FFCP PHASE1:Hg19::chr17:48610074..48610107,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55040|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18235|TSSclassifier=S|UniProt=E7EQK8,D6RBA4,D6R907,D6RBI9,F6QWW5,B4DIQ9|association_with_transcript=0bp_to_ENST00000442715,ENST00000503690,ENST00000507998,ENST00000510462,ENST00000512291,ENST00000512379,ENST00000514874,ENST00000515028,ENST00000537145,ENST00000541226,uc010wmt.1_5end|description=CAGE_peak_1_at_EPN3_5end|id=chr17:48610074..48610107,+|ontology_enrichment_celltype=CL:0002076!6.08e-19!43;CL:0000066!3.32e-15!254;CL:0000223!3.06e-12!59;CL:0002251!8.17e-10!21;CL:0002368!1.14e-09!13;CL:0002159!1.96e-07!13;CL:0002202!2.31e-07!9;CL:0002632!2.31e-07!9|ontology_enrichment_celltype_v019=CL:0002076;1.11e-16;42!CL:0002368;2.09e-11;13!CL:0002251;2.26e-10;20!CL:0002202;1.33e-08;9!CL:0002632;1.33e-08;9!CL:0002159;4.94e-08;14|ontology_enrichment_celltype_v019_2=CL:0002076,1.43e-21,42;CL:0000066,5.86e-16,253;CL:0000223,1.22e-14,58;CL:0002368,2.48e-11,13;CL:0002251,2.40e-10,20;CL:0002202,1.35e-08,9;CL:0002632,1.35e-08,9;CL:0002159,5.14e-08,14|ontology_enrichment_development_v019=CL:0000223;7.02e-08;58|ontology_enrichment_disease=DOID:1749!2.11e-11!14;DOID:305!6.28e-07!106|ontology_enrichment_disease_v019=DOID:1749;5.49e-12;14|ontology_enrichment_disease_v019_2=DOID:1749,6.60e-12,14;DOID:305,1.17e-07,106|ontology_enrichment_uberon=UBERON:0007023!8.36e-26!115;UBERON:0004119!2.42e-18!169;UBERON:0000925!2.42e-18!169;UBERON:0006595!2.42e-18!169;UBERON:0000064!4.86e-15!219;UBERON:0000062!6.47e-15!511;UBERON:0001007!2.19e-13!155;UBERON:0001555!2.19e-13!155;UBERON:0007026!2.19e-13!155;UBERON:0001004!1.17e-12!72;UBERON:0000468!1.72e-12!659;UBERON:0004921!1.77e-11!129;UBERON:0004185!1.77e-11!129;UBERON:0000922!2.25e-11!612;UBERON:0000077!4.37e-11!130;UBERON:0000467!1.57e-10!625;UBERON:0000480!2.02e-10!626;UBERON:0000161!2.20e-10!35;UBERON:0000464!2.31e-10!104;UBERON:0004121!3.51e-10!169;UBERON:0004111!1.21e-09!241;UBERON:0002050!1.61e-09!605;UBERON:0005423!1.61e-09!605;UBERON:0000924!1.80e-09!173;UBERON:0006601!1.80e-09!173;UBERON:0000481!2.02e-09!347;UBERON:0000153!3.00e-09!129;UBERON:0007811!3.00e-09!129;UBERON:0000923!3.16e-09!604;UBERON:0005291!3.16e-09!604;UBERON:0006598!3.16e-09!604;UBERON:0002532!3.16e-09!604;UBERON:0005631!4.19e-09!14;UBERON:0000158!4.19e-09!14;UBERON:0005153!4.25e-09!37;UBERON:0000166!1.35e-08!21;UBERON:0005181!1.97e-08!35;UBERON:0000033!2.46e-08!123;UBERON:0000475!3.64e-08!365;UBERON:0005178!3.83e-08!34;UBERON:0002224!3.83e-08!34;UBERON:0000466!4.43e-08!126;UBERON:0005157!7.17e-08!51;UBERON:0005911!1.16e-07!82;UBERON:0001049!1.32e-07!57;UBERON:0005068!1.32e-07!57;UBERON:0006241!1.32e-07!57;UBERON:0007135!1.32e-07!57;UBERON:0000065!1.43e-07!53;UBERON:0000344!4.88e-07!12;UBERON:0000915!5.47e-07!52|ontology_enrichment_uberon_v019=UBERON:0005911;7.72e-08;36!UBERON:0004807;1.09e-07;22!UBERON:0005178;2.17e-07;34!UBERON:0002224;2.17e-07;34!UBERON:0004921;2.21e-07;33!UBERON:0000161;6.02e-07;19!UBERON:0000166;6.02e-07;19!UBERON:0001555;7.33e-07;54!UBERON:0005181;7.35e-07;35!UBERON:0007196;8.26e-07;15!UBERON:0001558;8.26e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.53e-18,160;UBERON:0000925,1.53e-18,160;UBERON:0006595,1.53e-18,160;UBERON:0007023,2.78e-18,114;UBERON:0001007,4.06e-13,145;UBERON:0001555,4.06e-13,145;UBERON:0007026,4.06e-13,145;UBERON:0001004,9.56e-12,74;UBERON:0004921,1.45e-10,118;UBERON:0011216,4.16e-10,223;UBERON:0000161,7.88e-10,36;UBERON:0005631,2.05e-09,14;UBERON:0000158,2.05e-09,14;UBERON:0005157,1.72e-08,47;UBERON:0005153,1.91e-08,37;UBERON:0000922,4.79e-08,592;UBERON:0005178,5.15e-08,34;UBERON:0002224,5.15e-08,34;UBERON:0000065,6.76e-08,54;UBERON:0004121,7.09e-08,171;UBERON:0000924,7.09e-08,171;UBERON:0006601,7.09e-08,171;UBERON:0000166,8.00e-08,22;UBERON:0005911,1.03e-07,82;UBERON:0005181,1.26e-07,35;UBERON:0005423,1.37e-07,581;UBERON:0001008,3.07e-07,48;UBERON:0000915,5.33e-07,52;UBERON:0004175,5.53e-07,25;UBERON:0004807,7.30e-07,28;UBERON:0002050,7.37e-07,564;UBERON:0007196,8.14e-07,15;UBERON:0001558,8.14e-07,15;UBERON:0006554,8.91e-07,47|phase1_expression=0,0,0,0,0,0,0,0,0,4.66894479352867,21.6318362071453,39.9747710998215,25.3216299099315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,36.7768489791571,48.4941529232983,11.4623743151704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,4.12584087817795,21.1291267209674,21.1347132387125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61131726843659,0.760272105718513,4.39311703586705,0,0,0,0,0.112611480483322,0,0,0,0,0,19.1881382942715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85235910772225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9484771619409,13.6373060295417,16.6346665325622,0.365921118388786,0.927708378250397,1.39432731443422,0.621966330092223,1.7662459561294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55040 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18235 | |||
|TSSclassifier=S | |||
|UniProt=E7EQK8,D6RBA4,D6R907,D6RBI9,F6QWW5,B4DIQ9 | |||
|association_with_transcript=0bp_to_ENST00000442715,ENST00000503690,ENST00000507998,ENST00000510462,ENST00000512291,ENST00000512379,ENST00000514874,ENST00000515028,ENST00000537145,ENST00000541226,uc010wmt.1_5end | |||
|description=CAGE_peak_1_at_EPN3_5end | |||
|id=chr17:48610074..48610107,+ | |||
|ontology_enrichment_celltype=CL:0002076!6.08e-19!43;CL:0000066!3.32e-15!254;CL:0000223!3.06e-12!59;CL:0002251!8.17e-10!21;CL:0002368!1.14e-09!13;CL:0002159!1.96e-07!13;CL:0002202!2.31e-07!9;CL:0002632!2.31e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.11e-16;42!CL:0002368;2.09e-11;13!CL:0002251;2.26e-10;20!CL:0002202;1.33e-08;9!CL:0002632;1.33e-08;9!CL:0002159;4.94e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.43e-21,42;CL:0000066,5.86e-16,253;CL:0000223,1.22e-14,58;CL:0002368,2.48e-11,13;CL:0002251,2.40e-10,20;CL:0002202,1.35e-08,9;CL:0002632,1.35e-08,9;CL:0002159,5.14e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000223;7.02e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!2.11e-11!14;DOID:305!6.28e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.49e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.60e-12,14;DOID:305,1.17e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.36e-26!115;UBERON:0004119!2.42e-18!169;UBERON:0000925!2.42e-18!169;UBERON:0006595!2.42e-18!169;UBERON:0000064!4.86e-15!219;UBERON:0000062!6.47e-15!511;UBERON:0001007!2.19e-13!155;UBERON:0001555!2.19e-13!155;UBERON:0007026!2.19e-13!155;UBERON:0001004!1.17e-12!72;UBERON:0000468!1.72e-12!659;UBERON:0004921!1.77e-11!129;UBERON:0004185!1.77e-11!129;UBERON:0000922!2.25e-11!612;UBERON:0000077!4.37e-11!130;UBERON:0000467!1.57e-10!625;UBERON:0000480!2.02e-10!626;UBERON:0000161!2.20e-10!35;UBERON:0000464!2.31e-10!104;UBERON:0004121!3.51e-10!169;UBERON:0004111!1.21e-09!241;UBERON:0002050!1.61e-09!605;UBERON:0005423!1.61e-09!605;UBERON:0000924!1.80e-09!173;UBERON:0006601!1.80e-09!173;UBERON:0000481!2.02e-09!347;UBERON:0000153!3.00e-09!129;UBERON:0007811!3.00e-09!129;UBERON:0000923!3.16e-09!604;UBERON:0005291!3.16e-09!604;UBERON:0006598!3.16e-09!604;UBERON:0002532!3.16e-09!604;UBERON:0005631!4.19e-09!14;UBERON:0000158!4.19e-09!14;UBERON:0005153!4.25e-09!37;UBERON:0000166!1.35e-08!21;UBERON:0005181!1.97e-08!35;UBERON:0000033!2.46e-08!123;UBERON:0000475!3.64e-08!365;UBERON:0005178!3.83e-08!34;UBERON:0002224!3.83e-08!34;UBERON:0000466!4.43e-08!126;UBERON:0005157!7.17e-08!51;UBERON:0005911!1.16e-07!82;UBERON:0001049!1.32e-07!57;UBERON:0005068!1.32e-07!57;UBERON:0006241!1.32e-07!57;UBERON:0007135!1.32e-07!57;UBERON:0000065!1.43e-07!53;UBERON:0000344!4.88e-07!12;UBERON:0000915!5.47e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0005911;7.72e-08;36!UBERON:0004807;1.09e-07;22!UBERON:0005178;2.17e-07;34!UBERON:0002224;2.17e-07;34!UBERON:0004921;2.21e-07;33!UBERON:0000161;6.02e-07;19!UBERON:0000166;6.02e-07;19!UBERON:0001555;7.33e-07;54!UBERON:0005181;7.35e-07;35!UBERON:0007196;8.26e-07;15!UBERON:0001558;8.26e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.53e-18,160;UBERON:0000925,1.53e-18,160;UBERON:0006595,1.53e-18,160;UBERON:0007023,2.78e-18,114;UBERON:0001007,4.06e-13,145;UBERON:0001555,4.06e-13,145;UBERON:0007026,4.06e-13,145;UBERON:0001004,9.56e-12,74;UBERON:0004921,1.45e-10,118;UBERON:0011216,4.16e-10,223;UBERON:0000161,7.88e-10,36;UBERON:0005631,2.05e-09,14;UBERON:0000158,2.05e-09,14;UBERON:0005157,1.72e-08,47;UBERON:0005153,1.91e-08,37;UBERON:0000922,4.79e-08,592;UBERON:0005178,5.15e-08,34;UBERON:0002224,5.15e-08,34;UBERON:0000065,6.76e-08,54;UBERON:0004121,7.09e-08,171;UBERON:0000924,7.09e-08,171;UBERON:0006601,7.09e-08,171;UBERON:0000166,8.00e-08,22;UBERON:0005911,1.03e-07,82;UBERON:0005181,1.26e-07,35;UBERON:0005423,1.37e-07,581;UBERON:0001008,3.07e-07,48;UBERON:0000915,5.33e-07,52;UBERON:0004175,5.53e-07,25;UBERON:0004807,7.30e-07,28;UBERON:0002050,7.37e-07,564;UBERON:0007196,8.14e-07,15;UBERON:0001558,8.14e-07,15;UBERON:0006554,8.91e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,4.66894479352867,21.6318362071453,39.9747710998215,25.3216299099315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,36.7768489791571,48.4941529232983,11.4623743151704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,4.12584087817795,21.1291267209674,21.1347132387125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61131726843659,0.760272105718513,4.39311703586705,0,0,0,0,0.112611480483322,0,0,0,0,0,19.1881382942715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85235910772225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9484771619409,13.6373060295417,16.6346665325622,0.365921118388786,0.927708378250397,1.39432731443422,0.621966330092223,1.7662459561294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,10.822982591794,0,43.2416124509985,22.4803506515239,19.4020916754448,11.8513209802918,0,0,0,0,0,0.144366447761074,0,0,42.6710374898009,42.9243081047436,0,0.234004265139238,0,17.8094284574876,11.2548025893236,12.47620855733,7.16468181622786,23.250715081117,60.1910806289382,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,9.39695471483404,23.3009615314696,17.8410273064511,0,0,0,0,0,0,0,0,0,0,0,0,6.76812917713084,2.40607764363942,2.67034867914099,0,0,0.131124414959424,2.25599806453706,0.231046011313244,1.56869953835371,0,0,0,0,0,0,0.270946437543853,0.501689773854853,1.01950509218015,0.831076008928724,1.11937377361089,0,0,0,0,0,3.50339439602256,0,0,13.7823729119081,16.9015663969496,0,0,0,0,0,0,0,0,0,2.80984356113663,2.11409074101617,17.2277161867689,3.0347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.1446505706503,45.5805547364335,18.5114674264248,4.0481834334015,3.01353760869861,10.1082885400575,12.4160442990269,1.60806380144872,0,0,0,0,0,0,0,0,0.427296284509893,0,17.8879357666153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5912107983727,0,0,0,0,6.20735660317994,10.0967991483097,3.99308912729002,0,0,0,0,1.26675244876796,2.39097585901284,3.03912307084262,0,0,0,0,3.23526064130377,7.51888933637558,0,3.15658898038188,0,0,1.93866549219044,3.24688343566479,0,14.8443823818583,34.1093999985163,2.17499872630438,38.5759789687844,8.64462410995405,21.7476667226501,0,0,0,0,0,0,0.221158519862449,1.47773809476774,0.87754158861589,0,11.7115945194027,5.46346835376959,0,6.45578932286568,8.25770328569904,4.67183699264635,2.23300811812344,0.457987967009312,1.5991043280559,0,0,0,0,0,0,0,0,0,3.59112177950125,31.2390287869009,0,14.9289289661776,7.87272324079719,1.83309043480088,0,0,0,1.21322039365219,0.802577647298789,5.15381780595746,0,8.41357861407986,0,25.6479861852104,3.62972148145992,0.30607276163049,0,0,0,0,0,0,0,1.13843818411917,0,22.562765983567,9.01530056212274,20.545972752975,5.06707337901887,0,0,0,0,21.3375836274523,0,1.12990370390266,0,0,1.01297273529406,10.3642232849446,1.76349404553374,10.2457437474889,0,8.64542502924636,0,0,0,0,31.8186946732674,0,0,0,0,0.600420288709789,0.547621515567972,0,0,0,1.67569440763353,1.14580212005842,0,5.99037001496973,1.71690419254628,7.14148663813992,8.80103489576114,0,0,0,0,0,0,0,0,0.136203406111576,1.76828463311521,1.92555211236127,3.32352270423348,0.449947783103001,3.0952078182318,1.15424157650247,8.38586718998165,12.3724960459741,8.75991621854468,0,0,3.45447355175002,8.5763439164804,0.662091970365432,0.25426853765475,0,0,0,0,0,0,0,0.146552233678082,0,3.49063982176186,0.39669780522807,0,11.2770403570668,1.60181118851542,0.157204305099666,0.828478110694391,0,0,0,8.29843635101236,0,0,0,0,6.28216385000937,0.886068179966986,0.854183854313742,2.8793914062495,1.14681839138014,2.5513681853476,3.22901295295194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7973596699725,0,0,0,0,0,0.845248493434508,0,0,0,0,0,2.37795163123056,4.97661808026378,0,0,0,0,0,0,0,0,0,0,6.40456598628376,0,0,0.770750701157514,2.8339315265117,2.23487402680012,1.8460472781668,0,4.6335359151026,0.968853873791107,1.42769420259154,13.3480897161395,9.20163842112375,14.307430684691,4.15892398141218,0,0,0,6.31766758133761,0,18.7563362695942,4.7143205006656,0,1.47856086217045,3.44441681553813,2.34323429584154,4.13373593002368,2.7902956485319,0,7.67560873600055,1.48863353516788,0,19.6754138564977,0,0,0,1.36597314810779,8.6928322759386,0,0,13.8658255272737,4.14368473445949,0,10.7894459835307,10.6750606276699,0,0.560544326627578,0.913158720509496,0,0,0.857718530119876,0,0,0,0,0.414432328326074,0.85359238546975,3.45629830907046,19.7904585057328,0,0,18.6290302084009,5.0403511079691,0,0,1.23040974977572,1.17780280338292,9.38768022363475,0,0,0,2.4285549652957,0,0,0,4.17900503544152,0,0.150962843566674,4.70762364458462,0.437119121007915,0,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| |||
|short_description=p1@EPN3 | |||
}} |
Revision as of 14:31, 11 September 2013
Short description: | p1@EPN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_EPN3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000442715, ENST00000503690, ENST00000507998, ENST00000510462, ENST00000512291, ENST00000512379, ENST00000514874, ENST00000515028, ENST00000537145, ENST00000541226, uc010wmt.1_5end |
EntrezGene: | EPN3 |
HGNC: | 18235 |
UniProt: | E7EQK8D6RBA4D6R907D6RBI9F6QWW5B4DIQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.43e-21 | 42 |
epithelial cell | 5.86e-16 | 253 |
endodermal cell | 1.22e-14 | 58 |
respiratory epithelial cell | 2.48e-11 | 13 |
epithelial cell of alimentary canal | 2.40e-10 | 20 |
epithelial cell of tracheobronchial tree | 1.35e-08 | 9 |
epithelial cell of lower respiratory tract | 1.35e-08 | 9 |
general ecto-epithelial cell | 5.14e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.60e-12 | 14 |
carcinoma | 1.17e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.