Coexpression cluster:C3291: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189443287025957!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00658986316595503!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0278663203817751!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0460609837473451!ELK4#2005;3:16.235681658468:0.000233604395574599:0.00255229725592798!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0167031809958407!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.0076064158179266!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00895386666949669!FOSL1#8061;3:39.713579716373:1.59554825631833e-05:0.000370387784711337!FOSL2#2355;3:16.9302006045617:0.000206016205317162:0.00242489873403799!FOXA1#3169;3:11.0814197493855:0.00073475527569867:0.0057993580893813!FOXA2#3170;3:24.6304637526652:6.68983856509345e-05:0.00107077402283494!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.0153722833007884!GATA2#2624;3:12.744931733554:0.000482952770428379:0.00436248956848032!GTF2F1#2962;3:12.7396608767577:0.000483552504743859:0.00432971022316049!HDAC2#3066;3:13.4156202366263:0.000414076139985721:0.00390163280259552!HNF4A#3172;3:23.1322903629537:8.07584663437677e-05:0.00122556429329799!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0127749695294522!JUN#3725;3:12.5128291923363:0.000510331399272625:0.00443341382537296!JUNB#3726;3:30.6106326598211:3.4847716247536e-05:0.000679637840742561!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0156313172020387!MAFK#7975;3:27.1007331378299:5.02195559325033e-05:0.00085630697176077!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0186022664116029!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.0071891228976828!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0293523037911111!RAD21#5885;3:10.3550338954563:0.000900491207356542:0.00662438551842712!REST#5978;3:9.65002871612802:0.00111263624711459:0.00765901773084634!RFX5#5993;3:12.0479108271951:0.000571724605031258:0.00483484583197243!RXRA#6256;3:20.0746171391333:0.000123573034843222:0.00164909841374793!SMARCA4#6597;3:156.765903307888:2.58908533335753e-07:1.33928421560439e-05!SMARCB1#6598;3:18.2527157811574:0.00016439776067989:0.00202662154481197!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00308372393722435!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0245683641217185!SPI1#6688;3:8.20432350852273:0.00181059318941052:0.0108895215726372!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00541262619887242!TFAP2A#7020;3:16.518634373045:0.000221803388076634:0.00247594314315258!TFAP2C#7022;3:10.8092286098602:0.000791674657575313:0.00613821154881278!TRIM28#10155;3:18.5905250452625:0.000155596929725528:0.00196640703577013!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0328324577105286!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0109035717584827 | |tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189443287025957!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00658986316595503!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0278663203817751!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0460609837473451!ELK4#2005;3:16.235681658468:0.000233604395574599:0.00255229725592798!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0167031809958407!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.0076064158179266!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00895386666949669!FOSL1#8061;3:39.713579716373:1.59554825631833e-05:0.000370387784711337!FOSL2#2355;3:16.9302006045617:0.000206016205317162:0.00242489873403799!FOXA1#3169;3:11.0814197493855:0.00073475527569867:0.0057993580893813!FOXA2#3170;3:24.6304637526652:6.68983856509345e-05:0.00107077402283494!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.0153722833007884!GATA2#2624;3:12.744931733554:0.000482952770428379:0.00436248956848032!GTF2F1#2962;3:12.7396608767577:0.000483552504743859:0.00432971022316049!HDAC2#3066;3:13.4156202366263:0.000414076139985721:0.00390163280259552!HNF4A#3172;3:23.1322903629537:8.07584663437677e-05:0.00122556429329799!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0127749695294522!JUN#3725;3:12.5128291923363:0.000510331399272625:0.00443341382537296!JUNB#3726;3:30.6106326598211:3.4847716247536e-05:0.000679637840742561!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0156313172020387!MAFK#7975;3:27.1007331378299:5.02195559325033e-05:0.00085630697176077!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0186022664116029!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.0071891228976828!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0293523037911111!RAD21#5885;3:10.3550338954563:0.000900491207356542:0.00662438551842712!REST#5978;3:9.65002871612802:0.00111263624711459:0.00765901773084634!RFX5#5993;3:12.0479108271951:0.000571724605031258:0.00483484583197243!RXRA#6256;3:20.0746171391333:0.000123573034843222:0.00164909841374793!SMARCA4#6597;3:156.765903307888:2.58908533335753e-07:1.33928421560439e-05!SMARCB1#6598;3:18.2527157811574:0.00016439776067989:0.00202662154481197!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00308372393722435!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0245683641217185!SPI1#6688;3:8.20432350852273:0.00181059318941052:0.0108895215726372!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00541262619887242!TFAP2A#7020;3:16.518634373045:0.000221803388076634:0.00247594314315258!TFAP2C#7022;3:10.8092286098602:0.000791674657575313:0.00613821154881278!TRIM28#10155;3:18.5905250452625:0.000155596929725528:0.00196640703577013!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0328324577105286!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0109035717584827 | ||
|tfbs_overrepresentation=0.147255,0.0586687,0.35968,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.0102054,0.225367,0.188771,0.00829112,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.241734,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.000768271,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,1.10232e-05,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.0105855,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.00703932,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.0134864,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.0124596,0.713218,0.782949,0.268011,0.051522,0.0986134,0.228731,0.335423,0.629514,0.261553,0.0222487,0.373681,0.00641099,0.49143,0.330703,0.395854,0.329568,0.53472,0.615744,0.271958,0.0475727,0.405773,0.39729,0.581713,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.376924,0.025356,0.647576,0.528324,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.0669244,0.283727,0.314747,0.577664,0.291709,0.448095,0.0563639,0.102333,0.292835,0.476744,0.439556,0.373868,0.57762,0.0154652,0.18237,0.706298,0.821217,0.747852,0.275351,0.236471,0.185661,0.346319,0.179399,0.270984,0.258117,0.155555,0.513852,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,4.58399e-05,0.762864,0.581837,0.412837,0.305671,0.546839,0.551561,0.448039,0.218623,0.312808,0.00743804,0.0451077,0.0747529,0.229003,0.650179,0.589326,0.50215,0.294698,0.34331,0.477304,0.289204,0.327108,0.683186,0.278044,0.0263998,0.428671,0.228096,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.516462,0.858756,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.18767,0.293698,0.284593,0.343734,0.306556,0.305777,0.06617,0.503082,0.522888,0.284629,0.262537,0.010587,0.226257,0.405955,0.41707,0.363685,0.464871,0.166672,0.206222,0.525396,0.0905337,0.00288466,0.269226,0.339277,0.552319,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.00710886,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.390395,0.0464827,0.00093131,0.00683084,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.015204,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.0419304,0.00481323,0.173708,0.0104618,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.00501606,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.739716,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.911304,0.76084,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.0277579,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.0298844,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.0597157,0.166967,0.188651,0.0813902,0.184948,0.156261,0.0546539,0.511859,0.0590944,0.247324,0.178389,0.218229,0.0290303,0.407281,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.0177337,0.0785808,0.00328135,0.0973145,0.231447,0.544776,0.43956,0.37006,0.10748,0.448797,0.197484,0.396996,0.36145,0.406019,0.381071,0.580441,0.643768,0.432035,0.138468,0.390366,0.145312,0.50058,0.443185,0.522904,0.875915,0.871256,0.227104,0.518585,0.0734371,0.38649,0.284625,0.504757,0.55194,0.729153,0.28907,0.00084117,0.0252589,0.00506733,0.574635,0.478174,0.336276,0.00403041,0.258219,0.446557,0.243383,0.777351,0.390974,0.0458848,0.319063,0.161598,0.0527155,0.644754,0.496032,0.0239796,0.0805771,0.78509,0.477353,0.78384,0.746954,0.771991,0.20342,0.200493,0.20558,0.300504,0.25656,0.0189087,0.349197,0.383291,0.156104,0.141318,0.0168417,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.0674279,0.616388,0.0978616,0.516511,0.322213,0.656109,0.33942,0.61031,0.387276,0.169614,0.221908,0.0433137,0.222037,0.416621,0.416292,0.128937,0.734551,0.215157,0.204817,0.452428,0.138871,0.673493,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.00137548,0.170369,0.0980968,0.365487,0.0425451,0.0889149,0.0758087,0.236011,0.203486,0.273398,0.375787,0.4466,8.80437e-05,0.0419637,0.637444,0.305885,0.0317395,0.0118241,0.30666,0.303709,0.495883,0.00161207,0.035296,0.250964,0.383276,0.00360665,0.504711,0.220231,0.509064,0.196976,0.191517,0.463751,0.0663581,0.307334,0.459728,0.283463,0.563586,0.00422311,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.24107,0.387069,0.332774,0.52832,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.0192444,0.258854,0.188263,0.0719199,0.264884,0.0139948,0.19104,0.163057,0.219428,0.0233135,0.0900729,0.0953646,0.166124,0.252184,0.0828367,0.255516,0.20753,0.119514,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.0213665,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.00394192,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.0218443,0.350452,0.0126763,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.0204324,0.124213,0.259632,0.30793,0.0173907,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.0367308,0.261744,0.203781,0.21382,0.0232077,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.036274,0.222798,0.172134,0.176789,0.0969345,0.202137,0.0541163,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.00312563,0.0407233,0.0537355,0.0577193,0.261724,0.0240944,0.187731,0.233626,0.189559,0.00339727,0.0981146,0.064145,0.0077532,0.0638699,0.0056723,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.0497481,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.0229018,0.19924,0.28689,0.236464,0.325148,0.00698179,0.218052,0.223831,0.11528,0.194982,0.0195259,0.281727,0.000393044,0.0342254,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.0228361,0.361435 | |tfbs_overrepresentation=0.147255,0.0586687,0.35968,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.0102054,0.225367,0.188771,0.00829112,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.241734,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.000768271,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,1.10232e-05,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.0105855,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.00703932,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.0134864,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.0124596,0.713218,0.782949,0.268011,0.051522,0.0986134,0.228731,0.335423,0.629514,0.261553,0.0222487,0.373681,0.00641099,0.49143,0.330703,0.395854,0.329568,0.53472,0.615744,0.271958,0.0475727,0.405773,0.39729,0.581713,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.376924,0.025356,0.647576,0.528324,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.0669244,0.283727,0.314747,0.577664,0.291709,0.448095,0.0563639,0.102333,0.292835,0.476744,0.439556,0.373868,0.57762,0.0154652,0.18237,0.706298,0.821217,0.747852,0.275351,0.236471,0.185661,0.346319,0.179399,0.270984,0.258117,0.155555,0.513852,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,4.58399e-05,0.762864,0.581837,0.412837,0.305671,0.546839,0.551561,0.448039,0.218623,0.312808,0.00743804,0.0451077,0.0747529,0.229003,0.650179,0.589326,0.50215,0.294698,0.34331,0.477304,0.289204,0.327108,0.683186,0.278044,0.0263998,0.428671,0.228096,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.516462,0.858756,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.18767,0.293698,0.284593,0.343734,0.306556,0.305777,0.06617,0.503082,0.522888,0.284629,0.262537,0.010587,0.226257,0.405955,0.41707,0.363685,0.464871,0.166672,0.206222,0.525396,0.0905337,0.00288466,0.269226,0.339277,0.552319,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.00710886,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.390395,0.0464827,0.00093131,0.00683084,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.015204,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.0419304,0.00481323,0.173708,0.0104618,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.00501606,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.739716,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.911304,0.76084,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.0277579,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.0298844,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.0597157,0.166967,0.188651,0.0813902,0.184948,0.156261,0.0546539,0.511859,0.0590944,0.247324,0.178389,0.218229,0.0290303,0.407281,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.0177337,0.0785808,0.00328135,0.0973145,0.231447,0.544776,0.43956,0.37006,0.10748,0.448797,0.197484,0.396996,0.36145,0.406019,0.381071,0.580441,0.643768,0.432035,0.138468,0.390366,0.145312,0.50058,0.443185,0.522904,0.875915,0.871256,0.227104,0.518585,0.0734371,0.38649,0.284625,0.504757,0.55194,0.729153,0.28907,0.00084117,0.0252589,0.00506733,0.574635,0.478174,0.336276,0.00403041,0.258219,0.446557,0.243383,0.777351,0.390974,0.0458848,0.319063,0.161598,0.0527155,0.644754,0.496032,0.0239796,0.0805771,0.78509,0.477353,0.78384,0.746954,0.771991,0.20342,0.200493,0.20558,0.300504,0.25656,0.0189087,0.349197,0.383291,0.156104,0.141318,0.0168417,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.0674279,0.616388,0.0978616,0.516511,0.322213,0.656109,0.33942,0.61031,0.387276,0.169614,0.221908,0.0433137,0.222037,0.416621,0.416292,0.128937,0.734551,0.215157,0.204817,0.452428,0.138871,0.673493,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.00137548,0.170369,0.0980968,0.365487,0.0425451,0.0889149,0.0758087,0.236011,0.203486,0.273398,0.375787,0.4466,8.80437e-05,0.0419637,0.637444,0.305885,0.0317395,0.0118241,0.30666,0.303709,0.495883,0.00161207,0.035296,0.250964,0.383276,0.00360665,0.504711,0.220231,0.509064,0.196976,0.191517,0.463751,0.0663581,0.307334,0.459728,0.283463,0.563586,0.00422311,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.24107,0.387069,0.332774,0.52832,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.0192444,0.258854,0.188263,0.0719199,0.264884,0.0139948,0.19104,0.163057,0.219428,0.0233135,0.0900729,0.0953646,0.166124,0.252184,0.0828367,0.255516,0.20753,0.119514,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.0213665,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.00394192,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.0218443,0.350452,0.0126763,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.0204324,0.124213,0.259632,0.30793,0.0173907,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.0367308,0.261744,0.203781,0.21382,0.0232077,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.036274,0.222798,0.172134,0.176789,0.0969345,0.202137,0.0541163,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.00312563,0.0407233,0.0537355,0.0577193,0.261724,0.0240944,0.187731,0.233626,0.189559,0.00339727,0.0981146,0.064145,0.0077532,0.0638699,0.0056723,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.0497481,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.0229018,0.19924,0.28689,0.236464,0.325148,0.00698179,0.218052,0.223831,0.11528,0.194982,0.0195259,0.281727,0.000393044,0.0342254,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.0228361,0.361435 | ||
|tfbs_overrepresentation_for_novel_motifs=0.699513,0.14394,0.690871,0.855819,1.54806,0.853988,0.937929,1.23863,0.491742,1.84557,0.820209,0.985163,0.436625,0.925331,0.639839,0.667627,1.17594,0.575162,1.14835,0.305559,0.69094,1.26332,0.845342,0.635379,0.743951,1.00973,0.409304,0.842925,0.645155,0.388328,0.795576,1.21459,0.534793,0.439574,0.599922,2.64886,0.596053,0.855276,0.567465,1.18324,0.598234,0.777097,1.32383,0.63803,0.461452,0.726632,0.939121,0.808003,1.98239,0.645308,1.02504,2.18821,0.893117,1.29475,1.45259,0.928548,1.56662,0.892517,0.388177,2.0644,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,0.502203,0.333216,1.45054,0.430728,3.81826,1.02656,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,0.498519,1.39759,0.169933,0.303648,0.993996,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,3.81931,0.560075,1.14422,1.27663,1.05794,0.360456,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,0.743661,0.622396,0.703975,1.26794,0.684398,0.830777,1.58942,0.594137,0.188952,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,0.974093,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,0.773313,0.539692,0.318511,0.250511,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,0.710709,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,1.3017,0.936473,1.42224 | |||
}} | }} | ||
Revision as of 16:02, 26 November 2012
Full id: C3291_large_Fibroblast_Mesenchymal_anaplastic_Renal_cervical_Pericytes
Phase1 CAGE Peaks
| Hg19::chr12:53343573..53343584,- | p6@KRT8 |
| Hg19::chr12:53343602..53343631,- | p3@KRT8 |
| Hg19::chr12:53343633..53343696,- | p2@KRT8 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 7.01e-35 | 253 |
| embryonic cell | 1.22e-19 | 250 |
| mesodermal cell | 2.06e-17 | 121 |
| animal cell | 1.39e-13 | 679 |
| eukaryotic cell | 1.39e-13 | 679 |
| squamous epithelial cell | 1.24e-10 | 63 |
| contractile cell | 2.00e-10 | 59 |
| lining cell | 1.22e-09 | 58 |
| barrier cell | 1.22e-09 | 58 |
| endothelial cell of vascular tree | 1.98e-09 | 24 |
| endothelial cell | 2.88e-09 | 36 |
| muscle cell | 7.62e-09 | 55 |
| smooth muscle cell | 1.07e-08 | 43 |
| smooth muscle myoblast | 1.07e-08 | 43 |
| blood vessel endothelial cell | 1.80e-08 | 18 |
| embryonic blood vessel endothelial progenitor cell | 1.80e-08 | 18 |
| meso-epithelial cell | 6.91e-08 | 45 |
| muscle precursor cell | 1.14e-07 | 58 |
| myoblast | 1.14e-07 | 58 |
| multi-potent skeletal muscle stem cell | 1.14e-07 | 58 |
| electrically responsive cell | 2.48e-07 | 61 |
| electrically active cell | 2.48e-07 | 61 |
| kidney cell | 2.48e-07 | 17 |
| kidney epithelial cell | 2.48e-07 | 17 |
| endodermal cell | 3.60e-07 | 58 |
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 5.24e-12 | 106 |
| cell type cancer | 8.84e-10 | 143 |
| disease of cellular proliferation | 7.50e-09 | 239 |
| cancer | 8.81e-09 | 235 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CCNT2#905 | 3 | 6.33620157696263 | 0.00393075003576489 | 0.0189443287025957 |
| CHD2#1106 | 3 | 10.3440228341169 | 0.000903370110274688 | 0.00658986316595503 |
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.0278663203817751 |
| ELF1#1997 | 3 | 4.25809795880754 | 0.0129517987505461 | 0.0460609837473451 |
| ELK4#2005 | 3 | 16.235681658468 | 0.000233604395574599 | 0.00255229725592798 |
| EP300#2033 | 3 | 6.7739417262232 | 0.00321688050010379 | 0.0167031809958407 |
| ETS1#2113 | 3 | 9.72876092220234 | 0.00108584009258484 | 0.0076064158179266 |
| FOS#2353 | 3 | 8.9979553088944 | 0.00137249927241713 | 0.00895386666949669 |
| FOSL1#8061 | 3 | 39.713579716373 | 1.59554825631833e-05 | 0.000370387784711337 |
| FOSL2#2355 | 3 | 16.9302006045617 | 0.000206016205317162 | 0.00242489873403799 |
| FOXA1#3169 | 3 | 11.0814197493855 | 0.00073475527569867 | 0.0057993580893813 |
| FOXA2#3170 | 3 | 24.6304637526652 | 6.68983856509345e-05 | 0.00107077402283494 |
| GABPB1#2553 | 3 | 7.06768383618217 | 0.00283221282541742 | 0.0153722833007884 |
| GATA2#2624 | 3 | 12.744931733554 | 0.000482952770428379 | 0.00436248956848032 |
| GTF2F1#2962 | 3 | 12.7396608767577 | 0.000483552504743859 | 0.00432971022316049 |
| HDAC2#3066 | 3 | 13.4156202366263 | 0.000414076139985721 | 0.00390163280259552 |
| HNF4A#3172 | 3 | 23.1322903629537 | 8.07584663437677e-05 | 0.00122556429329799 |
| IRF1#3659 | 3 | 7.6371637535639 | 0.00224469274729724 | 0.0127749695294522 |
| JUN#3725 | 3 | 12.5128291923363 | 0.000510331399272625 | 0.00443341382537296 |
| JUNB#3726 | 3 | 30.6106326598211 | 3.4847716247536e-05 | 0.000679637840742561 |
| JUND#3727 | 3 | 6.99466394187103 | 0.00292184504273499 | 0.0156313172020387 |
| MAFK#7975 | 3 | 27.1007331378299 | 5.02195559325033e-05 | 0.00085630697176077 |
| MAX#4149 | 3 | 6.45255550900712 | 0.00372191383426551 | 0.0186022664116029 |
| MXI1#4601 | 3 | 9.9615716287593 | 0.00101147054125902 | 0.0071891228976828 |
| MYC#4609 | 3 | 5.2222818716094 | 0.00702084375574015 | 0.0293523037911111 |
| RAD21#5885 | 3 | 10.3550338954563 | 0.000900491207356542 | 0.00662438551842712 |
| REST#5978 | 3 | 9.65002871612802 | 0.00111263624711459 | 0.00765901773084634 |
| RFX5#5993 | 3 | 12.0479108271951 | 0.000571724605031258 | 0.00483484583197243 |
| RXRA#6256 | 3 | 20.0746171391333 | 0.000123573034843222 | 0.00164909841374793 |
| SMARCA4#6597 | 3 | 156.765903307888 | 2.58908533335753e-07 | 1.33928421560439e-05 |
| SMARCB1#6598 | 3 | 18.2527157811574 | 0.00016439776067989 | 0.00202662154481197 |
| SMC3#9126 | 3 | 15.0449328449328 | 0.000293582542037187 | 0.00308372393722435 |
| SP1#6667 | 3 | 5.6983813781409 | 0.00540396270171217 | 0.0245683641217185 |
| SPI1#6688 | 3 | 8.20432350852273 | 0.00181059318941052 | 0.0108895215726372 |
| TAF7#6879 | 3 | 11.4330694049239 | 0.000669018198194583 | 0.00541262619887242 |
| TFAP2A#7020 | 3 | 16.518634373045 | 0.000221803388076634 | 0.00247594314315258 |
| TFAP2C#7022 | 3 | 10.8092286098602 | 0.000791674657575313 | 0.00613821154881278 |
| TRIM28#10155 | 3 | 18.5905250452625 | 0.000155596929725528 | 0.00196640703577013 |
| YY1#7528 | 3 | 4.91117074985386 | 0.00844145534180826 | 0.0328324577105286 |
| ZNF263#10127 | 3 | 8.22184163701068 | 0.00179904392556587 | 0.0109035717584827 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
