FFCP PHASE1:Mm9::chr18:76400957..76400968,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17126|HGNC=|UniProt=Q62432|association_with_transcript=-265bp_to_ENSMUST00000168423_5end|description=CAGE_peak_12_at_Smad2_5end|id=chr18:76400957..76400968,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000068,5.46e-07,3;CL:0002202,5.46e-07,3;CL:0000069,5.46e-07,3;CL:0002632,5.46e-07,3;CL:0002368,5.46e-07,3;CL:0000307,5.46e-07,3;CL:0000377,5.46e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000970,7.02e-09,9;UBERON:0000019,7.02e-09,9;UBERON:0000047,7.02e-09,9;UBERON:0010312,7.02e-09,9;UBERON:0004088,7.02e-09,9;UBERON:0002104,7.02e-09,9;UBERON:0001456,7.02e-09,9;UBERON:0003072,7.02e-09,9;UBERON:0004128,7.02e-09,9;UBERON:0003071,7.02e-09,9;UBERON:0001444,1.94e-07,11;UBERON:0003126,5.46e-07,3;UBERON:0001005,5.46e-07,3;UBERON:0007196,5.46e-07,3;UBERON:0001558,5.46e-07,3;UBERON:0000020,6.76e-07,12;UBERON:0001032,6.76e-07,12;UBERON:0004456,6.76e-07,12|phase1_expression=0,0.348975407639361,0,0,0.500895729946347,0.503637815735669,0.233612640595526,0,0.703943610758334,0.70219357896598,0.34243593645101,0.558405112967355,0.513602189793617,0,0,0.202475267389826,0,0.315462165358238,0.411343300817216,0.42438965179803,0.17008658030214,0.198581902401771,0.261199789138935,0,0,0,0,0.430942465371778,0,0.252030129759931,0,0,0.61506478758457,0,0.866554859253824,0.332469290716985,0.408338712524738,0.418531630736908,0,0,0,0,0,0,0,0,0,0,0.439372365468944,0,0,0,0.838913030288682,0,0.672187598284928,0,0,0,0.202316460859598,0,0,0,0.889294796111139,0,0,0,0,0,0.103689612308478,0.270011876663381,0.210324961351382,0,0,0,0,0,0,0,0,0.131886287730194,0.457438218012048,0,0,0,0,0,0.142371680799103,0,0.454357159999104,0.226714680320357,0,0,0,0,0,0,0,0,0.259786004602869,0.35333957451034,0.281686839553361,0,0,0,0,0.506719730950197,1.01104889002957,0.11418387971906,0,0.445326417194474,0.346970653532272,0,1.15307748628029,0.150722640552623,0.470354828542819,0.753999547978053,0.247194967734374,0.144599356919912,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0,0,0,0,0,0.20778804455956,0,0.101839363850316,0,0,0.420883711772948,0.390361328888111,1.37941262660084,0.540186389416048,0.753524089178575,0.612328492361951,0.384341160854549,1.49922759295566,0,0,0,0.175951124163949,0.43839146485515,0.834141747676794,0.696504333044333,0,0.199034266818493,0.702213187313235,0,0.284163499395593,0.414251545071004,0,0.36012412292203,0.23674473558521,0,0,0,0.268273401399619,0.116765342367169,0,0,0,0,0.439100230582101,0,0,0,0,0,0,0.232236671860439,0.128867461322093,0,0,0,0,0.658795818896044,0,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0.407302655690628,0.193952487167626,0.140271639780637,0.316182685621286,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0,0,0,0.179397413521912,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0.502518772325447,0.476087281772027,0,0,0.44292937929755,0.159454768657487,0.163863314715738,0.172684981865896,0,0,0.54390568381871,0,0.551873492609465,0,0,0,0.252470927204373,0,0.390438744296638,0.215423397732799,0.477937595905104,0,0,0,0,0,0,0.425820255624806,0.35613120733451,0.488660878060728,0.164970122972535,1.32745138339963,0,0,0,0,0,0.258428293168221,0,0,0.632073515871632,0,0,0.340439605753788,0,0.129358683782755,0,0.177340233642274,0,0.493647061806363,0,0.23467170806371,0,0,0,0,0.301564624640779,0.238744688006273,0.656563598980245,0.291480836629851,0,0.170870880797853,0.206386867963223,0.370389054739423,0.188368457004691,0,0,0.679913719975421,0.419854356970974,0.690999869022119,0,0.474503990371703,0.203319467126849,0.432021363287205,0,0.655087691238533,0.134864346384821,0.0826534557253359,0,0,0,0,0.149516546043979,0.330916980914195,0.583353565032143,0.387479470433193,0.168956125490778,0.117357238645754,0.39061315453185,0.419437377702843,0.966336483304024,0.288030006257865,0,0.405450430580328,0,0.129920822977795,0.179026695667481,0.198681354781265,0,0,0.302899349844443,0,0,0,0,0.116876902181569,0,0.221985953374065,0,0.167884616364078,0.386379188064381,0,0,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0,0,0,0,0,0.206035057238894,0,0,0,0.188626341386076,0.187283014939765,0.192075457214608,0.0574354689556133,0,0.231768651889711,0,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.0941093804153306,0.0846146078916765,0,0,0,0.561142271657738,0.118635018124174,0,0,0.154936841185966,0.192906610981141,0.249810577937946,0,0,0,0.220591419119515,0|short_description=p12@Smad2}} | ||
|EntrezGene=17126 | |||
|HGNC= | |||
|UniProt=Q62432 | |||
|association_with_transcript=-265bp_to_ENSMUST00000168423_5end | |||
|description=CAGE_peak_12_at_Smad2_5end | |||
|id=chr18:76400957..76400968,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,5.46e-07,3;CL:0002202,5.46e-07,3;CL:0000069,5.46e-07,3;CL:0002632,5.46e-07,3;CL:0002368,5.46e-07,3;CL:0000307,5.46e-07,3;CL:0000377,5.46e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,7.02e-09,9;UBERON:0000019,7.02e-09,9;UBERON:0000047,7.02e-09,9;UBERON:0010312,7.02e-09,9;UBERON:0004088,7.02e-09,9;UBERON:0002104,7.02e-09,9;UBERON:0001456,7.02e-09,9;UBERON:0003072,7.02e-09,9;UBERON:0004128,7.02e-09,9;UBERON:0003071,7.02e-09,9;UBERON:0001444,1.94e-07,11;UBERON:0003126,5.46e-07,3;UBERON:0001005,5.46e-07,3;UBERON:0007196,5.46e-07,3;UBERON:0001558,5.46e-07,3;UBERON:0000020,6.76e-07,12;UBERON:0001032,6.76e-07,12;UBERON:0004456,6.76e-07,12 | |||
|phase1_expression=0,0.348975407639361,0,0,0.500895729946347,0.503637815735669,0.233612640595526,0,0.703943610758334,0.70219357896598,0.34243593645101,0.558405112967355,0.513602189793617,0,0,0.202475267389826,0,0.315462165358238,0.411343300817216,0.42438965179803,0.17008658030214,0.198581902401771,0.261199789138935,0,0,0,0,0.430942465371778,0,0.252030129759931,0,0,0.61506478758457,0,0.866554859253824,0.332469290716985,0.408338712524738,0.418531630736908,0,0,0,0,0,0,0,0,0,0,0.439372365468944,0,0,0,0.838913030288682,0,0.672187598284928,0,0,0,0.202316460859598,0,0,0,0.889294796111139,0,0,0,0,0,0.103689612308478,0.270011876663381,0.210324961351382,0,0,0,0,0,0,0,0,0.131886287730194,0.457438218012048,0,0,0,0,0,0.142371680799103,0,0.454357159999104,0.226714680320357,0,0,0,0,0,0,0,0,0.259786004602869,0.35333957451034,0.281686839553361,0,0,0,0,0.506719730950197,1.01104889002957,0.11418387971906,0,0.445326417194474,0.346970653532272,0,1.15307748628029,0.150722640552623,0.470354828542819,0.753999547978053,0.247194967734374,0.144599356919912,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0,0,0,0,0,0.20778804455956,0,0.101839363850316,0,0,0.420883711772948,0.390361328888111,1.37941262660084,0.540186389416048,0.753524089178575,0.612328492361951,0.384341160854549,1.49922759295566,0,0,0,0.175951124163949,0.43839146485515,0.834141747676794,0.696504333044333,0,0.199034266818493,0.702213187313235,0,0.284163499395593,0.414251545071004,0,0.36012412292203,0.23674473558521,0,0,0,0.268273401399619,0.116765342367169,0,0,0,0,0.439100230582101,0,0,0,0,0,0,0.232236671860439,0.128867461322093,0,0,0,0,0.658795818896044,0,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0.407302655690628,0.193952487167626,0.140271639780637,0.316182685621286,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0,0,0,0.179397413521912,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0.502518772325447,0.476087281772027,0,0,0.44292937929755,0.159454768657487,0.163863314715738,0.172684981865896,0,0,0.54390568381871,0,0.551873492609465,0,0,0,0.252470927204373,0,0.390438744296638,0.215423397732799,0.477937595905104,0,0,0,0,0,0,0.425820255624806,0.35613120733451,0.488660878060728,0.164970122972535,1.32745138339963,0,0,0,0,0,0.258428293168221,0,0,0.632073515871632,0,0,0.340439605753788,0,0.129358683782755,0,0.177340233642274,0,0.493647061806363,0,0.23467170806371,0,0,0,0,0.301564624640779,0.238744688006273,0.656563598980245,0.291480836629851,0,0.170870880797853,0.206386867963223,0.370389054739423,0.188368457004691,0,0,0.679913719975421,0.419854356970974,0.690999869022119,0,0.474503990371703,0.203319467126849,0.432021363287205,0,0.655087691238533,0.134864346384821,0.0826534557253359,0,0,0,0,0.149516546043979,0.330916980914195,0.583353565032143,0.387479470433193,0.168956125490778,0.117357238645754,0.39061315453185,0.419437377702843,0.966336483304024,0.288030006257865,0,0.405450430580328,0,0.129920822977795,0.179026695667481,0.198681354781265,0,0,0.302899349844443,0,0,0,0,0.116876902181569,0,0.221985953374065,0,0.167884616364078,0.386379188064381,0,0,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0,0,0,0,0,0.206035057238894,0,0,0,0.188626341386076,0.187283014939765,0.192075457214608,0.0574354689556133,0,0.231768651889711,0,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.0941093804153306,0.0846146078916765,0,0,0,0.561142271657738,0.118635018124174,0,0,0.154936841185966,0.192906610981141,0.249810577937946,0,0,0,0.220591419119515,0 | |||
|short_description=p12@Smad2 | |||
}} |
Revision as of 16:46, 13 September 2013
Short description: | p12@Smad2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_Smad2_5end |
Coexpression cluster: | NA |
Association with transcript: | -265bp_to_ENSMUST00000168423_5end |
EntrezGene: | Smad2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 5.46e-07 | 3 |
epithelial cell of tracheobronchial tree | 5.46e-07 | 3 |
branched duct epithelial cell | 5.46e-07 | 3 |
epithelial cell of lower respiratory tract | 5.46e-07 | 3 |
respiratory epithelial cell | 5.46e-07 | 3 |
tracheal epithelial cell | 5.46e-07 | 3 |
tracheoblast | 5.46e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
eye | 7.02e-09 | 9 |
camera-type eye | 7.02e-09 | 9 |
simple eye | 7.02e-09 | 9 |
immature eye | 7.02e-09 | 9 |
ocular region | 7.02e-09 | 9 |
visual system | 7.02e-09 | 9 |
face | 7.02e-09 | 9 |
optic cup | 7.02e-09 | 9 |
optic vesicle | 7.02e-09 | 9 |
eye primordium | 7.02e-09 | 9 |
subdivision of head | 1.94e-07 | 11 |
trachea | 5.46e-07 | 3 |
respiratory airway | 5.46e-07 | 3 |
tracheobronchial tree | 5.46e-07 | 3 |
lower respiratory tract | 5.46e-07 | 3 |
sense organ | 6.76e-07 | 12 |
sensory system | 6.76e-07 | 12 |
entire sense organ system | 6.76e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.