FF:10728-110A8: Difference between revisions

Revision as of 19:45, 9 July 2012

Name:	neuroepithelioma cell line:SK-N-MC
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	NA
sex	female
age	14
cell type	unclassifiable
cell line	SK-N-MC
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.446
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-9.922689e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0591
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0217
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0478
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.233
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0242
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.56
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11853

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00894
MA0003.1	MA0003.1	0.34
MA0004.1	MA0004.1	0.00807
MA0006.1	MA0006.1	0.0364
MA0007.1	MA0007.1	0.634
MA0009.1	MA0009.1	0.076
MA0014.1	MA0014.1	0.476
MA0017.1	MA0017.1	0.0033
MA0018.2	MA0018.2	0.0271
MA0019.1	MA0019.1	0.802
MA0024.1	MA0024.1	2.3308e-8
MA0025.1	MA0025.1	0.742
MA0027.1	MA0027.1	0.231
MA0028.1	MA0028.1	0.629
MA0029.1	MA0029.1	0.141
MA0030.1	MA0030.1	0.787
MA0031.1	MA0031.1	0.575
MA0035.2	MA0035.2	0.279
MA0038.1	MA0038.1	0.0228
MA0039.2	MA0039.2	0.394
MA0040.1	MA0040.1	0.528
MA0041.1	MA0041.1	0.322
MA0042.1	MA0042.1	0.973
MA0043.1	MA0043.1	0.149
MA0046.1	MA0046.1	0.444
MA0047.2	MA0047.2	0.698
MA0048.1	MA0048.1	0.538
MA0050.1	MA0050.1	8.06653e-17
MA0051.1	MA0051.1	1.09648e-5
MA0052.1	MA0052.1	0.265
MA0055.1	MA0055.1	0.0982
MA0057.1	MA0057.1	0.904
MA0058.1	MA0058.1	0.0115
MA0059.1	MA0059.1	0.055
MA0060.1	MA0060.1	1.04766e-8
MA0061.1	MA0061.1	0.181
MA0062.2	MA0062.2	0.604
MA0065.2	MA0065.2	0.0274
MA0066.1	MA0066.1	0.0938
MA0067.1	MA0067.1	0.296
MA0068.1	MA0068.1	8.8273e-4
MA0069.1	MA0069.1	0.168
MA0070.1	MA0070.1	0.206
MA0071.1	MA0071.1	0.963
MA0072.1	MA0072.1	0.301
MA0073.1	MA0073.1	0.681
MA0074.1	MA0074.1	0.348
MA0076.1	MA0076.1	0.287
MA0077.1	MA0077.1	0.381
MA0078.1	MA0078.1	0.599
MA0079.2	MA0079.2	0.558
MA0080.2	MA0080.2	5.61521e-10
MA0081.1	MA0081.1	0.0419
MA0083.1	MA0083.1	0.0565
MA0084.1	MA0084.1	0.0404
MA0087.1	MA0087.1	0.768
MA0088.1	MA0088.1	0.303
MA0090.1	MA0090.1	0.653
MA0091.1	MA0091.1	0.395
MA0092.1	MA0092.1	0.249
MA0093.1	MA0093.1	0.00385
MA0099.2	MA0099.2	2.58416e-9
MA0100.1	MA0100.1	0.531
MA0101.1	MA0101.1	0.5
MA0102.2	MA0102.2	0.0771
MA0103.1	MA0103.1	0.205
MA0104.2	MA0104.2	0.0014
MA0105.1	MA0105.1	0.252
MA0106.1	MA0106.1	0.233
MA0107.1	MA0107.1	0.401
MA0108.2	MA0108.2	0.907
MA0111.1	MA0111.1	0.907
MA0112.2	MA0112.2	2.85935e-4
MA0113.1	MA0113.1	0.34
MA0114.1	MA0114.1	0.0294
MA0115.1	MA0115.1	0.368
MA0116.1	MA0116.1	0.208
MA0117.1	MA0117.1	0.707
MA0119.1	MA0119.1	0.717
MA0122.1	MA0122.1	0.712
MA0124.1	MA0124.1	0.829
MA0125.1	MA0125.1	0.651
MA0131.1	MA0131.1	0.642
MA0135.1	MA0135.1	0.992
MA0136.1	MA0136.1	9.90891e-6
MA0137.2	MA0137.2	0.955
MA0138.2	MA0138.2	0.367
MA0139.1	MA0139.1	0.626
MA0140.1	MA0140.1	0.88
MA0141.1	MA0141.1	0.407
MA0142.1	MA0142.1	0.171
MA0143.1	MA0143.1	0.251
MA0144.1	MA0144.1	0.141
MA0145.1	MA0145.1	0.00322
MA0146.1	MA0146.1	0.311
MA0147.1	MA0147.1	0.00172
MA0148.1	MA0148.1	0.766
MA0149.1	MA0149.1	0.00147
MA0150.1	MA0150.1	0.00628
MA0152.1	MA0152.1	0.386
MA0153.1	MA0153.1	0.863
MA0154.1	MA0154.1	0.252
MA0155.1	MA0155.1	0.635
MA0156.1	MA0156.1	0.0793
MA0157.1	MA0157.1	0.369
MA0159.1	MA0159.1	2.29328e-4
MA0160.1	MA0160.1	0.313
MA0162.1	MA0162.1	0.0783
MA0163.1	MA0163.1	0.295
MA0164.1	MA0164.1	0.975
MA0258.1	MA0258.1	0.0476
MA0259.1	MA0259.1	0.0115

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11853

Novel motif	Logo	P-value
1	1	0.664
10	10	0.267
100	100	0.82
101	101	0.768
102	102	0.74
103	103	0.0746
104	104	0.874
105	105	0.688
106	106	8.98929e-4
107	107	0.0147
108	108	0.478
109	109	0.0822
11	11	0.215
110	110	0.778
111	111	0.302
112	112	0.00518
113	113	0.445
114	114	0.00562
115	115	0.0897
116	116	0.34
117	117	0.614
118	118	0.283
119	119	0.146
12	12	0.526
120	120	0.744
121	121	0.295
122	122	0.386
123	123	0.416
124	124	0.589
125	125	0.588
126	126	0.443
127	127	0.503
128	128	0.129
129	129	0.705
13	13	0.781
130	130	0.019
131	131	0.28
132	132	0.488
133	133	0.285
134	134	0.451
135	135	0.0895
136	136	0.502
137	137	0.191
138	138	0.634
139	139	0.452
14	14	0.27
140	140	0.0312
141	141	0.164
142	142	0.995
143	143	0.335
144	144	0.389
145	145	0.0963
146	146	0.919
147	147	0.955
148	148	0.0678
149	149	0.0483
15	15	0.824
150	150	0.286
151	151	0.169
152	152	0.0163
153	153	0.923
154	154	0.891
155	155	0.222
156	156	0.892
157	157	0.259
158	158	0.374
159	159	0.282
16	16	0.15
160	160	0.441
161	161	0.745
162	162	0.472
163	163	0.924
164	164	0.28
165	165	0.918
166	166	0.313
167	167	0.735
168	168	0.328
169	169	0.0071
17	17	0.523
18	18	0.664
19	19	0.0121
2	2	0.123
20	20	0.811
21	21	0.0911
22	22	0.238
23	23	0.144
24	24	0.853
25	25	0.407
26	26	0.203
27	27	0.326
28	28	0.713
29	29	0.444
3	3	0.277
30	30	0.671
31	31	0.308
32	32	8.29642e-5
33	33	0.642
34	34	0.818
35	35	0.749
36	36	0.464
37	37	0.0313
38	38	0.472
39	39	0.237
4	4	0.2
40	40	0.439
41	41	0.353
42	42	0.468
43	43	0.32
44	44	0.133
45	45	0.428
46	46	0.173
47	47	0.457
48	48	0.454
49	49	0.716
5	5	0.309
50	50	0.265
51	51	0.577
52	52	0.144
53	53	0.55
54	54	0.506
55	55	0.484
56	56	0.623
57	57	0.411
58	58	0.481
59	59	0.0546
6	6	0.7
60	60	0.0644
61	61	0.468
62	62	0.321
63	63	0.352
64	64	0.978
65	65	0.356
66	66	0.222
67	67	0.283
68	68	0.62
69	69	0.522
7	7	0.979
70	70	0.00694
71	71	0.0492
72	72	0.521
73	73	0.00657
74	74	0.962
75	75	0.241
76	76	0.963
77	77	0.0282
78	78	0.456
79	79	0.022
8	8	0.707
80	80	0.5
81	81	0.653
82	82	0.159
83	83	0.167
84	84	0.501
85	85	1.7935e-4
86	86	0.4
87	87	0.168
88	88	0.622
89	89	0.105
9	9	0.381
90	90	0.952
91	91	0.171
92	92	0.137
93	93	0.871
94	94	0.455
95	95	0.156
96	96	0.771
97	97	0.336
98	98	0.765
99	99	0.513

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11853

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:962 neurofibroma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102914 SK-N-MC cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000333 (migratory neural crest cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000219 (motile cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
1192 (peripheral nervous system neoplasm)
2994 (germ cell cancer)
1115 (sarcoma)
169 (neuroendocrine tumor)
3193 (peripheral nerve sheath neoplasm)
962 (neurofibroma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000013 (sympathetic nervous system)
0003714 (neural tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0002410 (autonomic nervous system)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0100932 (neuroblastoma cell line sample)
0102912 (neuroepithelioma cell line sample)
0104785 (Ewing's sarcoma family tumor cell line sample)
0102914 (SK-N-MC cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr6:50786591..50786614,+!p1@TFAP2B!2.58!381.55!TFAP2B;;chr7:19157248..19157268,-!p1@TWIST1!2.31!537.98!TWIST1;;chr6:50786547..50786564,+!p3@TFAP2B!2.11!127.37!TFAP2B;;chr6:50786571..50786590,+!p2@TFAP2B!2.08!118.43!TFAP2B;;chr20:39317868..39317884,-!p1@MAFB!2.07!1300.53!MAFB;;chr6:50786509..50786527,+!p5@TFAP2B!1.95!88.27!TFAP2B;;chr20:21494684..21494708,-!p1@NKX2-2!1.93!83.80!NKX2-2;;chr1:197886461..197886558,+!p1@LHX9!1.93!83.24!LHX9;;chr19:31840130..31840160,-!p2@TSHZ3!1.85!106.14!TSHZ3;;chr1:25256756..25256774,-!p1@RUNX3!1.77!106.70!RUNX3;;chr9:132427883..132427951,+!p2@PRRX2!1.77!58.10!PRRX2;;chr13:100634031..100634045,+!p1@ZIC2!1.62!40.78!ZIC2;;chr2:5832508..5832524,+!p1@SOX11!1.60!38.55!SOX11;;chr10:131762504..131762555,-!p1@EBF3!1.58!36.87!EBF3;;chr6:99282438..99282457,+!p2@POU3F2!1.58!36.87!POU3F2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.57!35.75!ZBED1;;chr8:37553261..37553282,+!p2@ZNF703!1.56!255.30!ZNF703;;chr3:181429704..181429722,+!p1@SOX2!1.52!31.84!SOX2;;chr6:50786057..50786069,+!p9@TFAP2B!1.49!29.61!TFAP2B;;chr4:174451370..174451387,-!p1@HAND2!1.46!27.93!HAND2;;chr6:19837592..19837621,+!p1@ID4!1.44!157.54!ID4;;chrX:30327504..30327509,-!p1@NR0B1!1.44!26.81!NR0B1;;chr19:50432453..50432468,+!p1@ATF5!1.43!1383.20!ATF5;;chr20:42543441..42543497,+!p1@TOX2!1.41!107.26!TOX2;;chr3:128212033..128212051,-!p1@GATA2!1.40!24.02!GATA2;;chr2:239148671..239148686,-!p1@HES6!1.39!84.91!HES6;;chr8:65492915..65492932,+!p1@BHLHE22!1.39!23.46!BHLHE22;;chr2:223163706..223163730,-!p1@PAX3!1.37!22.35!PAX3;;chr6:10415276..10415341,-!p2@TFAP2A!1.36!26.81!TFAP2A;;chr6:99282475..99282501,+!p1@POU3F2!1.36!21.79!POU3F2;;chr8:106330656..106330684,+!p1@ZFPM2!1.34!53.63!ZFPM2;;chr2:66662281..66662308,+!p1@MEIS1!1.32!68.15!MEIS1;;chr17:46806419..46806438,-!p4@HOXB13!1.31!19.55!HOXB13;;chr20:42295745..42295765,+!p1@MYBL2!1.29!290.50!MYBL2;;chr8:86089417..86089440,+!p2@E2F5!1.29!36.31!E2F5;;chr7:121944689..121944705,-!p2@FEZF1!1.28!17.88!FEZF1;;chr15:57511609..57511651,+!p2@TCF12!1.26!29.05!TCF12;;chr19:49864746..49864780,-!p2@TEAD2!1.26!23.46!TEAD2;;chr14:76842457..76842494,+!p1@ESRRB!1.26!17.32!ESRRB;;chr17:48072574..48072597,-!p1@DLX3!1.26!17.32!DLX3;;chr6:50789717..50789729,+!p4@TFAP2B!1.26!17.32!TFAP2B;;chr7:121944796..121944814,-!p1@FEZF1!1.25!16.76!FEZF1;;chr17:46806035..46806059,-!p2@HOXB13!1.25!16.76!HOXB13;;chr13:100623375..100623425,-!p1@ZIC5!1.25!16.76!ZIC5;;chrX:25034067..25034088,-!p1@ARX!1.25!16.76!ARX;;chr3:128206762..128206781,-!p2@GATA2!1.24!99.44!GATA2;;chr8:37553292..37553317,+!p1@ZNF703!1.23!368.71!ZNF703;;chr20:42543506..42543549,+!p2@TOX2!1.23!38.55!TOX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.23!26.26!TFAP2A;;chr9:132427972..132428056,+!p1@PRRX2!1.23!20.67!PRRX2;;chr7:19157043..19157088,-!p2@TWIST1!1.22!38.55!TWIST1;;chr22:19748231..19748317,+!p1@TBX1!1.22!15.64!TBX1;;chr6:50786479..50786490,+!p6@TFAP2B!1.21!15.08!TFAP2B;;chr1:110613276..110613299,-!p2@ALX3!1.21!15.08!ALX3;;chr1:33721873..33721898,+!p3@ZNF362!1.19!27.93!ZNF362;;chr7:113726357..113726443,+!p1@FOXP2!1.19!25.14!FOXP2;;chr6:50786529..50786540,+!p8@TFAP2B!1.18!13.97!TFAP2B;;chr9:1050331..1050363,+!p1@DMRT2!1.18!13.97!DMRT2;;chr1:18957333..18957375,+!p1@PAX7!1.18!13.97!PAX7;;chr20:21494654..21494678,-!p2@NKX2-2!1.18!13.97!NKX2-2;;chr11:16629369..16629392,-!p5@SOX6!1.18!13.97!SOX6;;chr12:54785074..54785122,-!p2@ZNF385A!1.17!21.23!ZNF385A;;chr6:50786631..50786635,+!p11@TFAP2B!1.16!13.41!TFAP2B;;chr17:46806067..46806097,-!p1@HOXB13!1.16!13.41!HOXB13;;chr2:176969097..176969109,+!p3@HOXD11!1.16!13.41!HOXD11;;chr2:5832493..5832507,+!p2@SOX11!1.16!13.41!SOX11;;chr14:99738138..99738163,-!p1@BCL11B!1.14!12.85!BCL11B;;chr20:21378152..21378169,-!p1@NKX2-4!1.14!12.85!NKX2-4;;chr11:61520075..61520136,+!p1@C11orf9!1.13!26.26!C11orf9;;chr8:106330696..106330719,+!p2@ZFPM2!1.12!15.64!ZFPM2;;chr13:100634130..100634143,+!p3@ZIC2!1.12!12.29!ZIC2;;chr13:79177703..79177729,-!p2@POU4F1!1.12!12.29!POU4F1;;chr4:4861385..4861398,+!p1@MSX1!1.10!34.64!MSX1;;chr1:38512457..38512474,-!p1@POU3F1!1.10!12.85!POU3F1;;chr18:56940611..56940660,-!p1@RAX!1.10!11.73!RAX;;chr6:34205372..34205412,+!p5@HMGA1!1.09!56.98!HMGA1;;chr8:77593474..77593612,+!p1@ZFHX4!1.09!48.04!ZFHX4;;chr13:100634004..100634025,+!p2@ZIC2!1.09!11.17!ZIC2;;chr1:18958059..18958081,+!p6@PAX7!1.09!11.17!PAX7;;chr11:120107344..120107351,+!p1@POU2F3!1.08!13.41!POU2F3;;chr20:32274179..32274213,-!p1@E2F1!1.07!72.07!E2F1;;chr8:145669791..145669834,-!p1@TONSL!1.06!30.73!TONSL;;chr5:2751762..2751784,-!p1@IRX2!1.06!10.61!IRX2;;chr11:16629630..16629643,-!p20@SOX6!1.06!10.61!SOX6;;chr11:31832807..31832823,-!p4@PAX6!1.06!10.61!PAX6;;chr20:42295713..42295738,+!p2@MYBL2!1.05!61.45!MYBL2;;chr7:149470641..149470694,-!p1@ZNF467!1.04!45.81!ZNF467;;chr17:38465413..38465438,+!p5@RARA!1.04!16.20!RARA;;chr2:176969179..176969226,+!p2@HOXD11!1.04!10.06!HOXD11;;chr1:110613238..110613272,-!p1@ALX3!1.04!10.06!ALX3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.03!21.23!SOHLH2;;chrX:84498989..84499003,+!p1@ZNF711!1.03!13.41!ZNF711;;chr1:18958008..18958023,+!p2@PAX7!1.02!9.50!PAX7;;chr2:66662249..66662267,+!p2@MEIS1!1.00!35.19!MEIS1;;chr3:181429741..181429767,+!p2@SOX2!1.00!8.94!SOX2;;chr13:79177674..79177701,-!p1@POU4F1!1.00!8.94!POU4F1;;chr17:38465441..38465481,+!p6@RARA!0.98!10.61!RARA;;chr7:148581360..148581425,-!p1@EZH2!0.97!42.46!EZH2;;chr19:31840438..31840470,-!p3@TSHZ3!0.97!10.61!TSHZ3;;chr18:56940663..56940691,-!p2@RAX!0.97!8.38!RAX;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.38!TFAP2A;;chr7:19156632..19156652,-!p3@TWIST1!0.97!8.38!TWIST1;;chr20:21494602..21494622,-!p3@NKX2-2!0.97!8.38!NKX2-2;;chr2:145277640..145277771,-!p1@ZEB2!0.95!110.05!ZEB2;;chr19:31840168..31840186,-!p6@TSHZ3!0.95!7.82!TSHZ3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.95!7.82!HOXC5;;chr19:46800289..46800327,+!p2@HIF3A!0.95!7.82!HIF3A;;chr3:183415558..183415649,+!p1@YEATS2!0.94!214.52!YEATS2;;chr19:31840313..31840380,-!p1@TSHZ3!0.94!20.11!TSHZ3;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.94!TFAP2A;;chr17:42297028..42297056,-!p3@UBTF!0.93!31.84!UBTF;;chr1:40915725..40915808,+!p1@ZNF643!0.93!22.90!ZNF643;;chr2:8822176..8822196,+!p1@ID2!0.92!1068.69!ID2;;chr6:20402102..20402152,+!p1@E2F3!0.92!31.28!E2F3;;chr3:141105705..141105770,+!p4@ZBTB38!0.92!8.94!ZBTB38;;chr2:176969228..176969260,+!p1@HOXD11!0.92!7.26!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!0.92!7.26!HOXD8;;chr2:66662510..66662521,+!p6@MEIS1!0.92!7.26!MEIS1;;chr2:66662797..66662818,+!p10@MEIS1!0.92!7.26!MEIS1;;chr1:18957605..18957623,+!p3@PAX7!0.92!7.26!PAX7;;chr8:11561684..11561751,+!p1@GATA4!0.92!7.26!GATA4;;chr12:85673977..85674015,+!p1@ALX1!0.92!7.26!ALX1;;chr11:8102846..8102892,+!p1@TUB!0.91!10.06!TUB;;chr17:42297092..42297112,-!p11@UBTF!0.90!11.17!UBTF;;chr14:75745523..75745537,+!p1@FOS!0.89!855.84!FOS;;chr16:29817841..29817865,+!p1@MAZ!0.89!153.07!MAZ;;chr12:50479109..50479146,+!p2@SMARCD1!0.89!120.67!SMARCD1;;chr10:118897911..118897974,-!p1@VAX1!0.89!6.70!VAX1;;chr12:54366894..54366922,+!p2@HOXC11!0.89!6.70!HOXC11;;chr12:54366949..54366973,+!p3@HOXC11!0.89!6.70!HOXC11;;chr12:54366975..54367001,+!p1@HOXC11!0.89!6.70!HOXC11;;chr14:99737850..99737852,-!p3@BCL11B!0.89!6.70!BCL11B;;chr2:176957443..176957457,+!p1@HOXD13!0.89!6.70!HOXD13;;chr6:50786414..50786426,+!p7@TFAP2B!0.89!6.70!TFAP2B;;chr6:7107999..7108031,+!p2@RREB1!0.87!35.75!RREB1;;chr5:321810..321877,+!p1@AHRR!0.87!21.23!AHRR;;chr19:49865646..49865718,-!p1@TEAD2!0.86!56.42!TEAD2;;chr1:23857698..23857733,-!p1@E2F2!0.86!11.73!E2F2;;chr2:25475120..25475176,-!p2@DNMT3A!0.85!8.38!DNMT3A;;chr17:46806016..46806029,-!p5@HOXB13!0.85!6.15!HOXB13;;chr18:45935720..45935772,-!p1@ZBTB7C!0.85!6.15!ZBTB7C;;chr11:16629650..16629667,-!p22@SOX6!0.85!6.15!SOX6;;chr11:31832862..31832884,-!p2@PAX6!0.85!6.15!PAX6;;chr13:37494248..37494260,-!p3@SMAD9!0.85!6.15!SMAD9;;chr13:37494275..37494304,-!p2@SMAD9!0.85!6.15!SMAD9;;chr1:18957627..18957640,+!p4@PAX7!0.85!6.15!PAX7;;chr20:21378129..21378142,-!p2@NKX2-4!0.85!6.15!NKX2-4;;chr20:56100179..56100208,-!p1@CTCFL!0.85!6.15!CTCFL;;chr19:11071685..11071798,+!p1@SMARCA4!0.84!180.44!SMARCA4;;chr19:1592714..1592762,-!p1@MBD3!0.84!47.48!MBD3;;chr4:57774042..57774114,+!p1@REST!0.83!151.39!REST;;chr18:77155922..77155939,+!p1@NFATC1!0.83!16.76!NFATC1;;chr18:56530692..56530723,+!p2@ZNF532!0.83!13.97!ZNF532;;chrX:131623932..131623964,-!p7@MBNL3!0.83!8.38!MBNL3;;chr8:128748308..128748324,+!p2@MYC!0.82!167.59!MYC;;chr6:10412576..10412599,-!p5@TFAP2A!0.82!5.59!TFAP2A;;chr17:48046543..48046575,+!p2@DLX4!0.82!5.59!DLX4;;chr2:66662396..66662407,+!p4@MEIS1!0.82!5.59!MEIS1;;chr12:54348655..54348693,+!p1@HOXC12!0.82!5.59!HOXC12;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.59!HOXC9;;chrX:129402866..129402880,-!p1@ZNF280C!0.81!34.08!ZNF280C;;chr14:21994449..21994524,-!p2@SALL2!0.80!16.76!SALL2;;chr2:172967621..172967637,-!p1@DLX2!0.80!15.08!DLX2;;chr3:33482052..33482116,-!p2@UBP1!0.80!8.38!UBP1;;chr12:115121962..115121987,-!p1@TBX3!0.79!47.48!TBX3;;chr15:85291544..85291598,+!p2@ZNF592!0.79!34.64!ZNF592;;chr9:14314131..14314147,-!p2@NFIB!0.79!31.28!NFIB;;chr14:21994337..21994442,-!p1@SALL2!0.79!15.08!SALL2;;chr1:61548069..61548102,+!p3@NFIA!0.79!13.41!NFIA;;chr2:71127699..71127744,+!p1@VAX2!0.79!11.17!VAX2;;chr1:41827095..41827155,+!p1@FOXO6!0.79!7.26!FOXO6;;chr8:37963028..37963070,+!p1@ASH2L!0.78!88.82!ASH2L;;chr8:86089369..86089408,+!p1@E2F5!0.78!14.52!E2F5;;chr5:150284532..150284549,-!p1@ZNF300!0.78!11.17!ZNF300;;chr8:65492520..65492554,+!p3@BHLHE22!0.78!5.03!BHLHE22;;chr2:176969124..176969155,+!p5@HOXD11!0.78!5.03!HOXD11;;chr4:111544219..111544240,-!p1@PITX2!0.78!5.03!PITX2;;chr17:48045917..48045977,+!p1@DLX4!0.78!5.03!DLX4;;chr17:48046642..48046667,+!p3@DLX4!0.78!5.03!DLX4;;chr5:174151553..174151610,+!p1@MSX2!0.76!8.38!MSX2;;chr16:29817789..29817838,+!p2@MAZ!0.75!69.83!MAZ;;chr1:14026671..14026705,+!p2@PRDM2!0.75!30.73!PRDM2;;chr5:132299339..132299359,-!p4@AFF4!0.75!24.02!AFF4;;chr19:1652555..1652568,-!p2@TCF3!0.75!20.67!TCF3;;chr5:134369905..134369972,-!p1@PITX1!0.74!7.26!P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SMARCA2!0.28!20.67!SMARCA2;;chr1:151032860..151032918,+!p1@MLLT11!0.28!20.11!MLLT11;;chr14:90085458..90085557,-!p1@FOXN3!0.28!17.32!FOXN3;;chr14:64970494..64970578,-!p1@ZBTB25!0.28!16.76!ZBTB25;;chr18:53255415..53255491,-!p1@TCF4!0.28!13.97!TCF4;;chr9:125667518..125667588,-!p1@RC3H2!0.28!10.61!RC3H2;;chr1:151431647..151431669,-!p2@POGZ!0.28!7.82!POGZ;;chr19:2944907..2944981,-!p1@ZNF77!0.28!6.70!ZNF77;;chr18:74534479..74534551,+!p1@ZNF236!0.28!4.47!ZNF236;;chr19:47615426..47615439,-!p5@ZC3H4!0.28!3.35!ZC3H4;;chr19:52408285..52408310,-!p3@ZNF649!0.28!3.35!ZNF649;;chr3:14989050..14989069,+!p2@NR2C2!0.28!3.35!NR2C2;;chr16:31085058..31085078,-!p2@ZNF668!0.28!2.79!ZNF668;;chr5:76383133..76383186,-!p2@ZBED3!0.28!2.79!ZBED3;;chr15:66994615..66994630,+!p3@SMAD6!0.28!1.68!SMAD6;;chr17:42297226..42297246,-!p14@UBTF!0.28!1.68!UBTF;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.28!1.68!ZNF497;;chr20:48807648..48807671,+!p9@CEBPB!0.28!1.68!CEBPB;;chr5:43121586..43121601,+!p10@ZNF131!0.28!1.12!ZNF131;;chr7:1577111..1577132,+!p4@MAFK!0.28!1.12!MAFK;;chr8:41909982..41910009,-!p2@KAT6A!0.28!1.12!KAT6A;;chr15:42783229..42783234,-!p8@ZFP106!0.28!1.12!ZFP106;;chr12:3068957..3068978,+!p6@TEAD4!0.28!1.12!TEAD4;;chr2:70314601..70314622,+!p1@PCBP1!0.27!389.93!PCBP1;;chr22:24129138..24129201,+!p1@SMARCB1!0.27!84.36!SMARCB1;;chr11:118307179..118307223,+!p1@MLL!0.27!51.40!MLL;;chr17:73780879..73780963,+!p1@UNK!0.27!27.93!UNK;;chr6:32157947..32157992,-!p1@PBX2!0.27!27.93!PBX2;;chr22:21356016..21356105,-!p1@THAP7!0.27!26.26!THAP7;;chr11:64073022..64073056,+!p1@ESRRA!0.27!19.55!ESRRA;;chr1:202777592..202777616,-!p2@KDM5B!0.27!17.88!KDM5B;;chr1:247095236..247095283,-!p2@AHCTF1!0.27!17.32!AHCTF1;;chr17:40897043..40897087,-!p1@EZH1!0.27!14.52!EZH1;;chr19:57901208..57901280,+!p1@ZNF548!0.27!12.85!ZNF548;;chr6:35227480..35227546,+!p1@ZNF76!0.27!10.61!ZNF76;;chr3:129158854..129158883,-!p3@MBD4!0.27!7.82!MBD4;;chr9:137218341..137218361,+!p2@RXRA!0.27!6.15!RXRA;;chr19:44439420..44439447,-!p1@ZNF45!0.27!5.59!ZNF45;;chr16:71918033..71918101,-!p1@ZNF821!0.27!5.59!ZNF821;;chr1:173837488..173837526,+!p1@ZBTB37!0.27!5.03!ZBTB37;;chr1:164528384..164528409,+!p3@PBX1!0.27!4.47!PBX1;;chr6:134274322..134274342,+!p3@TBPL1!0.27!4.47!TBPL1;;chr12:19592493..19592524,+!p3@AEBP2!0.27!3.91!AEBP2;;chr19:56904880..56904919,-!p1@ZNF582!0.27!3.35!ZNF582;;chr17:61919985..61920012,-!p3@SMARCD2!0.27!3.35!SMARCD2;;chr19:8578683..8578750,-!p2@ZNF414!0.27!2.79!ZNF414;;chr19:925727..925784,+!p3@ARID3A!0.27!2.79!ARID3A;;chr19:9879350..9879419,-!p2@ZNF846!0.27!2.79!ZNF846;;chr20:49547766..49547785,-!p5@ADNP!0.27!2.79!ADNP;;chr7:64254834..64254854,+!p2@ZNF138!0.27!2.23!ZNF138;;chr9:102584159..102584174,+!p2@NR4A3!0.27!2.23!NR4A3;;chr19:13134457..13134462,+!p5@NFIX!0.27!2.23!NFIX;;chr19:13134772..13134822,+!p2@NFIX!0.27!1.68!NFIX;;chr4:26322373..26322393,+!p4@RBPJ!0.27!1.68!RBPJ;;chr10:94449649..94449664,+!p3@HHEX!0.27!1.68!HHEX;;chr14:75894391..75894435,+!p2@JDP2!0.27!1.12!JDP2;;chr1:35644482..35644486,-!p11@SFPQ!0.27!1.12!SFPQ;;chr2:231084820..231084836,-!p5@SP110!0.27!1.12!SP110;;chr8:86089627..86089653,+!p3@E2F5!0.27!1.12!E2F5;;chrX:153363125..153363182,-!p1@MECP2!0.26!43.57!MECP2;;chr17:65821603..65821635,+!p1@BPTF!0.26!27.37!BPTF;;chr12:132628963..132629027,+!p1@NOC4L!0.26!23.46!NOC4L;;chr1:151431909..151431987,-!p1@POGZ!0.26!18.99!POGZ;;chr1:247495140..247495177,-!p1@ZNF496!0.26!17.32!ZNF496;;chr19:1863591..1863611,-!p2@KLF16!0.26!15.08!KLF16;;chr6:109804412..109804458,-!p1@ZBTB24!0.26!13.97!ZBTB24;;chr12:108154891..108154923,-!p1@PRDM4!0.26!13.97!PRDM4;;chr2:113033164..113033219,+!p1@ZC3H6!0.26!13.41!ZC3H6;;chr2:208394627..208394655,+!p2@CREB1!0.26!13.41!CREB1;;chr9:88969339..88969422,-!p2@ZCCHC6!0.26!12.29!ZCCHC6;;chr1:28995258..28995322,+!p1@GMEB1!0.26!11.73!GMEB1;;
+|ffid_belonging_in_development=CL:0000133,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=FF:0100400,FF:0100932,FF:0102912
 |fonse_cell_line_closure=FF:0100400,FF:0100932,FF:0102912

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FF:10728-110A8: Difference between revisions

From FANTOM5_SSTAR

Revision as of 19:45, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0