FFCP PHASE1:Hg19::chr1:101705129..101705148,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C3839|description=CAGE_peak_at_chr1:101705129..101705148,+|id=chr1:101705129..101705148,+|ontology_enrichment_celltype=CL:0000115!3.54e-28!35;CL:0002139!3.62e-28!24;CL:0000071!1.32e-20!18;CL:0002546!1.32e-20!18;CL:0002078!3.36e-20!44;CL:0000213!1.93e-15!57;CL:0000215!1.93e-15!57;CL:1000413!3.44e-13!9;CL:0002544!2.88e-09!6;CL:0005020!3.79e-09!6;CL:0002138!3.79e-09!6;CL:0005022!3.79e-09!6|ontology_enrichment_celltype_v019=CL:0002139;5.14e-53;24!CL:0000115;5.54e-48;36!CL:1000413;1.23e-36;9!CL:0000071;8.20e-34;18!CL:0002078;1.21e-28;45!CL:0002544;4.97e-22;6!CL:0002138;1.12e-21;6!CL:0000213;8.21e-20;58!CL:0000215;8.21e-20;58!CL:0002545;1.42e-11;2!CL:0002188;2.74e-10;5!CL:0002144;1.85e-08;3!CL:1000746;1.79e-07;7!CL:1000612;1.79e-07;7|ontology_enrichment_celltype_v019_2=CL:0000115,8.46e-55,36;CL:0002139,1.71e-53,24;CL:0002078,5.98e-43,45;CL:1000413,5.19e-37,9;CL:0000071,5.17e-34,18;CL:0002546,5.17e-34,18;CL:0000213,2.53e-32,58;CL:0000215,2.53e-32,58;CL:0002544,3.00e-22,6;CL:0005020,5.33e-22,6;CL:0002138,5.33e-22,6;CL:0005022,5.33e-22,6;CL:0000222,3.45e-13,121;CL:0002545,9.48e-12,2;CL:0002188,2.97e-10,5;CL:0002144,1.79e-08,3;CL:0000076,3.32e-08,63;CL:1000746,1.90e-07,7;CL:1000612,1.90e-07,7|ontology_enrichment_development_v019=CL:0002546;8.20e-34;18!CL:0005022;1.12e-21;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001986!1.32e-20!18;UBERON:0004638!1.32e-20!18;UBERON:0004852!1.32e-20!18;UBERON:0000487!1.35e-17!22;UBERON:0006914!9.97e-15!25;UBERON:0003915!3.44e-13!9;UBERON:0004700!3.44e-13!9;UBERON:0001917!3.44e-13!9;UBERON:0001009!3.40e-12!113;UBERON:0007023!5.46e-12!115;UBERON:0000055!7.33e-11!69;UBERON:0004535!1.54e-10!110;UBERON:0002049!1.22e-09!79;UBERON:0007798!1.22e-09!79;UBERON:0001981!1.33e-07!60;UBERON:0007500!1.33e-07!60;UBERON:0004537!1.33e-07!60;UBERON:0006965!1.33e-07!60;UBERON:0000025!3.87e-07!194;UBERON:0004872!9.40e-07!84|ontology_enrichment_uberon_v019=UBERON:0003915;1.23e-36;9!UBERON:0004700;1.23e-36;9!UBERON:0001917;1.23e-36;9!UBERON:0004638;8.20e-34;18!UBERON:0001986;8.20e-34;18!UBERON:0004852;8.20e-34;18!UBERON:0000487;2.81e-27;22!UBERON:0006914;9.51e-24;25!UBERON:0000490;2.06e-16;33!UBERON:0001473;3.22e-16;8!UBERON:0004536;3.22e-16;8!UBERON:0006558;3.22e-16;8!UBERON:0002465;6.17e-13;10!UBERON:0005800;1.42e-11;2!UBERON:0001515;1.42e-11;2!UBERON:0000055;3.99e-11;65!UBERON:0007500;2.43e-09;56!UBERON:0001981;2.43e-09;56!UBERON:0004537;2.43e-09;56!UBERON:0010523;1.85e-08;3!UBERON:0001915;1.85e-08;3!UBERON:0001982;1.85e-08;3!UBERON:0004151;5.34e-08;3!UBERON:0001009;8.26e-08;112!UBERON:0000074;1.79e-07;7!UBERON:0001229;1.79e-07;7!UBERON:0002049;2.09e-07;75!UBERON:0007798;2.09e-07;75!UBERON:0001637;3.11e-07;42!UBERON:0003509;3.11e-07;42!UBERON:0004572;3.11e-07;42!UBERON:0002134;8.72e-07;1!UBERON:0005208;8.72e-07;1!UBERON:0004145;8.72e-07;1!UBERON:0005946;8.72e-07;1!UBERON:0005965;8.72e-07;1!UBERON:0002078;8.72e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0003915,5.19e-37,9;UBERON:0004700,5.19e-37,9;UBERON:0001917,5.19e-37,9;UBERON:0004638,5.17e-34,18;UBERON:0001986,5.17e-34,18;UBERON:0004852,5.17e-34,18;UBERON:0000487,1.93e-27,22;UBERON:0006914,6.87e-24,25;UBERON:0000055,2.12e-21,68;UBERON:0002049,3.81e-18,78;UBERON:0007798,3.81e-18,78;UBERON:0001009,4.98e-18,112;UBERON:0004535,8.00e-17,109;UBERON:0001473,1.86e-16,8;UBERON:0004536,1.86e-16,8;UBERON:0006558,1.86e-16,8;UBERON:0002465,3.99e-13,10;UBERON:0007500,1.27e-12,59;UBERON:0001981,1.27e-12,59;UBERON:0004537,1.27e-12,59;UBERON:0006965,1.27e-12,59;UBERON:0005800,9.48e-12,2;UBERON:0001515,9.48e-12,2;UBERON:0004872,1.15e-09,83;UBERON:0003914,1.76e-09,117;UBERON:0004111,2.20e-09,240;UBERON:0010523,1.79e-08,3;UBERON:0001915,1.79e-08,3;UBERON:0001982,1.79e-08,3;UBERON:0004151,4.40e-08,3;UBERON:0000025,1.32e-07,192;UBERON:0010532,1.90e-07,7;UBERON:0000074,1.90e-07,7;UBERON:0001229,1.90e-07,7;UBERON:0001230,1.90e-07,7;UBERON:0003220,1.90e-07,7;UBERON:0005749,1.90e-07,7;UBERON:0004199,1.90e-07,7;UBERON:0004209,1.90e-07,7;UBERON:0004198,1.90e-07,7;UBERON:0001637,5.57e-07,42;UBERON:0003509,5.57e-07,42;UBERON:0004572,5.57e-07,42|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0.329851300186716,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0.426730222566507,0,0.574752439954483,0,0.954053754535364,0,0.587237189370939,0.382273228125229,1.32171328579026,0.560508562981536,0,0.196709770113833,0.393010762749165,0.822405995998037,0.334372990781356,0.651844533267181,0,0,0.891283655081389,0.589211814949674,0.221533894583621,0,0,0.260118695119756,0.328875809207352,0.552700035571697,0.869409257205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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3839 | |||
|description=CAGE_peak_at_chr1:101705129..101705148,+ | |||
|id=chr1:101705129..101705148,+ | |||
|ontology_enrichment_celltype=CL:0000115!3.54e-28!35;CL:0002139!3.62e-28!24;CL:0000071!1.32e-20!18;CL:0002546!1.32e-20!18;CL:0002078!3.36e-20!44;CL:0000213!1.93e-15!57;CL:0000215!1.93e-15!57;CL:1000413!3.44e-13!9;CL:0002544!2.88e-09!6;CL:0005020!3.79e-09!6;CL:0002138!3.79e-09!6;CL:0005022!3.79e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.14e-53;24!CL:0000115;5.54e-48;36!CL:1000413;1.23e-36;9!CL:0000071;8.20e-34;18!CL:0002078;1.21e-28;45!CL:0002544;4.97e-22;6!CL:0002138;1.12e-21;6!CL:0000213;8.21e-20;58!CL:0000215;8.21e-20;58!CL:0002545;1.42e-11;2!CL:0002188;2.74e-10;5!CL:0002144;1.85e-08;3!CL:1000746;1.79e-07;7!CL:1000612;1.79e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,8.46e-55,36;CL:0002139,1.71e-53,24;CL:0002078,5.98e-43,45;CL:1000413,5.19e-37,9;CL:0000071,5.17e-34,18;CL:0002546,5.17e-34,18;CL:0000213,2.53e-32,58;CL:0000215,2.53e-32,58;CL:0002544,3.00e-22,6;CL:0005020,5.33e-22,6;CL:0002138,5.33e-22,6;CL:0005022,5.33e-22,6;CL:0000222,3.45e-13,121;CL:0002545,9.48e-12,2;CL:0002188,2.97e-10,5;CL:0002144,1.79e-08,3;CL:0000076,3.32e-08,63;CL:1000746,1.90e-07,7;CL:1000612,1.90e-07,7 | |||
|ontology_enrichment_development_v019=CL:0002546;8.20e-34;18!CL:0005022;1.12e-21;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.32e-20!18;UBERON:0004638!1.32e-20!18;UBERON:0004852!1.32e-20!18;UBERON:0000487!1.35e-17!22;UBERON:0006914!9.97e-15!25;UBERON:0003915!3.44e-13!9;UBERON:0004700!3.44e-13!9;UBERON:0001917!3.44e-13!9;UBERON:0001009!3.40e-12!113;UBERON:0007023!5.46e-12!115;UBERON:0000055!7.33e-11!69;UBERON:0004535!1.54e-10!110;UBERON:0002049!1.22e-09!79;UBERON:0007798!1.22e-09!79;UBERON:0001981!1.33e-07!60;UBERON:0007500!1.33e-07!60;UBERON:0004537!1.33e-07!60;UBERON:0006965!1.33e-07!60;UBERON:0000025!3.87e-07!194;UBERON:0004872!9.40e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0003915;1.23e-36;9!UBERON:0004700;1.23e-36;9!UBERON:0001917;1.23e-36;9!UBERON:0004638;8.20e-34;18!UBERON:0001986;8.20e-34;18!UBERON:0004852;8.20e-34;18!UBERON:0000487;2.81e-27;22!UBERON:0006914;9.51e-24;25!UBERON:0000490;2.06e-16;33!UBERON:0001473;3.22e-16;8!UBERON:0004536;3.22e-16;8!UBERON:0006558;3.22e-16;8!UBERON:0002465;6.17e-13;10!UBERON:0005800;1.42e-11;2!UBERON:0001515;1.42e-11;2!UBERON:0000055;3.99e-11;65!UBERON:0007500;2.43e-09;56!UBERON:0001981;2.43e-09;56!UBERON:0004537;2.43e-09;56!UBERON:0010523;1.85e-08;3!UBERON:0001915;1.85e-08;3!UBERON:0001982;1.85e-08;3!UBERON:0004151;5.34e-08;3!UBERON:0001009;8.26e-08;112!UBERON:0000074;1.79e-07;7!UBERON:0001229;1.79e-07;7!UBERON:0002049;2.09e-07;75!UBERON:0007798;2.09e-07;75!UBERON:0001637;3.11e-07;42!UBERON:0003509;3.11e-07;42!UBERON:0004572;3.11e-07;42!UBERON:0002134;8.72e-07;1!UBERON:0005208;8.72e-07;1!UBERON:0004145;8.72e-07;1!UBERON:0005946;8.72e-07;1!UBERON:0005965;8.72e-07;1!UBERON:0002078;8.72e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003915,5.19e-37,9;UBERON:0004700,5.19e-37,9;UBERON:0001917,5.19e-37,9;UBERON:0004638,5.17e-34,18;UBERON:0001986,5.17e-34,18;UBERON:0004852,5.17e-34,18;UBERON:0000487,1.93e-27,22;UBERON:0006914,6.87e-24,25;UBERON:0000055,2.12e-21,68;UBERON:0002049,3.81e-18,78;UBERON:0007798,3.81e-18,78;UBERON:0001009,4.98e-18,112;UBERON:0004535,8.00e-17,109;UBERON:0001473,1.86e-16,8;UBERON:0004536,1.86e-16,8;UBERON:0006558,1.86e-16,8;UBERON:0002465,3.99e-13,10;UBERON:0007500,1.27e-12,59;UBERON:0001981,1.27e-12,59;UBERON:0004537,1.27e-12,59;UBERON:0006965,1.27e-12,59;UBERON:0005800,9.48e-12,2;UBERON:0001515,9.48e-12,2;UBERON:0004872,1.15e-09,83;UBERON:0003914,1.76e-09,117;UBERON:0004111,2.20e-09,240;UBERON:0010523,1.79e-08,3;UBERON:0001915,1.79e-08,3;UBERON:0001982,1.79e-08,3;UBERON:0004151,4.40e-08,3;UBERON:0000025,1.32e-07,192;UBERON:0010532,1.90e-07,7;UBERON:0000074,1.90e-07,7;UBERON:0001229,1.90e-07,7;UBERON:0001230,1.90e-07,7;UBERON:0003220,1.90e-07,7;UBERON:0005749,1.90e-07,7;UBERON:0004199,1.90e-07,7;UBERON:0004209,1.90e-07,7;UBERON:0004198,1.90e-07,7;UBERON:0001637,5.57e-07,42;UBERON:0003509,5.57e-07,42;UBERON:0004572,5.57e-07,42 | |||
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|short_description=p@chr1:101705129..101705148,+ | |||
}} |
Revision as of 23:10, 11 September 2013
Short description: | p@chr1:101705129..101705148, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:101705129..101705148, + |
Coexpression cluster: | C3839_hairy_rhabdomyosarcoma_Lymphatic_Endothelial_small_leukemia_lung |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 8.46e-55 | 36 |
endothelial cell of vascular tree | 1.71e-53 | 24 |
meso-epithelial cell | 5.98e-43 | 45 |
endothelial cell of artery | 5.19e-37 | 9 |
blood vessel endothelial cell | 5.17e-34 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.17e-34 | 18 |
lining cell | 2.53e-32 | 58 |
barrier cell | 2.53e-32 | 58 |
aortic endothelial cell | 3.00e-22 | 6 |
lymphangioblast | 5.33e-22 | 6 |
endothelial cell of lymphatic vessel | 5.33e-22 | 6 |
vascular lymphangioblast | 5.33e-22 | 6 |
mesodermal cell | 3.45e-13 | 121 |
thoracic aorta endothelial cell | 9.48e-12 | 2 |
glomerular endothelial cell | 2.97e-10 | 5 |
capillary endothelial cell | 1.79e-08 | 3 |
squamous epithelial cell | 3.32e-08 | 63 |
glomerular cell | 1.90e-07 | 7 |
kidney corpuscule cell | 1.90e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.