FFCP PHASE1:Mm9::chr12:119540395..119540415,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20688|HGNC=|MCL_coexpression_id=7|UniProt=Q62445,Q6DFV2|association_with_transcript=-482bp_to_ENSMUST00000026367,NM_001166385,NM_009239,uc007pif.2,uc011yvt.1_5end|description=CAGE_peak_5_at_Sp4_5end|id=chr12:119540395..119540415,-|ontology_enrichment_celltype=CL:0000791!2.78e-07!9;CL:0000789!2.78e-07!9;CL:0002420!2.78e-07!9;CL:0002419!2.78e-07!9;CL:0000790!2.78e-07!9|ontology_enrichment_celltype_v019_2=CL:0000791,1.69e-11,9;CL:0000789,1.69e-11,9;CL:0002420,1.69e-11,9;CL:0002419,1.69e-11,9;CL:0000790,1.69e-11,9;CL:0000624,2.39e-10,8;CL:0000838,1.12e-09,12;CL:0000084,7.09e-09,11;CL:0000827,7.09e-09,11;CL:0000542,1.10e-08,13;CL:0000051,1.10e-08,13;CL:0000893,4.10e-08,6;CL:0002489,4.10e-08,6;CL:0000898,4.10e-08,6;CL:0000809,4.10e-08,6;CL:0000810,4.10e-08,6;CL:0000895,4.10e-08,6;CL:0000808,4.10e-08,6;CL:0000894,4.10e-08,6;CL:0000806,4.10e-08,6;CL:0000807,4.10e-08,6;CL:0000805,4.10e-08,6;CL:0002425,4.10e-08,6;CL:0002436,4.10e-08,6;CL:0002427,4.10e-08,6;CL:0002428,4.10e-08,6;CL:0002429,4.10e-08,6;CL:0002433,4.10e-08,6;CL:0002431,4.10e-08,6;CL:0002432,4.10e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000970,3.84e-07,9;UBERON:0000019,3.84e-07,9;UBERON:0000047,3.84e-07,9;UBERON:0010312,3.84e-07,9;UBERON:0004088,3.84e-07,9;UBERON:0002104,3.84e-07,9;UBERON:0001456,3.84e-07,9;UBERON:0003072,3.84e-07,9;UBERON:0004128,3.84e-07,9;UBERON:0003071,3.84e-07,9|phase1_expression=0.480446541314382,0.348975407639361,0,1.20985684522732,0.500895729946347,1.84667199103079,0.934450562382103,4.77756296733832,29.2840542075467,22.0020654742674,2.56826952338257,1.91453181588807,5.82082481766099,3.4093956943409,0.666219523631325,1.01237633694913,2.79824751251259,0.473193248037357,0.822686601634433,0.84877930359606,0.765389611359628,0.198581902401771,0,0,0,1.14846392823004,1.29228598847722,1.07735616342945,0,0,0.221730510655305,3.17515336729816,0,0,2.3108129580102,0.332469290716985,3.06254034393554,1.25559489221072,1.5626706890476,0.523523743973798,2.94115744015507,1.36609096991689,0.971020706062307,0.125896817975577,0,0,0,0,0,0.194429899074283,0.279972843250725,0,1.8456086666351,2.90144856804538,4.03312558970957,0,0.286533439938757,0,1.21389876515759,0.528990979272033,1.26766280701236,0,0,0,0,0,0,0,1.03689612308478,0.945041568321835,1.89292465216244,0.571301968807607,0.441737081903227,1.46988959057945,1.91690942036473,0.919218786610021,0,0.383062014255563,0,1.45074916503213,0.914876436024097,1.56274011167028,0,0,0.61119299110724,0,0.569486723196412,1.1183966749518,0.37863096666592,0.604572480854284,14.4932244350839,0.860423876981386,0,0.539703191637817,0.649776417447669,0.448026887097336,0.280888840263504,0.170430322578058,0,0,0.563373679106722,0,0,0,0,0,0.505524445014783,0.34255163915718,0.258937883647172,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0,0,0,0.289198713839823,0,0.485300549842228,0.441683036920787,0,0,2.34224637609238,1.67557365450764,0,0.838705871541442,1.79970819298022,1.01656181658452,0.449371918214468,0.457500602818626,0.628271760564322,0.695297280769106,0.767146371990992,0.62336413367868,0.162241263067758,0,0.373220911830279,0,0.841767423545896,1.30120442962704,2.06911893990126,1.62055916824814,1.80845781402858,2.17716797284249,2.69038812598185,2.24884138943349,2.58703370739016,1.5089759505299,1.70195472151037,0.879755620819744,0.43839146485515,1.39023624612799,1.39300866608867,0.205782136407943,0.59710280045548,0.702213187313235,0.772043721344145,0,0.414251545071004,0.703578179943289,0.180062061461015,0.473489471170421,0.196764231747404,0.462801338662135,0.697601834251224,0.268273401399619,0.350296027101508,0,0.32833492815819,0.324275238183423,0.438599962275997,0,0,0.420579897128254,1.23485534855141,0,0,0.426576501070468,0.232236671860439,0.128867461322093,0.605050573870028,0.22237804384487,0.380451252225118,0,0.164698954724011,0.502670417600539,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.758671603812327,0.685491075658373,1.1270773567308,0,0.387904974335251,0.49095073923223,0.505892296994058,0.442830443938806,0.627994911365499,0.370191491765402,1.48226313543574,1.33476084572875,2.16214894624523,1.57403478669398,0.405720242777006,0.72353147925725,0.50925170356284,0.575392274901621,0.648540907100142,1.37280706594041,2.87536413054709,0.744281895337007,1.5601883655728,1.26289438973556,0.717589654087649,1.4473305640901,0.369506380333209,0.757965647081939,1.14075483509418,0.509235257325564,0.234690248288502,0.502518772325447,0.714130922658041,0.390267295715598,0.315270288212382,0.44292937929755,0.159454768657487,0.491589944147214,0,0.867894351489069,0,0,0,0,0.642202359951168,0.586058432961016,0,0.504941854408746,0.315508219416257,0.390438744296638,0.215423397732799,0.477937595905104,0.222798674082394,0,1.21443210502468,1.16902343164525,0.395287777946524,2.89189184779626,0.141940085208269,0.178065603667255,0.488660878060728,0.164970122972535,1.32745138339963,0.971122544619926,0,0.1886050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| ||
|EntrezGene=20688 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|UniProt=Q62445,Q6DFV2 | |||
|association_with_transcript=-482bp_to_ENSMUST00000026367,NM_001166385,NM_009239,uc007pif.2,uc011yvt.1_5end | |||
|description=CAGE_peak_5_at_Sp4_5end | |||
|id=chr12:119540395..119540415,- | |||
|ontology_enrichment_celltype=CL:0000791!2.78e-07!9;CL:0000789!2.78e-07!9;CL:0002420!2.78e-07!9;CL:0002419!2.78e-07!9;CL:0000790!2.78e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.69e-11,9;CL:0000789,1.69e-11,9;CL:0002420,1.69e-11,9;CL:0002419,1.69e-11,9;CL:0000790,1.69e-11,9;CL:0000624,2.39e-10,8;CL:0000838,1.12e-09,12;CL:0000084,7.09e-09,11;CL:0000827,7.09e-09,11;CL:0000542,1.10e-08,13;CL:0000051,1.10e-08,13;CL:0000893,4.10e-08,6;CL:0002489,4.10e-08,6;CL:0000898,4.10e-08,6;CL:0000809,4.10e-08,6;CL:0000810,4.10e-08,6;CL:0000895,4.10e-08,6;CL:0000808,4.10e-08,6;CL:0000894,4.10e-08,6;CL:0000806,4.10e-08,6;CL:0000807,4.10e-08,6;CL:0000805,4.10e-08,6;CL:0002425,4.10e-08,6;CL:0002436,4.10e-08,6;CL:0002427,4.10e-08,6;CL:0002428,4.10e-08,6;CL:0002429,4.10e-08,6;CL:0002433,4.10e-08,6;CL:0002431,4.10e-08,6;CL:0002432,4.10e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,3.84e-07,9;UBERON:0000019,3.84e-07,9;UBERON:0000047,3.84e-07,9;UBERON:0010312,3.84e-07,9;UBERON:0004088,3.84e-07,9;UBERON:0002104,3.84e-07,9;UBERON:0001456,3.84e-07,9;UBERON:0003072,3.84e-07,9;UBERON:0004128,3.84e-07,9;UBERON:0003071,3.84e-07,9 | |||
|phase1_expression=0.480446541314382,0.348975407639361,0,1.20985684522732,0.500895729946347,1.84667199103079,0.934450562382103,4.77756296733832,29.2840542075467,22.0020654742674,2.56826952338257,1.91453181588807,5.82082481766099,3.4093956943409,0.666219523631325,1.01237633694913,2.79824751251259,0.473193248037357,0.822686601634433,0.84877930359606,0.765389611359628,0.198581902401771,0,0,0,1.14846392823004,1.29228598847722,1.07735616342945,0,0,0.221730510655305,3.17515336729816,0,0,2.3108129580102,0.332469290716985,3.06254034393554,1.25559489221072,1.5626706890476,0.523523743973798,2.94115744015507,1.36609096991689,0.971020706062307,0.125896817975577,0,0,0,0,0,0.194429899074283,0.279972843250725,0,1.8456086666351,2.90144856804538,4.03312558970957,0,0.286533439938757,0,1.21389876515759,0.528990979272033,1.26766280701236,0,0,0,0,0,0,0,1.03689612308478,0.945041568321835,1.89292465216244,0.571301968807607,0.441737081903227,1.46988959057945,1.91690942036473,0.919218786610021,0,0.383062014255563,0,1.45074916503213,0.914876436024097,1.56274011167028,0,0,0.61119299110724,0,0.569486723196412,1.1183966749518,0.37863096666592,0.604572480854284,14.4932244350839,0.860423876981386,0,0.539703191637817,0.649776417447669,0.448026887097336,0.280888840263504,0.170430322578058,0,0,0.563373679106722,0,0,0,0,0,0.505524445014783,0.34255163915718,0.258937883647172,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0,0,0,0.289198713839823,0,0.485300549842228,0.441683036920787,0,0,2.34224637609238,1.67557365450764,0,0.838705871541442,1.79970819298022,1.01656181658452,0.449371918214468,0.457500602818626,0.628271760564322,0.695297280769106,0.767146371990992,0.62336413367868,0.162241263067758,0,0.373220911830279,0,0.841767423545896,1.30120442962704,2.06911893990126,1.62055916824814,1.80845781402858,2.17716797284249,2.69038812598185,2.24884138943349,2.58703370739016,1.5089759505299,1.70195472151037,0.879755620819744,0.43839146485515,1.39023624612799,1.39300866608867,0.205782136407943,0.59710280045548,0.702213187313235,0.772043721344145,0,0.414251545071004,0.703578179943289,0.180062061461015,0.473489471170421,0.196764231747404,0.462801338662135,0.697601834251224,0.268273401399619,0.350296027101508,0,0.32833492815819,0.324275238183423,0.438599962275997,0,0,0.420579897128254,1.23485534855141,0,0,0.426576501070468,0.232236671860439,0.128867461322093,0.605050573870028,0.22237804384487,0.380451252225118,0,0.164698954724011,0.502670417600539,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.758671603812327,0.685491075658373,1.1270773567308,0,0.387904974335251,0.49095073923223,0.505892296994058,0.442830443938806,0.627994911365499,0.370191491765402,1.48226313543574,1.33476084572875,2.16214894624523,1.57403478669398,0.405720242777006,0.72353147925725,0.50925170356284,0.575392274901621,0.648540907100142,1.37280706594041,2.87536413054709,0.744281895337007,1.5601883655728,1.26289438973556,0.717589654087649,1.4473305640901,0.369506380333209,0.757965647081939,1.14075483509418,0.509235257325564,0.234690248288502,0.502518772325447,0.714130922658041,0.390267295715598,0.315270288212382,0.44292937929755,0.159454768657487,0.491589944147214,0,0.867894351489069,0,0,0,0,0.642202359951168,0.586058432961016,0,0.504941854408746,0.315508219416257,0.390438744296638,0.215423397732799,0.477937595905104,0.222798674082394,0,1.21443210502468,1.16902343164525,0.395287777946524,2.89189184779626,0.141940085208269,0.178065603667255,0.488660878060728,0.164970122972535,1.32745138339963,0.971122544619926,0,0.188605079755898,0,0,0.258428293168221,0,0,0.316036757935816,0,0,0,1.44048875225048,0.258717367565509,0.214337035031592,0.354680467284547,0.178368817602071,0.164549020602121,0,0.23467170806371,0,0.882113592219848,0.16488625294148,0.161464426695906,0.301564624640779,0.477489376012546,0.328281799490123,0,0.741701208042039,1.19609616558497,0.82554747185289,0.925972636848558,1.31857919903284,1.77702496037333,0.686334519619568,0.849892149969277,1.53946597556024,2.48759952847963,0,0.632671987162271,0.406638934253697,0.432021363287205,0.209088296014469,0.218362563746178,0.539457385539283,0.330613822901344,0,0.129614973291793,0,1.12738587736838,0.897099276263873,0.827292452285488,1.16670713006429,1.16243841129958,1.85851738039856,0.469428954583016,0.651021924219751,3.25063967719704,2.89900944991207,2.59227005632079,0.632022241256357,1.01362607645082,0.513554785824136,1.94881234466693,0.537080087002444,0.993406773906324,0.240390899039938,0.590758108698309,0.605798699688886,0.762068066549998,0.302478555410522,0.38983152295901,0.769694733122636,0.467507608726276,0,2.44184548711471,5.02397597013064,1.84673078000486,0.19318959403219,0.187682475451182,0.36630324853453,0,0,0,0.920650473014354,2.29158205375759,0.859265911718438,1.37016503954128,0,0.675022500231806,0.900642406448441,0.906284817968409,0,1.03787347584177,1.59609949360412,1.19513524027894,0.729320151204882,1.25767897576789,0.551530525350042,0.666740183404846,0.412070114477788,1.60459604795908,0.505394423527595,0.760437899670719,0.188626341386076,0.37456602987953,0.512201219238954,0.631790158511746,1.90517476513229,0.579421629724277,0.38581844092741,0,0.441596760403192,0.342869252385415,0.70990322463735,0.476872379894642,0.581385666529314,0.376437521661322,0.423073039458382,0,0.526139422875686,0.407412341537585,1.12228454331548,0.711810108745045,0.492522411877817,0.409231043169689,0.309873682371932,0.578719832943424,0.999242311751784,1.16965804222704,0.429742108096597,0,0.882365676478062,0.231867835620421 | |||
|short_description=p5@Sp4 | |||
}} | |||
Revision as of 22:31, 12 September 2013
| Short description: | p5@Sp4 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_5_at_Sp4_5end |
| Coexpression cluster: | MCL_coexpression_mm9:7 |
| Association with transcript: | -482bp_to_ENSMUST00000026367, NM_001166385, NM_009239, uc007pif.2, uc011yvt.1_5end |
| EntrezGene: | Sp4 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| eye | 3.84e-07 | 9 |
| camera-type eye | 3.84e-07 | 9 |
| simple eye | 3.84e-07 | 9 |
| immature eye | 3.84e-07 | 9 |
| ocular region | 3.84e-07 | 9 |
| visual system | 3.84e-07 | 9 |
| face | 3.84e-07 | 9 |
| optic cup | 3.84e-07 | 9 |
| optic vesicle | 3.84e-07 | 9 |
| eye primordium | 3.84e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
