FFCP PHASE1:Hg19::chr10:104956992..104957037,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C0|description=CAGE_peak_at_chr10:104956992..104957037,-|id=chr10:104956992..104957037,-|ontology_enrichment_celltype=CL:0000766!6.29e-93!76;CL:0002057!4.38e-88!42;CL:0000860!2.63e-85!45;CL:0000839!9.67e-83!70;CL:0000557!3.76e-78!71;CL:0002194!1.43e-71!63;CL:0000576!1.43e-71!63;CL:0000040!1.43e-71!63;CL:0000559!1.43e-71!63;CL:0000763!2.95e-70!112;CL:0000049!2.95e-70!112;CL:0002009!5.48e-69!65;CL:0000738!6.66e-49!140;CL:0000037!7.47e-45!172;CL:0000566!7.47e-45!172;CL:0002032!3.88e-44!165;CL:0000837!3.88e-44!165;CL:0002031!2.25e-42!124;CL:0000988!1.80e-41!182;CL:0002087!8.21e-37!119;CL:0000134!1.19e-16!358;CL:0002320!5.28e-16!365;CL:0000219!1.88e-14!390;CL:0000048!5.29e-13!430;CL:0000723!1.39e-12!436;CL:0002393!2.50e-12!9;CL:0002397!2.50e-12!9;CL:0002274!2.95e-12!5;CL:0000457!2.95e-12!5;CL:0002191!2.95e-12!5;CL:0000097!2.95e-12!5;CL:0000831!2.95e-12!5;CL:0002028!2.95e-12!5;CL:0000034!4.85e-12!444;CL:0000094!4.26e-11!8;CL:0000081!7.77e-08!11|ontology_enrichment_celltype_v019=CL:0000860;5.19e-105;33!CL:0002057;5.19e-105;33!CL:0000473;2.35e-71;39!CL:0000234;2.35e-71;39!CL:0000576;4.38e-56;48!CL:0000766;2.32e-40;69!CL:0000763;1.93e-19;100!CL:0002087;2.28e-14;104!CL:0000771;9.27e-13;2!CL:0000094;1.38e-11;8!CL:0000738;1.18e-10;136!CL:0002393;7.97e-09;6!CL:0002397;7.97e-09;6!CL:0000081;1.86e-08;11!CL:0000767;2.74e-08;3|ontology_enrichment_celltype_v019_2=CL:0000860,2.93e-110,42;CL:0002057,2.93e-110,42;CL:0000473,8.47e-96,48;CL:0000234,8.47e-96,48;CL:0000766,1.03e-90,72;CL:0000839,5.53e-77,66;CL:0000557,9.07e-76,67;CL:0002194,1.51e-75,59;CL:0000576,1.51e-75,59;CL:0000040,1.51e-75,59;CL:0000559,1.51e-75,59;CL:0002009,6.23e-73,61;CL:0000763,7.49e-59,108;CL:0000049,7.49e-59,108;CL:0000738,1.25e-45,136;CL:0002031,4.41e-40,120;CL:0002032,1.12e-37,161;CL:0000837,1.12e-37,161;CL:0002087,2.18e-36,115;CL:0000037,7.17e-36,168;CL:0000988,9.33e-34,177;CL:0000134,6.99e-14,354;CL:0002320,1.71e-13,361;CL:0000771,9.00e-13,2;CL:0000219,4.04e-12,386;CL:0000094,1.33e-11,8;CL:0000048,1.94e-10,427;CL:0000723,3.31e-10,433;CL:0000034,6.61e-10,441;CL:0000081,1.80e-08,11;CL:0000767,2.64e-08,3|ontology_enrichment_development_v019=CL:0002057;7.13e-79;42!CL:0000049;6.99e-16;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!7.92e-68!80;UBERON:0001474!3.90e-62!86;UBERON:0002390!2.39e-59!102;UBERON:0003061!2.39e-59!102;UBERON:0002193!3.10e-57!112;UBERON:0004765!7.64e-51!101;UBERON:0001434!7.64e-51!101;UBERON:0002405!6.74e-49!115;UBERON:0002204!7.09e-28!167;UBERON:0003081!9.43e-27!216;UBERON:0002384!4.03e-15!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.97e-66,76;UBERON:0001474,4.70e-61,82;UBERON:0004765,3.46e-55,90;UBERON:0002405,3.04e-53,93;UBERON:0002390,2.89e-50,98;UBERON:0003061,2.89e-50,98;UBERON:0001434,3.71e-49,100;UBERON:0002193,3.96e-45,108;UBERON:0002204,3.06e-27,167;UBERON:0003081,2.15e-21,203;UBERON:0002384,5.82e-13,371;UBERON:0000926,1.10e-11,315;UBERON:0004120,1.10e-11,315;UBERON:0006603,1.10e-11,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0,1.23852898652861,0,0,0,0,0,0,1.10799081706375,1.20326668482085,0.651032612147555,0.447830948479849,0,0.515151135268373,0.436194716338694,0.755751887377619,0.727752183563449,2.55671940596253,2.05583944010913,4.33588919253145,3.16461631554365,3.07392847834921,10.8781825748749,13.7898272294647,9.03678557017357,5.41705946377367,1.88242339542605,1.09162460023138,2.02251136000576,17.4467818651414,23.7487480036309,11.5080682643827,0.659702600373432,1.19678194572979,2.13112375266347,6.09439401120026,3.97169657283798,4.9825779919646,3.51748131359441,1.0429658368404,8.47036494349955,1.21079900526674,9.94349617166425,14.5572698222807,0.422510572623884,1.27562579979026,0.628975936525128,0.112328631146495,0.300353785683013,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,5.27121669744253,3.87780264148325,0,0,0,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0.492663237895943,0.44024217006613,1.86595303986695,1.00883967391873,0.88369703398466,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr10:104956992..104957037,- | |||
|id=chr10:104956992..104957037,- | |||
|ontology_enrichment_celltype=CL:0000766!6.29e-93!76;CL:0002057!4.38e-88!42;CL:0000860!2.63e-85!45;CL:0000839!9.67e-83!70;CL:0000557!3.76e-78!71;CL:0002194!1.43e-71!63;CL:0000576!1.43e-71!63;CL:0000040!1.43e-71!63;CL:0000559!1.43e-71!63;CL:0000763!2.95e-70!112;CL:0000049!2.95e-70!112;CL:0002009!5.48e-69!65;CL:0000738!6.66e-49!140;CL:0000037!7.47e-45!172;CL:0000566!7.47e-45!172;CL:0002032!3.88e-44!165;CL:0000837!3.88e-44!165;CL:0002031!2.25e-42!124;CL:0000988!1.80e-41!182;CL:0002087!8.21e-37!119;CL:0000134!1.19e-16!358;CL:0002320!5.28e-16!365;CL:0000219!1.88e-14!390;CL:0000048!5.29e-13!430;CL:0000723!1.39e-12!436;CL:0002393!2.50e-12!9;CL:0002397!2.50e-12!9;CL:0002274!2.95e-12!5;CL:0000457!2.95e-12!5;CL:0002191!2.95e-12!5;CL:0000097!2.95e-12!5;CL:0000831!2.95e-12!5;CL:0002028!2.95e-12!5;CL:0000034!4.85e-12!444;CL:0000094!4.26e-11!8;CL:0000081!7.77e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.19e-105;33!CL:0002057;5.19e-105;33!CL:0000473;2.35e-71;39!CL:0000234;2.35e-71;39!CL:0000576;4.38e-56;48!CL:0000766;2.32e-40;69!CL:0000763;1.93e-19;100!CL:0002087;2.28e-14;104!CL:0000771;9.27e-13;2!CL:0000094;1.38e-11;8!CL:0000738;1.18e-10;136!CL:0002393;7.97e-09;6!CL:0002397;7.97e-09;6!CL:0000081;1.86e-08;11!CL:0000767;2.74e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.93e-110,42;CL:0002057,2.93e-110,42;CL:0000473,8.47e-96,48;CL:0000234,8.47e-96,48;CL:0000766,1.03e-90,72;CL:0000839,5.53e-77,66;CL:0000557,9.07e-76,67;CL:0002194,1.51e-75,59;CL:0000576,1.51e-75,59;CL:0000040,1.51e-75,59;CL:0000559,1.51e-75,59;CL:0002009,6.23e-73,61;CL:0000763,7.49e-59,108;CL:0000049,7.49e-59,108;CL:0000738,1.25e-45,136;CL:0002031,4.41e-40,120;CL:0002032,1.12e-37,161;CL:0000837,1.12e-37,161;CL:0002087,2.18e-36,115;CL:0000037,7.17e-36,168;CL:0000988,9.33e-34,177;CL:0000134,6.99e-14,354;CL:0002320,1.71e-13,361;CL:0000771,9.00e-13,2;CL:0000219,4.04e-12,386;CL:0000094,1.33e-11,8;CL:0000048,1.94e-10,427;CL:0000723,3.31e-10,433;CL:0000034,6.61e-10,441;CL:0000081,1.80e-08,11;CL:0000767,2.64e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;7.13e-79;42!CL:0000049;6.99e-16;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.92e-68!80;UBERON:0001474!3.90e-62!86;UBERON:0002390!2.39e-59!102;UBERON:0003061!2.39e-59!102;UBERON:0002193!3.10e-57!112;UBERON:0004765!7.64e-51!101;UBERON:0001434!7.64e-51!101;UBERON:0002405!6.74e-49!115;UBERON:0002204!7.09e-28!167;UBERON:0003081!9.43e-27!216;UBERON:0002384!4.03e-15!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.97e-66,76;UBERON:0001474,4.70e-61,82;UBERON:0004765,3.46e-55,90;UBERON:0002405,3.04e-53,93;UBERON:0002390,2.89e-50,98;UBERON:0003061,2.89e-50,98;UBERON:0001434,3.71e-49,100;UBERON:0002193,3.96e-45,108;UBERON:0002204,3.06e-27,167;UBERON:0003081,2.15e-21,203;UBERON:0002384,5.82e-13,371;UBERON:0000926,1.10e-11,315;UBERON:0004120,1.10e-11,315;UBERON:0006603,1.10e-11,315 | |||
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|short_description=p@chr10:104956992..104957037,- | |||
}} |
Revision as of 11:30, 10 September 2013
Short description: | p@chr10:104956992..104957037, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:104956992..104957037, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.93e-110 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.93e-110 | 42 |
defensive cell | 8.47e-96 | 48 |
phagocyte | 8.47e-96 | 48 |
myeloid leukocyte | 1.03e-90 | 72 |
myeloid lineage restricted progenitor cell | 5.53e-77 | 66 |
granulocyte monocyte progenitor cell | 9.07e-76 | 67 |
monopoietic cell | 1.51e-75 | 59 |
monocyte | 1.51e-75 | 59 |
monoblast | 1.51e-75 | 59 |
promonocyte | 1.51e-75 | 59 |
macrophage dendritic cell progenitor | 6.23e-73 | 61 |
myeloid cell | 7.49e-59 | 108 |
common myeloid progenitor | 7.49e-59 | 108 |
leukocyte | 1.25e-45 | 136 |
hematopoietic lineage restricted progenitor cell | 4.41e-40 | 120 |
hematopoietic oligopotent progenitor cell | 1.12e-37 | 161 |
hematopoietic multipotent progenitor cell | 1.12e-37 | 161 |
nongranular leukocyte | 2.18e-36 | 115 |
hematopoietic stem cell | 7.17e-36 | 168 |
hematopoietic cell | 9.33e-34 | 177 |
mesenchymal cell | 6.99e-14 | 354 |
connective tissue cell | 1.71e-13 | 361 |
eosinophil | 9.00e-13 | 2 |
motile cell | 4.04e-12 | 386 |
granulocyte | 1.33e-11 | 8 |
multi fate stem cell | 1.94e-10 | 427 |
somatic stem cell | 3.31e-10 | 433 |
stem cell | 6.61e-10 | 441 |
blood cell | 1.80e-08 | 11 |
basophil | 2.64e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.97e-66 | 76 |
bone element | 4.70e-61 | 82 |
skeletal element | 3.46e-55 | 90 |
immune system | 3.04e-53 | 93 |
hematopoietic system | 2.89e-50 | 98 |
blood island | 2.89e-50 | 98 |
skeletal system | 3.71e-49 | 100 |
hemolymphoid system | 3.96e-45 | 108 |
musculoskeletal system | 3.06e-27 | 167 |
lateral plate mesoderm | 2.15e-21 | 203 |
connective tissue | 5.82e-13 | 371 |
mesoderm | 1.10e-11 | 315 |
mesoderm-derived structure | 1.10e-11 | 315 |
presumptive mesoderm | 1.10e-11 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.