FFCP PHASE1:Hg19::chr11:2188016..2188030,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7054|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11782|TSSclassifier=S|UniProt=|association_with_transcript=-12bp_to_ENST00000461172_5end|coexpression_cluster_id=C323|description=CAGE_peak_2_at_TH_5end|id=chr11:2188016..2188030,-|ontology_enrichment_celltype=CL:0002368!4.24e-09!13;CL:0002202!4.88e-08!9;CL:0002632!4.88e-08!9;CL:0000349!6.17e-08!3;CL:0002577!6.17e-08!3;CL:0002328!3.17e-07!3;CL:0000068!5.98e-07!3;CL:0000069!5.98e-07!3;CL:0000307!5.98e-07!3;CL:0000377!5.98e-07!3|ontology_enrichment_celltype_v019=CL:0000349;2.99e-30;19!CL:0002577;4.02e-23;3!CL:0002536;3.82e-16;2!CL:0000650;4.94e-15;2!CL:1000500;4.94e-15;2!CL:1000618;4.94e-15;2!CL:1001318;4.94e-15;2!CL:0002173;4.94e-15;2!CL:0002537;8.41e-14;5!CL:0002599;1.10e-08;1!CL:0000669;5.82e-08;4!CL:1000507;7.32e-07;10!CL:1000494;7.32e-07;10|ontology_enrichment_celltype_v019_2=CL:0000349,2.62e-30,19;CL:0002577,3.89e-23,3;CL:0002536,3.83e-16,2;CL:0000650,5.71e-15,2;CL:1000500,5.71e-15,2;CL:1000618,5.71e-15,2;CL:1001318,5.71e-15,2;CL:0002173,5.71e-15,2;CL:0002537,7.24e-14,5;CL:0002599,1.18e-08,1;CL:0000669,6.25e-08,4;CL:1000507,7.63e-07,10;CL:1000494,7.63e-07,10|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005631!5.89e-15!14;UBERON:0000158!5.89e-15!14;UBERON:0004119!6.48e-15!169;UBERON:0000925!6.48e-15!169;UBERON:0006595!6.48e-15!169;UBERON:0000466!1.33e-10!126;UBERON:0001007!3.94e-10!155;UBERON:0001555!3.94e-10!155;UBERON:0007026!3.94e-10!155;UBERON:0000464!7.75e-10!104;UBERON:0001008!1.18e-09!45;UBERON:0001987!1.19e-09!4;UBERON:0004340!1.19e-09!4;UBERON:0000077!1.47e-09!130;UBERON:0004921!4.71e-09!129;UBERON:0004185!4.71e-09!129;UBERON:0002185!6.02e-09!4;UBERON:0000064!6.95e-09!219;UBERON:0005177!8.90e-09!107;UBERON:0001046!1.13e-08!19;UBERON:0006554!1.20e-08!44;UBERON:0003064!1.47e-08!37;UBERON:0000305!2.11e-08!7;UBERON:0000062!2.74e-08!511;UBERON:0003124!3.54e-08!7;UBERON:0000162!9.67e-08!14;UBERON:0001353!9.67e-08!14;UBERON:0000163!9.67e-08!14;UBERON:0006866!9.67e-08!14;UBERON:0000164!9.67e-08!14;UBERON:0000931!9.67e-08!14;UBERON:0000478!1.17e-07!24;UBERON:0004871!2.87e-07!8;UBERON:0004815!3.17e-07!3;UBERON:0002031!3.17e-07!3;UBERON:0003886!3.82e-07!63;UBERON:0004122!3.98e-07!15;UBERON:0005156!4.28e-07!59;UBERON:0000990!4.28e-07!59;UBERON:0005911!8.17e-07!82|ontology_enrichment_uberon_v019=UBERON:0000305;2.28e-26;7!UBERON:0005631;3.33e-26;10!UBERON:0000158;3.33e-26;10!UBERON:0000478;1.16e-23;24!UBERON:0001987;1.72e-17;4!UBERON:0003567;4.94e-15;2!UBERON:0003838;4.94e-15;2!UBERON:0003586;4.94e-15;2!UBERON:0005169;4.94e-15;2!UBERON:0002321;4.94e-15;2!UBERON:0005215;4.94e-15;2!UBERON:0002303;4.94e-15;2!UBERON:0002319;4.94e-15;2!UBERON:0004913;1.10e-08;1!UBERON:0003703;1.10e-08;1!UBERON:0001174;1.10e-08;1!UBERON:0004914;1.10e-08;1!UBERON:0000996;2.29e-08;1!UBERON:0003891;5.82e-08;4!UBERON:0004211;7.32e-07;10!UBERON:0009773;7.32e-07;10!UBERON:0001231;7.32e-07;10!UBERON:0004810;7.32e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.30e-41,14;UBERON:0000158,1.30e-41,14;UBERON:0000305,1.91e-26,7;UBERON:0000478,1.05e-23,24;UBERON:0004871,3.96e-23,8;UBERON:0001987,1.67e-17,4;UBERON:0004340,1.67e-17,4;UBERON:0003124,2.56e-17,7;UBERON:0003567,5.71e-15,2;UBERON:0003838,5.71e-15,2;UBERON:0003586,5.71e-15,2;UBERON:0005169,5.71e-15,2;UBERON:0002321,5.71e-15,2;UBERON:0005215,5.71e-15,2;UBERON:0002303,5.71e-15,2;UBERON:0002319,5.71e-15,2;UBERON:0004923,1.62e-09,66;UBERON:0004913,1.10e-08,1;UBERON:0003703,1.10e-08,1;UBERON:0001174,1.10e-08,1;UBERON:0004914,1.10e-08,1;UBERON:0001008,1.86e-08,48;UBERON:0000996,2.46e-08,1;UBERON:0003975,4.38e-08,22;UBERON:0003891,6.25e-08,4;UBERON:0004119,3.69e-07,160;UBERON:0000925,3.69e-07,160;UBERON:0006595,3.69e-07,160;UBERON:0004175,4.36e-07,25;UBERON:0004810,7.63e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,65.0955288947913,38.5099788213542,0,0,0,0,0,0,0,0.816002764977012,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0.486634870302636,0,0,0.087834785693126,0,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,0,0,0,0,0,0,0.219500570817251,1.1240175325762,0.201057944823262,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7054 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11782 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-12bp_to_ENST00000461172_5end | |||
|coexpression_cluster_id=C323 | |||
|description=CAGE_peak_2_at_TH_5end | |||
|id=chr11:2188016..2188030,- | |||
|ontology_enrichment_celltype=CL:0002368!4.24e-09!13;CL:0002202!4.88e-08!9;CL:0002632!4.88e-08!9;CL:0000349!6.17e-08!3;CL:0002577!6.17e-08!3;CL:0002328!3.17e-07!3;CL:0000068!5.98e-07!3;CL:0000069!5.98e-07!3;CL:0000307!5.98e-07!3;CL:0000377!5.98e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.99e-30;19!CL:0002577;4.02e-23;3!CL:0002536;3.82e-16;2!CL:0000650;4.94e-15;2!CL:1000500;4.94e-15;2!CL:1000618;4.94e-15;2!CL:1001318;4.94e-15;2!CL:0002173;4.94e-15;2!CL:0002537;8.41e-14;5!CL:0002599;1.10e-08;1!CL:0000669;5.82e-08;4!CL:1000507;7.32e-07;10!CL:1000494;7.32e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.62e-30,19;CL:0002577,3.89e-23,3;CL:0002536,3.83e-16,2;CL:0000650,5.71e-15,2;CL:1000500,5.71e-15,2;CL:1000618,5.71e-15,2;CL:1001318,5.71e-15,2;CL:0002173,5.71e-15,2;CL:0002537,7.24e-14,5;CL:0002599,1.18e-08,1;CL:0000669,6.25e-08,4;CL:1000507,7.63e-07,10;CL:1000494,7.63e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!5.89e-15!14;UBERON:0000158!5.89e-15!14;UBERON:0004119!6.48e-15!169;UBERON:0000925!6.48e-15!169;UBERON:0006595!6.48e-15!169;UBERON:0000466!1.33e-10!126;UBERON:0001007!3.94e-10!155;UBERON:0001555!3.94e-10!155;UBERON:0007026!3.94e-10!155;UBERON:0000464!7.75e-10!104;UBERON:0001008!1.18e-09!45;UBERON:0001987!1.19e-09!4;UBERON:0004340!1.19e-09!4;UBERON:0000077!1.47e-09!130;UBERON:0004921!4.71e-09!129;UBERON:0004185!4.71e-09!129;UBERON:0002185!6.02e-09!4;UBERON:0000064!6.95e-09!219;UBERON:0005177!8.90e-09!107;UBERON:0001046!1.13e-08!19;UBERON:0006554!1.20e-08!44;UBERON:0003064!1.47e-08!37;UBERON:0000305!2.11e-08!7;UBERON:0000062!2.74e-08!511;UBERON:0003124!3.54e-08!7;UBERON:0000162!9.67e-08!14;UBERON:0001353!9.67e-08!14;UBERON:0000163!9.67e-08!14;UBERON:0006866!9.67e-08!14;UBERON:0000164!9.67e-08!14;UBERON:0000931!9.67e-08!14;UBERON:0000478!1.17e-07!24;UBERON:0004871!2.87e-07!8;UBERON:0004815!3.17e-07!3;UBERON:0002031!3.17e-07!3;UBERON:0003886!3.82e-07!63;UBERON:0004122!3.98e-07!15;UBERON:0005156!4.28e-07!59;UBERON:0000990!4.28e-07!59;UBERON:0005911!8.17e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;2.28e-26;7!UBERON:0005631;3.33e-26;10!UBERON:0000158;3.33e-26;10!UBERON:0000478;1.16e-23;24!UBERON:0001987;1.72e-17;4!UBERON:0003567;4.94e-15;2!UBERON:0003838;4.94e-15;2!UBERON:0003586;4.94e-15;2!UBERON:0005169;4.94e-15;2!UBERON:0002321;4.94e-15;2!UBERON:0005215;4.94e-15;2!UBERON:0002303;4.94e-15;2!UBERON:0002319;4.94e-15;2!UBERON:0004913;1.10e-08;1!UBERON:0003703;1.10e-08;1!UBERON:0001174;1.10e-08;1!UBERON:0004914;1.10e-08;1!UBERON:0000996;2.29e-08;1!UBERON:0003891;5.82e-08;4!UBERON:0004211;7.32e-07;10!UBERON:0009773;7.32e-07;10!UBERON:0001231;7.32e-07;10!UBERON:0004810;7.32e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.30e-41,14;UBERON:0000158,1.30e-41,14;UBERON:0000305,1.91e-26,7;UBERON:0000478,1.05e-23,24;UBERON:0004871,3.96e-23,8;UBERON:0001987,1.67e-17,4;UBERON:0004340,1.67e-17,4;UBERON:0003124,2.56e-17,7;UBERON:0003567,5.71e-15,2;UBERON:0003838,5.71e-15,2;UBERON:0003586,5.71e-15,2;UBERON:0005169,5.71e-15,2;UBERON:0002321,5.71e-15,2;UBERON:0005215,5.71e-15,2;UBERON:0002303,5.71e-15,2;UBERON:0002319,5.71e-15,2;UBERON:0004923,1.62e-09,66;UBERON:0004913,1.10e-08,1;UBERON:0003703,1.10e-08,1;UBERON:0001174,1.10e-08,1;UBERON:0004914,1.10e-08,1;UBERON:0001008,1.86e-08,48;UBERON:0000996,2.46e-08,1;UBERON:0003975,4.38e-08,22;UBERON:0003891,6.25e-08,4;UBERON:0004119,3.69e-07,160;UBERON:0000925,3.69e-07,160;UBERON:0006595,3.69e-07,160;UBERON:0004175,4.36e-07,25;UBERON:0004810,7.63e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,65.0955288947913,38.5099788213542,0,0,0,0,0,0,0,0.816002764977012,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0.486634870302636,0,0,0.087834785693126,0,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,0,0,0,0,0,0,0.219500570817251,1.1240175325762,0.201057944823262,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587403472388222,0,0,0,0,61.2317694321444,31.6227335069944,35.3796643195726,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0.0920809889358963,0,0.182091168006717,0.262248829918848,0,0,0.784349769176855,0,0.105551628892876,0,0,0,0,1.89662506280697,1.00337954770971,0,0.831076008928724,1.34324852833307,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.495854746082934,0.384380134730212,0,0,0,0,0,0,0,0,0,0,0,0.949138274156178,0.190630193923825,0.511795582622668,0,0,0,0.539617372749944,0.54907405947211,0.117812402345686,0,0,0,2.43816869544795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0.670302275535787,1.08890984861323,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.2577737985711,1.48482340416319,31.3303916141217,0,0,0,0,0,0,0,1.0077309914171,0,0,0,0,0,0,1.28236427328014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,8.29403015302991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0,1.95551382734803,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0,1.40963004463334,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0.107410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0.419638523158333,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0.655087670040387,2.66140955190681,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0.0657727735628491,0,0.667388411352415,0.235479278551542,0,2.80272163313789,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96300467230486,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.490296643507811,0,0,0,0,0,0.187967835959707,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0.26721740526556,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.814032686109745,0,0,0,0,0,0.406896178315738,1.33151354837103,0,0 | |||
|short_description=p2@TH | |||
}} |
Revision as of 17:14, 10 September 2013
Short description: | p2@TH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TH_5end |
Coexpression cluster: | C323_Placental_Amniotic_neuroblastoma_amniotic_chorionic_hairy_locus |
Association with transcript: | -12bp_to_ENST00000461172_5end |
EntrezGene: | TH |
HGNC: | 11782 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.62e-30 | 19 |
placental epithelial cell | 3.89e-23 | 3 |
amniotic epithelial cell | 3.83e-16 | 2 |
mesangial cell | 5.71e-15 | 2 |
kidney interstitial cell | 5.71e-15 | 2 |
juxtaglomerular complex cell | 5.71e-15 | 2 |
renal interstitial pericyte | 5.71e-15 | 2 |
extraglomerular mesangial cell | 5.71e-15 | 2 |
amnion mesenchymal stem cell | 7.24e-14 | 5 |
smooth muscle cell of the esophagus | 1.18e-08 | 1 |
pericyte cell | 6.25e-08 | 4 |
kidney tubule cell | 7.63e-07 | 10 |
nephron tubule epithelial cell | 7.63e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.30e-41 | 14 |
membranous layer | 1.30e-41 | 14 |
amnion | 1.91e-26 | 7 |
extraembryonic structure | 1.05e-23 | 24 |
somatic layer of lateral plate mesoderm | 3.96e-23 | 8 |
placenta | 1.67e-17 | 4 |
allantois | 1.67e-17 | 4 |
chorion | 2.56e-17 | 7 |
abdomen connective tissue | 5.71e-15 | 2 |
abdominal segment connective tissue | 5.71e-15 | 2 |
trunk connective tissue | 5.71e-15 | 2 |
interstitial tissue | 5.71e-15 | 2 |
extraglomerular mesangium | 5.71e-15 | 2 |
kidney interstitium | 5.71e-15 | 2 |
juxtaglomerular apparatus | 5.71e-15 | 2 |
mesangium | 5.71e-15 | 2 |
organ component layer | 1.62e-09 | 66 |
hepatopancreatic ampulla | 1.10e-08 | 1 |
extrahepatic bile duct | 1.10e-08 | 1 |
common bile duct | 1.10e-08 | 1 |
duodenal papilla | 1.10e-08 | 1 |
renal system | 1.86e-08 | 48 |
vagina | 2.46e-08 | 1 |
internal female genitalia | 4.38e-08 | 22 |
stroma | 6.25e-08 | 4 |
endoderm-derived structure | 3.69e-07 | 160 |
endoderm | 3.69e-07 | 160 |
presumptive endoderm | 3.69e-07 | 160 |
internal genitalia | 4.36e-07 | 25 |
nephron tubule epithelium | 7.63e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.