FFCP PHASE1:Hg19::chr1:150254401..150254408,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C513|description=CAGE_peak_at_chr1:150254401..150254408,-|id=chr1:150254401..150254408,-|ontology_enrichment_celltype=CL:0000066!1.25e-09!254;CL:0002321!1.66e-09!248;CL:0002202!2.51e-09!9;CL:0002632!2.51e-09!9;CL:0000220!6.36e-09!246;CL:0002368!8.61e-09!13;CL:0000221!1.09e-07!71;CL:0000133!3.06e-07!59;CL:0002076!3.35e-07!43|ontology_enrichment_celltype_v019=CL:0002202;2.65e-18;9!CL:0002632;2.65e-18;9!CL:0002368;2.46e-12;13!CL:0002328;3.21e-11;3!CL:0000082;7.02e-08;19|ontology_enrichment_celltype_v019_2=CL:0002202,1.64e-18,9;CL:0002632,1.64e-18,9;CL:0002368,1.78e-12,13;CL:0002328,2.59e-11,3;CL:0002076,4.12e-09,42;CL:0000082,4.63e-08,19;CL:0000223,5.25e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!3.29e-17!143;DOID:14566!8.01e-14!239;DOID:162!1.26e-13!235;DOID:305!1.52e-09!106|ontology_enrichment_disease_v019=DOID:299;1.62e-11;25!DOID:1909;3.79e-08;2!DOID:3910;1.94e-07;2!DOID:4929;1.94e-07;2|ontology_enrichment_disease_v019_2=DOID:0050687,3.49e-17,143;DOID:299,2.32e-11,25;DOID:162,2.34e-11,235;DOID:14566,6.18e-11,239;DOID:305,9.71e-10,106;DOID:1909,3.20e-08,2;DOID:3910,1.27e-07,2;DOID:4929,4.00e-07,2|ontology_enrichment_uberon=UBERON:0005153!6.17e-08!37;UBERON:0005157!9.10e-07!51|ontology_enrichment_uberon_v019=UBERON:0004815;3.21e-11;3!UBERON:0002031;3.21e-11;3!UBERON:0007196;1.52e-10;15!UBERON:0001558;1.52e-10;15!UBERON:0000485;4.66e-08;7!UBERON:0004802;7.02e-08;19!UBERON:0000115;7.02e-08;19!UBERON:0004903;1.94e-07;2!UBERON:0002173;1.94e-07;2!UBERON:0002186;1.94e-07;2!UBERON:0002185;7.05e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.59e-11,3;UBERON:0002031,2.59e-11,3;UBERON:0007196,1.15e-10,15;UBERON:0001558,1.15e-10,15;UBERON:0005157,2.92e-09,47;UBERON:0000485,3.35e-09,9;UBERON:0005153,6.20e-09,37;UBERON:0004802,4.63e-08,19;UBERON:0000115,4.63e-08,19;UBERON:0004903,1.27e-07,2;UBERON:0002173,1.27e-07,2;UBERON:0002186,1.27e-07,2;UBERON:0002185,6.23e-07,5;UBERON:0002048,8.08e-07,22;UBERON:0000117,8.08e-07,22;UBERON:0000171,8.08e-07,22;UBERON:0000170,8.08e-07,22;UBERON:0005597,8.08e-07,22;UBERON:0000118,8.08e-07,22;UBERON:0005178,8.42e-07,34;UBERON:0002224,8.42e-07,34|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0.218441372130172,0,0,0.331397375727916,0,0,0,0,0.369363174230364,0,0,0,0.136874425072884,0,0,0.0821005894499457,0,0,0,0.154816123316076,6.43594857135249,1.50602959389125,2.21852406100073,0.0774672005803016,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0,0.144846518960824,0,0,0,0.665188192387692,0.351339142772504,0,0,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0.993943903390637,0.12663051166458,0.264818361626438,0.286836620748814,0,0,0,0.74000264525148,0,0.134710672069688,0,0,0,0,0,0,0.597794722207204,0.23486899728753,0.161872944368132,0.842704840213491,0.204154171254893,0.245668634623536,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0.438977620880838,0.612975591598039,0,0,0,0,0,0.300091096084402,0.103052529238439,0,0,0.337552664482532,0,0,0,0,0.355009592516614,0,0.169560592310488,0,0,0,0.609868530647977,0.530119073285941,0.348581828608555,0.518305275076852,0.252320850875628,1.09493207722749,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.343135620597051,0.109750285408626,1.1240175325762,0.502644862058154,0.277765335475589,0,0,0,0,0.117408694235822,0,0,0,2.37061319387782,0,0,0,0,0,0,0.283550194484773,2.68675568108545,1.74380363108377,0.766765358330422,0,0,0,0,0,0.190493682876507,0,0,0,0,0,0,0,0,0.22001485746285,0.646358578788889,0,0,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0,0,0,0,0,1.58390374586686,0,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0.224170287987055,0,0,0,0.508189248444927,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0.271265023699736,0,0,0,0.234282829985426,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,1.54209693802656,0.355123450626254,0.739144404124282,0,1.16210378459959,0,0.200506470303285,0,0.114814448164607,0.182091168006717,0,0,0.0770153371044148,0.784349769176855,0,0.105551628892876,0,0,0,0,0,0,0,0,0.671624264166535,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0.308097234229289,0.460511024178389,1.24052915236078,0,0.435050081742686,0.0852266274161009,0,0.165284915360978,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0.179872457583315,0,0.235624804691373,0,0,1.68503382495592,0,0,0,0,0.14140543195371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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C513 | |||
|description=CAGE_peak_at_chr1:150254401..150254408,- | |||
|id=chr1:150254401..150254408,- | |||
|ontology_enrichment_celltype=CL:0000066!1.25e-09!254;CL:0002321!1.66e-09!248;CL:0002202!2.51e-09!9;CL:0002632!2.51e-09!9;CL:0000220!6.36e-09!246;CL:0002368!8.61e-09!13;CL:0000221!1.09e-07!71;CL:0000133!3.06e-07!59;CL:0002076!3.35e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002202;2.65e-18;9!CL:0002632;2.65e-18;9!CL:0002368;2.46e-12;13!CL:0002328;3.21e-11;3!CL:0000082;7.02e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,1.64e-18,9;CL:0002632,1.64e-18,9;CL:0002368,1.78e-12,13;CL:0002328,2.59e-11,3;CL:0002076,4.12e-09,42;CL:0000082,4.63e-08,19;CL:0000223,5.25e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!3.29e-17!143;DOID:14566!8.01e-14!239;DOID:162!1.26e-13!235;DOID:305!1.52e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:299;1.62e-11;25!DOID:1909;3.79e-08;2!DOID:3910;1.94e-07;2!DOID:4929;1.94e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,3.49e-17,143;DOID:299,2.32e-11,25;DOID:162,2.34e-11,235;DOID:14566,6.18e-11,239;DOID:305,9.71e-10,106;DOID:1909,3.20e-08,2;DOID:3910,1.27e-07,2;DOID:4929,4.00e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005153!6.17e-08!37;UBERON:0005157!9.10e-07!51 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;3.21e-11;3!UBERON:0002031;3.21e-11;3!UBERON:0007196;1.52e-10;15!UBERON:0001558;1.52e-10;15!UBERON:0000485;4.66e-08;7!UBERON:0004802;7.02e-08;19!UBERON:0000115;7.02e-08;19!UBERON:0004903;1.94e-07;2!UBERON:0002173;1.94e-07;2!UBERON:0002186;1.94e-07;2!UBERON:0002185;7.05e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.59e-11,3;UBERON:0002031,2.59e-11,3;UBERON:0007196,1.15e-10,15;UBERON:0001558,1.15e-10,15;UBERON:0005157,2.92e-09,47;UBERON:0000485,3.35e-09,9;UBERON:0005153,6.20e-09,37;UBERON:0004802,4.63e-08,19;UBERON:0000115,4.63e-08,19;UBERON:0004903,1.27e-07,2;UBERON:0002173,1.27e-07,2;UBERON:0002186,1.27e-07,2;UBERON:0002185,6.23e-07,5;UBERON:0002048,8.08e-07,22;UBERON:0000117,8.08e-07,22;UBERON:0000171,8.08e-07,22;UBERON:0000170,8.08e-07,22;UBERON:0005597,8.08e-07,22;UBERON:0000118,8.08e-07,22;UBERON:0005178,8.42e-07,34;UBERON:0002224,8.42e-07,34 | |||
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| |||
|short_description=p@chr1:150254401..150254408,- | |||
}} |
Revision as of 00:13, 12 September 2013
Short description: | p@chr1:150254401..150254408, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:150254401..150254408, - |
Coexpression cluster: | C513_Tracheal_Bronchial_squamous_bronchial_Small_oral_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 1.64e-18 | 9 |
epithelial cell of lower respiratory tract | 1.64e-18 | 9 |
respiratory epithelial cell | 1.78e-12 | 13 |
bronchial epithelial cell | 2.59e-11 | 3 |
endo-epithelial cell | 4.12e-09 | 42 |
epithelial cell of lung | 4.63e-08 | 19 |
endodermal cell | 5.25e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.59e-11 | 3 |
epithelium of bronchus | 2.59e-11 | 3 |
tracheobronchial tree | 1.15e-10 | 15 |
lower respiratory tract | 1.15e-10 | 15 |
epithelial fold | 2.92e-09 | 47 |
simple columnar epithelium | 3.35e-09 | 9 |
epithelial bud | 6.20e-09 | 37 |
respiratory tract epithelium | 4.63e-08 | 19 |
lung epithelium | 4.63e-08 | 19 |
bronchoalveolar duct junction | 1.27e-07 | 2 |
alveolar duct | 1.27e-07 | 2 |
bronchiole | 1.27e-07 | 2 |
bronchus | 6.23e-07 | 5 |
lung | 8.08e-07 | 22 |
respiratory tube | 8.08e-07 | 22 |
respiration organ | 8.08e-07 | 22 |
pair of lungs | 8.08e-07 | 22 |
lung primordium | 8.08e-07 | 22 |
lung bud | 8.08e-07 | 22 |
thoracic cavity element | 8.42e-07 | 34 |
thoracic cavity | 8.42e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 3.49e-17 | 143 |
adenocarcinoma | 2.32e-11 | 25 |
cancer | 2.34e-11 | 235 |
disease of cellular proliferation | 6.18e-11 | 239 |
carcinoma | 9.71e-10 | 106 |
melanoma | 3.20e-08 | 2 |
lung adenocarcinoma | 1.27e-07 | 2 |
tubular adenocarcinoma | 4.00e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.