FFCP PHASE1:Hg19::chr12:54332675..54332686,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3229|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5125|TSSclassifier=S|UniProt=P31276|association_with_transcript=99bp_to_NM_017410,uc001sei.2,uc010sop.1_5end|coexpression_cluster_id=C2216|description=CAGE_peak_4_at_HOXC13_5end|id=chr12:54332675..54332686,+|ontology_enrichment_celltype=CL:0000066!2.01e-17!254;CL:0000076!1.47e-13!62;CL:0002327!6.80e-10!4;CL:0002150!2.00e-08!3;CL:0000861!2.00e-08!3;CL:0002251!2.58e-07!21;CL:0000362!6.14e-07!8|ontology_enrichment_celltype_v019=CL:0002178;7.34e-10;3!CL:0002327;1.32e-07;4|ontology_enrichment_celltype_v019_2=CL:0002178,8.58e-10,3;CL:0000066,1.58e-08,253;CL:0002327,1.35e-07,4|ontology_enrichment_development_v019=UBERON:0008425;3.45e-08;1!UBERON:0005425;7.59e-08;1|ontology_enrichment_disease=DOID:0050687!2.68e-23!143;DOID:305!7.20e-23!106;DOID:162!3.26e-22!235;DOID:14566!2.04e-21!239;DOID:1749!5.85e-15!14|ontology_enrichment_disease_v019=DOID:3151;1.65e-08;1!DOID:3149;1.65e-08;1!DOID:5093;9.00e-08;4!DOID:1612;9.00e-08;4|ontology_enrichment_disease_v019_2=DOID:305,9.36e-15,106;DOID:0050687,1.22e-14,143;DOID:162,1.56e-14,235;DOID:14566,3.93e-14,239;DOID:3151,1.65e-08,1;DOID:3149,1.65e-08,1;DOID:5093,8.14e-08,4;DOID:1612,8.14e-08,4|ontology_enrichment_uberon=UBERON:0001737!3.54e-20!9;UBERON:0001557!1.28e-10!19;UBERON:0001911!6.80e-10!4;UBERON:0005333!6.80e-10!4;UBERON:0008425!6.80e-10!4;UBERON:0005311!6.80e-10!4;UBERON:0003343!1.05e-09!4;UBERON:0004785!1.05e-09!4;UBERON:0003729!9.48e-08!5|ontology_enrichment_uberon_v019=UBERON:0001737;2.70e-18;9!UBERON:0001557;2.70e-18;9!UBERON:0000941;7.59e-08;1!UBERON:0000997;7.59e-08;1!UBERON:0001785;7.59e-08;1!UBERON:0002464;7.59e-08;1!UBERON:0004904;7.59e-08;1!UBERON:0005056;7.59e-08;1!UBERON:0001021;7.59e-08;1!UBERON:0004176;7.59e-08;1!UBERON:0001911;1.32e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.26e-18,9;UBERON:0001557,1.31e-08,19;UBERON:0000941,8.69e-08,1;UBERON:0001785,8.69e-08,1;UBERON:0002464,8.69e-08,1;UBERON:0004904,8.69e-08,1;UBERON:0001021,8.69e-08,1;UBERON:0003902,8.69e-08,1;UBERON:0005425,8.69e-08,1;UBERON:0000997,9.94e-08,1;UBERON:0005056,9.94e-08,1;UBERON:0001911,1.35e-07,4;UBERON:0005333,1.35e-07,4;UBERON:0008425,1.35e-07,4;UBERON:0005311,1.35e-07,4|phase1_expression=0.908391896352783,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8929088006375,2.36018566109342,2.16909926895134,1.21323370005633,0.217879444092406,1.66089433377768,0.808987848960987,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0.491953754172454,0,0.878002283269004,0,0.201057944823262,0,0,0,0,0,0,0,0,0,2.37061319387782,0,0,0,0,0,0,0,1.52249488594842,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.868687840005475,0.410952645100767,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,4.80708320073629,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11125408127993,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0.7812832832557,2.27395999990109,0,0.341380344856499,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,6.69233972537296,0,0,0,0.359030577639089,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0.901940516486955,1.55532287095871,0,0.330991955875499,0,0,0,0,0,1.17590876897253,0,0,0,1.9351266257817,2.11959019549938,1.64230914106418,0,0,0,0.137041924646751,0,0,1.75996244461323,0,0,2.99714414373195,1.00863292007874,0.114536596165916,0,0,0,0,0.271808412147228,0.418411385249333,3.36594118199862,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,7.37956312718385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,2.26705925512272,3.47283711485751,0.734210113519403,1.96997725189636,0.617602894321944,0.219284049578707,0,0,0,0,0.690860683462397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,1.11542187833102,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0.785181748008205,0.1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3229 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5125 | |||
|TSSclassifier=S | |||
|UniProt=P31276 | |||
|association_with_transcript=99bp_to_NM_017410,uc001sei.2,uc010sop.1_5end | |||
|coexpression_cluster_id=C2216 | |||
|description=CAGE_peak_4_at_HOXC13_5end | |||
|id=chr12:54332675..54332686,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.01e-17!254;CL:0000076!1.47e-13!62;CL:0002327!6.80e-10!4;CL:0002150!2.00e-08!3;CL:0000861!2.00e-08!3;CL:0002251!2.58e-07!21;CL:0000362!6.14e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002178;7.34e-10;3!CL:0002327;1.32e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,8.58e-10,3;CL:0000066,1.58e-08,253;CL:0002327,1.35e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;3.45e-08;1!UBERON:0005425;7.59e-08;1 | |||
|ontology_enrichment_disease=DOID:0050687!2.68e-23!143;DOID:305!7.20e-23!106;DOID:162!3.26e-22!235;DOID:14566!2.04e-21!239;DOID:1749!5.85e-15!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;1.65e-08;1!DOID:3149;1.65e-08;1!DOID:5093;9.00e-08;4!DOID:1612;9.00e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.36e-15,106;DOID:0050687,1.22e-14,143;DOID:162,1.56e-14,235;DOID:14566,3.93e-14,239;DOID:3151,1.65e-08,1;DOID:3149,1.65e-08,1;DOID:5093,8.14e-08,4;DOID:1612,8.14e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.54e-20!9;UBERON:0001557!1.28e-10!19;UBERON:0001911!6.80e-10!4;UBERON:0005333!6.80e-10!4;UBERON:0008425!6.80e-10!4;UBERON:0005311!6.80e-10!4;UBERON:0003343!1.05e-09!4;UBERON:0004785!1.05e-09!4;UBERON:0003729!9.48e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.70e-18;9!UBERON:0001557;2.70e-18;9!UBERON:0000941;7.59e-08;1!UBERON:0000997;7.59e-08;1!UBERON:0001785;7.59e-08;1!UBERON:0002464;7.59e-08;1!UBERON:0004904;7.59e-08;1!UBERON:0005056;7.59e-08;1!UBERON:0001021;7.59e-08;1!UBERON:0004176;7.59e-08;1!UBERON:0001911;1.32e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.26e-18,9;UBERON:0001557,1.31e-08,19;UBERON:0000941,8.69e-08,1;UBERON:0001785,8.69e-08,1;UBERON:0002464,8.69e-08,1;UBERON:0004904,8.69e-08,1;UBERON:0001021,8.69e-08,1;UBERON:0003902,8.69e-08,1;UBERON:0005425,8.69e-08,1;UBERON:0000997,9.94e-08,1;UBERON:0005056,9.94e-08,1;UBERON:0001911,1.35e-07,4;UBERON:0005333,1.35e-07,4;UBERON:0008425,1.35e-07,4;UBERON:0005311,1.35e-07,4 | |||
|phase1_expression=0.908391896352783,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8929088006375,2.36018566109342,2.16909926895134,1.21323370005633,0.217879444092406,1.66089433377768,0.808987848960987,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0.491953754172454,0,0.878002283269004,0,0.201057944823262,0,0,0,0,0,0,0,0,0,2.37061319387782,0,0,0,0,0,0,0,1.52249488594842,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.868687840005475,0.410952645100767,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,4.80708320073629,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11125408127993,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0.7812832832557,2.27395999990109,0,0.341380344856499,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,6.69233972537296,0,0,0,0.359030577639089,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0.901940516486955,1.55532287095871,0,0.330991955875499,0,0,0,0,0,1.17590876897253,0,0,0,1.9351266257817,2.11959019549938,1.64230914106418,0,0,0,0.137041924646751,0,0,1.75996244461323,0,0,2.99714414373195,1.00863292007874,0.114536596165916,0,0,0,0,0.271808412147228,0.418411385249333,3.36594118199862,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,7.37956312718385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,2.26705925512272,3.47283711485751,0.734210113519403,1.96997725189636,0.617602894321944,0.219284049578707,0,0,0,0,0.690860683462397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,1.11542187833102,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0.785181748008205,0.11796972334774,4.4022863645203,0.924205329202706,0,0.690359926060101,0.198916222116275,0,0,0,0.785720083444267,0,0,0,0,0,0,0,0,0,0,0.766574565837572,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,1.04617282831313,0.695433089210318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471353094203252,0,0,0,0,0,0,0,0.71421575442263,0,0.962896400270019,0,0,0,4.89091842798872,0,0,0,0,0,0,0,0,0,0,0,0.735159196278759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@HOXC13 | |||
}} |
Revision as of 23:19, 10 September 2013
Short description: | p4@HOXC13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_HOXC13_5end |
Coexpression cluster: | C2216_keratoacanthoma_cervical_synovial_Wilms_gastric_oral_mesothelioma |
Association with transcript: | 99bp_to_NM_017410, uc001sei.2, uc010sop.1_5end |
EntrezGene: | HOXC13 |
HGNC: | 5125 |
UniProt: | P31276 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 8.58e-10 | 3 |
epithelial cell | 1.58e-08 | 253 |
mammary gland epithelial cell | 1.35e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.26e-18 | 9 |
upper respiratory tract | 1.31e-08 | 19 |
cranial nerve II | 8.69e-08 | 1 |
cranial nerve | 8.69e-08 | 1 |
nerve trunk | 8.69e-08 | 1 |
nerve connecting eye with brain | 8.69e-08 | 1 |
nerve | 8.69e-08 | 1 |
retinal neural layer | 8.69e-08 | 1 |
presumptive neural retina | 8.69e-08 | 1 |
mammalian vulva | 9.94e-08 | 1 |
external female genitalia | 9.94e-08 | 1 |
mammary gland | 1.35e-07 | 4 |
mammary bud | 1.35e-07 | 4 |
mammary ridge | 1.35e-07 | 4 |
mammary placode | 1.35e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.36e-15 | 106 |
cell type cancer | 1.22e-14 | 143 |
cancer | 1.56e-14 | 235 |
disease of cellular proliferation | 3.93e-14 | 239 |
skin squamous cell carcinoma | 1.65e-08 | 1 |
keratoacanthoma | 1.65e-08 | 1 |
thoracic cancer | 8.14e-08 | 4 |
breast cancer | 8.14e-08 | 4 |
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