXDC;;chr19:58125580..58125639,+!p1@ZNF134!0.18!20.93!ZNF134;;chr5:132299210..132299228,-!p3@AFF4!0.18!15.32!AFF4;;chr7:28220198..28220269,-!p2@JAZF1!0.18!11.68!JAZF1;;chr12:115121962..115121987,-!p1@TBX3!0.18!10.77!TBX3;;chr1:167190091..167190156,+!p1@POU2F1!0.18!10.16!POU2F1;;chr19:9546177..9546224,-!p1@ZNF266!0.18!9.10!ZNF266;;chr19:53898380..53898422,+!p1@ZNF765!0.18!7.73!ZNF765;;chr19:58694421..58694485,+!p1@ZNF274!0.18!6.52!ZNF274;;chr19:58258202..58258226,+!p3@ZNF776!0.18!5.76!ZNF776;;chrX:83757450..83757485,-!p1@HDX!0.18!5.16!HDX;;chr11:62369352..62369373,-!p5@MTA2!0.18!4.55!MTA2;;chr8:37963407..37963454,+!p2@ASH2L!0.18!3.34!ASH2L;;chr8:145669791..145669834,-!p1@TONSL!0.18!3.18!TONSL;;chr16:30538079..30538124,-!p3@ZNF768!0.18!3.18!ZNF768;;chr19:36545291..36545314,-!p2@THAP8!0.18!2.58!THAP8;;chr7:102985288..102985310,-!p2@DNAJC2!0.18!2.43!DNAJC2;;chr20:25677443..25677464,-!p2@ZNF337!0.18!2.43!ZNF337;;chr22:38598057..38598071,+!p3@MAFF!0.18!2.43!MAFF;;chr6:7108855..7108903,+!p5@RREB1!0.18!2.27!RREB1;;chr12:57400227..57400245,-!p2@ZBTB39!0.18!1.82!ZBTB39;;chr15:67358146..67358157,+!p7@SMAD3!0.18!1.52!SMAD3;;chr5:132299037..132299048,-!p7@AFF4!0.18!1.52!AFF4;;chr11:3400442..3400453,-!p2@ZNF195!0.18!1.36!ZNF195;;chr12:50479101..50479108,+!p3@SMARCD1!0.18!1.36!SMARCD1;;chr9:2015275..2015287,+!p8@SMARCA2!0.18!1.36!SMARCA2;;chrX:106960249..106960260,-!p5@TSC22D3!0.18!1.36!TSC22D3;;chr22:38598042..38598052,+!p4@MAFF!0.18!1.36!MAFF;;
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=FF:0100849
 |fonse_cell_line_closure=FF:0100849

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FF:10514-107E1: Difference between revisions

From FANTOM5_SSTAR

Revision as of 19:14, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0