FFCP PHASE1:Hg19::chr22:37257098..37257115,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4689|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7662|TSSclassifier=S|UniProt=Q15080,A8K4F9,B0QY04|association_with_transcript=68bp_to_ENST00000248899,ENST00000397147,ENST00000447071,NM_000631,NM_013416,uc003apy.3,uc003apz.3_5end|coexpression_cluster_id=C2643|description=CAGE_peak_3_at_NCF4_5end|id=chr22:37257098..37257115,+|ontology_enrichment_celltype=CL:0000037!7.25e-66!172;CL:0000566!7.25e-66!172;CL:0000763!3.55e-64!112;CL:0000049!3.55e-64!112;CL:0000988!1.25e-62!182;CL:0002032!3.14e-62!165;CL:0000837!3.14e-62!165;CL:0000738!6.55e-49!140;CL:0000766!2.42e-45!76;CL:0000557!1.13e-40!71;CL:0000839!4.83e-39!70;CL:0002009!5.95e-39!65;CL:0002031!2.40e-38!124;CL:0002194!4.24e-37!63;CL:0000576!4.24e-37!63;CL:0000040!4.24e-37!63;CL:0000559!4.24e-37!63;CL:0002087!4.15e-36!119;CL:0002057!2.75e-31!42;CL:0000860!5.44e-28!45;CL:0000134!6.67e-11!358;CL:0002320!5.47e-10!365;CL:0000451!2.40e-09!10;CL:0000094!2.92e-08!8;CL:0000990!1.26e-07!8;CL:0000219!5.89e-07!390|ontology_enrichment_celltype_v019=CL:0000860;1.68e-35;33!CL:0002057;1.68e-35;33!CL:0000473;2.95e-35;39!CL:0000234;2.95e-35;39!CL:0000576;6.73e-30;48!CL:0000763;1.88e-26;100!CL:0000766;7.28e-25;69!CL:0000738;3.02e-14;136!CL:0000988;3.93e-14;177!CL:0000451;1.27e-12;10!CL:0002087;1.84e-12;104!CL:0000094;3.48e-11;8!CL:0000990;3.74e-10;8!CL:0000235;3.19e-08;6!CL:0000840;8.41e-08;5!CL:0000081;1.38e-07;11|ontology_enrichment_celltype_v019_2=CL:0000763,6.37e-92,108;CL:0000049,6.37e-92,108;CL:0000037,1.75e-83,168;CL:0002032,1.56e-79,161;CL:0000837,1.56e-79,161;CL:0000988,1.99e-77,177;CL:0000766,6.86e-65,72;CL:0000738,8.83e-60,136;CL:0000557,4.11e-58,67;CL:0002009,2.65e-57,61;CL:0002194,1.35e-54,59;CL:0000576,1.35e-54,59;CL:0000040,1.35e-54,59;CL:0000559,1.35e-54,59;CL:0000839,2.75e-54,66;CL:0000473,1.54e-46,48;CL:0000234,1.54e-46,48;CL:0002031,3.28e-46,120;CL:0002087,4.59e-43,115;CL:0000860,1.32e-39,42;CL:0002057,1.32e-39,42;CL:0000134,4.49e-22,354;CL:0002320,5.23e-21,361;CL:0000219,2.72e-17,386;CL:0000034,6.38e-13,441;CL:0000048,7.40e-13,427;CL:0000451,9.97e-13,10;CL:0000723,2.93e-12,433;CL:0000094,3.57e-11,8;CL:0000990,2.89e-10,8;CL:0000235,3.04e-08,6;CL:0000840,6.05e-08,5;CL:0001029,6.05e-08,5;CL:0000081,1.40e-07,11|ontology_enrichment_development_v019=CL:0002057;7.82e-29;42!CL:0000049;3.40e-25;108|ontology_enrichment_disease=DOID:1240!3.52e-15!39;DOID:2531!6.62e-15!51;DOID:0060083!6.62e-15!51;DOID:8692!1.24e-14!31|ontology_enrichment_disease_v019=DOID:8692;9.66e-21;31!DOID:1240;6.88e-17;39!DOID:2531;1.12e-11;51!DOID:0060083;1.12e-11;51|ontology_enrichment_disease_v019_2=DOID:1240,6.85e-22,39;DOID:8692,1.11e-21,31;DOID:2531,2.31e-18,51;DOID:0060083,2.31e-18,51|ontology_enrichment_uberon=UBERON:0002390!8.68e-49!102;UBERON:0003061!8.68e-49!102;UBERON:0002193!4.98e-44!112;UBERON:0002371!1.67e-35!80;UBERON:0001474!3.61e-31!86;UBERON:0002405!3.62e-26!115;UBERON:0004765!9.43e-23!101;UBERON:0001434!9.43e-23!101;UBERON:0007023!5.59e-19!115;UBERON:0003081!7.29e-13!216;UBERON:0000178!7.74e-12!15;UBERON:0000179!7.74e-12!15;UBERON:0000463!7.74e-12!15;UBERON:0002384!4.18e-09!375;UBERON:0002204!9.64e-08!167|ontology_enrichment_uberon_v019=UBERON:0000178;3.98e-10;15!UBERON:0000179;3.98e-10;15!UBERON:0000463;3.98e-10;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,8.87e-60,98;UBERON:0003061,8.87e-60,98;UBERON:0002193,2.96e-55,108;UBERON:0002371,1.74e-50,76;UBERON:0002405,2.42e-45,93;UBERON:0001474,2.76e-45,82;UBERON:0004765,1.92e-39,90;UBERON:0001434,1.75e-33,100;UBERON:0002384,1.46e-19,371;UBERON:0003081,2.22e-19,203;UBERON:0002204,3.12e-13,167;UBERON:0000178,4.21e-10,15;UBERON:0000179,4.21e-10,15;UBERON:0000463,4.21e-10,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,7.48851376329922,8.12795835554463,6.0607301611533,7.08055698328027,1.91914699048606,2.01260960310899,0,0,0,0.619737604642413,0,1.46800219667424,2.76997704265939,1.80490002723128,2.38711957787437,19.4806462588734,11.9840656427022,16.4848363285879,6.39752250630085,7.935394817465,11.6440349370152,6.0431549595478,6.16751832032739,7.12324653058738,29.9200088015036,26.6407134790265,33.5804766441791,2.41321976515633,2.5819387343353,10.8341189275473,8.47090527941721,9.00590295190891,8.98893937780339,7.34601341690166,10.269728866435,11.5080682643827,56.7344236321152,49.6664507477863,46.4584978080637,6.67481248845743,3.40431134814684,4.9825779919646,17.587406567972,16.1659704710262,26.7142278987293,1.81619850790011,4.78760926783834,7.59509729858123,2.5350634357433,2.12604299965044,1.67726916406701,6.06574608191074,3.00353785683013,2.08943262706204,0.285012743741249,0.19891667719909,0.365328307529268,0,1.09227722252426,0,0.853460445133014,0,1.14950487990897,1.98313461835459,0,0.569212969109448,2.34894875748376,0.382273228125229,2.64342657158052,1.68152568894461,2.63384084775077,0,0,0,4.68122187093899,0,0,0,4.90206010294764,0.294605907474837,0.443067789167242,0,2.30564375506215,3.90178042679635,2.79544437826249,3.5925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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4689 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7662 | |||
|TSSclassifier=S | |||
|UniProt=Q15080,A8K4F9,B0QY04 | |||
|association_with_transcript=68bp_to_ENST00000248899,ENST00000397147,ENST00000447071,NM_000631,NM_013416,uc003apy.3,uc003apz.3_5end | |||
|coexpression_cluster_id=C2643 | |||
|description=CAGE_peak_3_at_NCF4_5end | |||
|id=chr22:37257098..37257115,+ | |||
|ontology_enrichment_celltype=CL:0000037!7.25e-66!172;CL:0000566!7.25e-66!172;CL:0000763!3.55e-64!112;CL:0000049!3.55e-64!112;CL:0000988!1.25e-62!182;CL:0002032!3.14e-62!165;CL:0000837!3.14e-62!165;CL:0000738!6.55e-49!140;CL:0000766!2.42e-45!76;CL:0000557!1.13e-40!71;CL:0000839!4.83e-39!70;CL:0002009!5.95e-39!65;CL:0002031!2.40e-38!124;CL:0002194!4.24e-37!63;CL:0000576!4.24e-37!63;CL:0000040!4.24e-37!63;CL:0000559!4.24e-37!63;CL:0002087!4.15e-36!119;CL:0002057!2.75e-31!42;CL:0000860!5.44e-28!45;CL:0000134!6.67e-11!358;CL:0002320!5.47e-10!365;CL:0000451!2.40e-09!10;CL:0000094!2.92e-08!8;CL:0000990!1.26e-07!8;CL:0000219!5.89e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.68e-35;33!CL:0002057;1.68e-35;33!CL:0000473;2.95e-35;39!CL:0000234;2.95e-35;39!CL:0000576;6.73e-30;48!CL:0000763;1.88e-26;100!CL:0000766;7.28e-25;69!CL:0000738;3.02e-14;136!CL:0000988;3.93e-14;177!CL:0000451;1.27e-12;10!CL:0002087;1.84e-12;104!CL:0000094;3.48e-11;8!CL:0000990;3.74e-10;8!CL:0000235;3.19e-08;6!CL:0000840;8.41e-08;5!CL:0000081;1.38e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,6.37e-92,108;CL:0000049,6.37e-92,108;CL:0000037,1.75e-83,168;CL:0002032,1.56e-79,161;CL:0000837,1.56e-79,161;CL:0000988,1.99e-77,177;CL:0000766,6.86e-65,72;CL:0000738,8.83e-60,136;CL:0000557,4.11e-58,67;CL:0002009,2.65e-57,61;CL:0002194,1.35e-54,59;CL:0000576,1.35e-54,59;CL:0000040,1.35e-54,59;CL:0000559,1.35e-54,59;CL:0000839,2.75e-54,66;CL:0000473,1.54e-46,48;CL:0000234,1.54e-46,48;CL:0002031,3.28e-46,120;CL:0002087,4.59e-43,115;CL:0000860,1.32e-39,42;CL:0002057,1.32e-39,42;CL:0000134,4.49e-22,354;CL:0002320,5.23e-21,361;CL:0000219,2.72e-17,386;CL:0000034,6.38e-13,441;CL:0000048,7.40e-13,427;CL:0000451,9.97e-13,10;CL:0000723,2.93e-12,433;CL:0000094,3.57e-11,8;CL:0000990,2.89e-10,8;CL:0000235,3.04e-08,6;CL:0000840,6.05e-08,5;CL:0001029,6.05e-08,5;CL:0000081,1.40e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;7.82e-29;42!CL:0000049;3.40e-25;108 | |||
|ontology_enrichment_disease=DOID:1240!3.52e-15!39;DOID:2531!6.62e-15!51;DOID:0060083!6.62e-15!51;DOID:8692!1.24e-14!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;9.66e-21;31!DOID:1240;6.88e-17;39!DOID:2531;1.12e-11;51!DOID:0060083;1.12e-11;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,6.85e-22,39;DOID:8692,1.11e-21,31;DOID:2531,2.31e-18,51;DOID:0060083,2.31e-18,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!8.68e-49!102;UBERON:0003061!8.68e-49!102;UBERON:0002193!4.98e-44!112;UBERON:0002371!1.67e-35!80;UBERON:0001474!3.61e-31!86;UBERON:0002405!3.62e-26!115;UBERON:0004765!9.43e-23!101;UBERON:0001434!9.43e-23!101;UBERON:0007023!5.59e-19!115;UBERON:0003081!7.29e-13!216;UBERON:0000178!7.74e-12!15;UBERON:0000179!7.74e-12!15;UBERON:0000463!7.74e-12!15;UBERON:0002384!4.18e-09!375;UBERON:0002204!9.64e-08!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.98e-10;15!UBERON:0000179;3.98e-10;15!UBERON:0000463;3.98e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,8.87e-60,98;UBERON:0003061,8.87e-60,98;UBERON:0002193,2.96e-55,108;UBERON:0002371,1.74e-50,76;UBERON:0002405,2.42e-45,93;UBERON:0001474,2.76e-45,82;UBERON:0004765,1.92e-39,90;UBERON:0001434,1.75e-33,100;UBERON:0002384,1.46e-19,371;UBERON:0003081,2.22e-19,203;UBERON:0002204,3.12e-13,167;UBERON:0000178,4.21e-10,15;UBERON:0000179,4.21e-10,15;UBERON:0000463,4.21e-10,15 | |||
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| |||
|short_description=p3@NCF4 | |||
}} |
Revision as of 11:48, 12 September 2013
Short description: | p3@NCF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NCF4_5end |
Coexpression cluster: | C2643_Eosinophils_acute_Neutrophils_CD14_Whole_Monocytederived_Macrophage |
Association with transcript: | 68bp_to_ENST00000248899, ENST00000397147, ENST00000447071, NM_000631, NM_013416, uc003apy.3, uc003apz.3_5end |
EntrezGene: | NCF4 |
HGNC: | 7662 |
UniProt: | Q15080A8K4F9B0QY04 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 8.87e-60 | 98 |
blood island | 8.87e-60 | 98 |
hemolymphoid system | 2.96e-55 | 108 |
bone marrow | 1.74e-50 | 76 |
immune system | 2.42e-45 | 93 |
bone element | 2.76e-45 | 82 |
skeletal element | 1.92e-39 | 90 |
skeletal system | 1.75e-33 | 100 |
connective tissue | 1.46e-19 | 371 |
lateral plate mesoderm | 2.22e-19 | 203 |
musculoskeletal system | 3.12e-13 | 167 |
blood | 4.21e-10 | 15 |
haemolymphatic fluid | 4.21e-10 | 15 |
organism substance | 4.21e-10 | 15 |
Ontology term | p-value | n |
---|---|---|
leukemia | 6.85e-22 | 39 |
myeloid leukemia | 1.11e-21 | 31 |
hematologic cancer | 2.31e-18 | 51 |
immune system cancer | 2.31e-18 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.