FFCP PHASE1:Mm9::chr1:152240383..152240395,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=108989|HGNC=|UniProt=Q7M739|association_with_transcript=-9bp_to_ENSMUST00000119161_5end|description=CAGE_peak_4_at_Tpr_5end|id=chr1:152240383..152240395,+|ontology_enrichment_celltype=CL:0000791!4.77e-07!9;CL:0000789!4.77e-07!9;CL:0002420!4.77e-07!9;CL:0002419!4.77e-07!9;CL:0000790!4.77e-07!9|ontology_enrichment_celltype_v019_2=CL:0000791,1.11e-10,9;CL:0000789,1.11e-10,9;CL:0002420,1.11e-10,9;CL:0002419,1.11e-10,9;CL:0000790,1.11e-10,9;CL:0000624,1.28e-09,8;CL:0000084,3.38e-08,11;CL:0000827,3.38e-08,11;CL:0000893,7.31e-08,6;CL:0002489,7.31e-08,6;CL:0000898,7.31e-08,6;CL:0000809,7.31e-08,6;CL:0000810,7.31e-08,6;CL:0000895,7.31e-08,6;CL:0000808,7.31e-08,6;CL:0000894,7.31e-08,6;CL:0000806,7.31e-08,6;CL:0000807,7.31e-08,6;CL:0000805,7.31e-08,6;CL:0002425,7.31e-08,6;CL:0002436,7.31e-08,6;CL:0002427,7.31e-08,6;CL:0002428,7.31e-08,6;CL:0002429,7.31e-08,6;CL:0002433,7.31e-08,6;CL:0002431,7.31e-08,6;CL:0002432,7.31e-08,6;CL:0000838,2.81e-07,12|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!4.97e-11!29;UBERON:0002370!1.14e-09!23;UBERON:0000974!1.14e-09!23;UBERON:0004807!1.14e-09!23;UBERON:0005058!1.14e-09!23;UBERON:0003351!1.14e-09!23;UBERON:0009113!1.14e-09!23;UBERON:0003295!1.14e-09!23;UBERON:0009722!1.14e-09!23;UBERON:0005562!1.14e-09!23;UBERON:0007690!1.14e-09!23;UBERON:0005057!1.76e-09!51;UBERON:0006562!1.82e-09!24;UBERON:0001557!1.82e-09!24;UBERON:0001042!1.82e-09!24;UBERON:0008814!1.82e-09!24;UBERON:0009145!1.82e-09!24;UBERON:0000072!1.89e-09!27;UBERON:0003408!2.36e-09!24;UBERON:0001048!2.52e-09!147;UBERON:0000926!5.81e-08!193;UBERON:0004120!5.81e-08!193;UBERON:0006603!5.81e-08!193;UBERON:0000077!1.25e-07!97;UBERON:0000065!2.05e-07!41;UBERON:0001004!2.73e-07!42;UBERON:0001041!3.58e-07!92;UBERON:0003104!8.46e-07!131;UBERON:0009142!8.46e-07!131|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.66e-15,23;UBERON:0000974,4.66e-15,23;UBERON:0004807,4.66e-15,23;UBERON:0005058,4.66e-15,23;UBERON:0003351,4.66e-15,23;UBERON:0009113,4.66e-15,23;UBERON:0003295,4.66e-15,23;UBERON:0009722,4.66e-15,23;UBERON:0005562,4.66e-15,23;UBERON:0007690,4.66e-15,23;UBERON:0004177,2.23e-14,29;UBERON:0005057,2.23e-14,29;UBERON:0000072,3.57e-14,27;UBERON:0006562,3.93e-14,24;UBERON:0003408,3.93e-14,24;UBERON:0001557,3.93e-14,24;UBERON:0001042,3.93e-14,24;UBERON:0008814,3.93e-14,24;UBERON:0009145,3.93e-14,24;UBERON:0000077,1.35e-12,35;UBERON:0007811,4.43e-10,36;UBERON:0002390,4.75e-09,45;UBERON:0003061,4.75e-09,45;UBERON:0002193,4.79e-09,48;UBERON:0002405,4.79e-09,48;UBERON:0000153,8.75e-09,43;UBERON:0000065,1.58e-08,41;UBERON:0001004,3.75e-08,42;UBERON:0003929,2.29e-07,55;UBERON:0000490,6.70e-07,66;UBERON:0002368,9.03e-07,60|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.33575854382378,0.467225281191051,1.80772652818207,3.51971805379167,4.91535505276186,3.4243593645101,2.95156988282745,3.25281386869291,2.62261207256992,1.66554880907831,1.01237633694913,0,1.89277299214943,0.959801035240171,0.84877930359606,0.340173160604279,0.595745707205312,0.261199789138935,0.639969691173627,0.22940928106717,0,0.430761996159075,0.215471232685889,0.190023419456374,0,0,2.54012269383853,0,0,0.288851619751275,0.664938581433969,0.204169356262369,2.09265815368454,2.3440060335714,2.09409497589519,1.76469446409304,2.04913645487534,0.971020706062307,0.755380907853464,0.709638518536602,0.367093504323363,0.782391344348039,0,0,0,0.419959264876088,0,0.503347818173209,2.90144856804538,3.36093799142464,0.771778308107841,0.573066879877513,0,0.202316460859598,0,0,0,0,0.449949858640699,0,0,0,0.384218305321555,0.207379224616955,0.270011876663381,0,0,0,0,0.0958454710182364,0,1.10115880999389,0.383062014255563,0.153606533256243,0.131886287730194,0.0914876436024097,0.52091337055676,0.279182999001381,0,0,0.883885756421003,0.142371680799103,0.372798891650601,0.605809546665472,0.755715601067855,1.15945795480671,5.16254326188832,2.719885334831,0.539703191637817,0,0,0.842666520790511,0.852151612890289,0.519572009205738,0.35333957451034,0,1.28326477414318,2.54805239706646,0,0.432982082022428,1.01343946190039,1.51657333504435,0.68510327831436,3.88406825470758,0.445326417194474,0.867426633830679,0.913396434936424,0,0.60289056221049,0.470354828542819,0.376999773989026,1.23597483867187,0.289198713839823,0.884610551949874,0.647067399789637,1.10420759230197,1.93950101254089,0,0.585561594023094,0.628340120440365,0,0.838705871541442,1.19980546198682,0.762421362438388,0.149790639404823,0.457500602818626,0.502617408451458,0.347648640384553,0,0.41557608911912,0,0.305518091550949,0.622034853050465,0.505445516867349,0.631325567659422,1.56144531555244,1.60931473103431,0.720248519221397,0.60281927134286,0.680364991513279,0.512454881139399,0.937017245597288,1.55222022443409,0.431135985865684,0.756424320671277,0.527853372491847,0.876782929710299,1.11218899690239,0.348252166522167,1.4404749548556,0.995171334092466,0.702213187313235,0.51469581422943,0.284163499395593,1.03562886267751,1.64168241986767,0.7202482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| ||
|EntrezGene=108989 | |||
|HGNC= | |||
|UniProt=Q7M739 | |||
|association_with_transcript=-9bp_to_ENSMUST00000119161_5end | |||
|description=CAGE_peak_4_at_Tpr_5end | |||
|id=chr1:152240383..152240395,+ | |||
|ontology_enrichment_celltype=CL:0000791!4.77e-07!9;CL:0000789!4.77e-07!9;CL:0002420!4.77e-07!9;CL:0002419!4.77e-07!9;CL:0000790!4.77e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.11e-10,9;CL:0000789,1.11e-10,9;CL:0002420,1.11e-10,9;CL:0002419,1.11e-10,9;CL:0000790,1.11e-10,9;CL:0000624,1.28e-09,8;CL:0000084,3.38e-08,11;CL:0000827,3.38e-08,11;CL:0000893,7.31e-08,6;CL:0002489,7.31e-08,6;CL:0000898,7.31e-08,6;CL:0000809,7.31e-08,6;CL:0000810,7.31e-08,6;CL:0000895,7.31e-08,6;CL:0000808,7.31e-08,6;CL:0000894,7.31e-08,6;CL:0000806,7.31e-08,6;CL:0000807,7.31e-08,6;CL:0000805,7.31e-08,6;CL:0002425,7.31e-08,6;CL:0002436,7.31e-08,6;CL:0002427,7.31e-08,6;CL:0002428,7.31e-08,6;CL:0002429,7.31e-08,6;CL:0002433,7.31e-08,6;CL:0002431,7.31e-08,6;CL:0002432,7.31e-08,6;CL:0000838,2.81e-07,12 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!4.97e-11!29;UBERON:0002370!1.14e-09!23;UBERON:0000974!1.14e-09!23;UBERON:0004807!1.14e-09!23;UBERON:0005058!1.14e-09!23;UBERON:0003351!1.14e-09!23;UBERON:0009113!1.14e-09!23;UBERON:0003295!1.14e-09!23;UBERON:0009722!1.14e-09!23;UBERON:0005562!1.14e-09!23;UBERON:0007690!1.14e-09!23;UBERON:0005057!1.76e-09!51;UBERON:0006562!1.82e-09!24;UBERON:0001557!1.82e-09!24;UBERON:0001042!1.82e-09!24;UBERON:0008814!1.82e-09!24;UBERON:0009145!1.82e-09!24;UBERON:0000072!1.89e-09!27;UBERON:0003408!2.36e-09!24;UBERON:0001048!2.52e-09!147;UBERON:0000926!5.81e-08!193;UBERON:0004120!5.81e-08!193;UBERON:0006603!5.81e-08!193;UBERON:0000077!1.25e-07!97;UBERON:0000065!2.05e-07!41;UBERON:0001004!2.73e-07!42;UBERON:0001041!3.58e-07!92;UBERON:0003104!8.46e-07!131;UBERON:0009142!8.46e-07!131 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.66e-15,23;UBERON:0000974,4.66e-15,23;UBERON:0004807,4.66e-15,23;UBERON:0005058,4.66e-15,23;UBERON:0003351,4.66e-15,23;UBERON:0009113,4.66e-15,23;UBERON:0003295,4.66e-15,23;UBERON:0009722,4.66e-15,23;UBERON:0005562,4.66e-15,23;UBERON:0007690,4.66e-15,23;UBERON:0004177,2.23e-14,29;UBERON:0005057,2.23e-14,29;UBERON:0000072,3.57e-14,27;UBERON:0006562,3.93e-14,24;UBERON:0003408,3.93e-14,24;UBERON:0001557,3.93e-14,24;UBERON:0001042,3.93e-14,24;UBERON:0008814,3.93e-14,24;UBERON:0009145,3.93e-14,24;UBERON:0000077,1.35e-12,35;UBERON:0007811,4.43e-10,36;UBERON:0002390,4.75e-09,45;UBERON:0003061,4.75e-09,45;UBERON:0002193,4.79e-09,48;UBERON:0002405,4.79e-09,48;UBERON:0000153,8.75e-09,43;UBERON:0000065,1.58e-08,41;UBERON:0001004,3.75e-08,42;UBERON:0003929,2.29e-07,55;UBERON:0000490,6.70e-07,66;UBERON:0002368,9.03e-07,60 | |||
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| |||
|short_description=p4@Tpr | |||
}} |
Revision as of 19:12, 13 September 2013
Short description: | p4@Tpr |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Tpr_5end |
Coexpression cluster: | NA |
Association with transcript: | -9bp_to_ENSMUST00000119161_5end |
EntrezGene: | Tpr |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 4.66e-15 | 23 |
neck | 4.66e-15 | 23 |
respiratory system epithelium | 4.66e-15 | 23 |
hemolymphoid system gland | 4.66e-15 | 23 |
pharyngeal epithelium | 4.66e-15 | 23 |
thymic region | 4.66e-15 | 23 |
pharyngeal gland | 4.66e-15 | 23 |
entire pharyngeal arch endoderm | 4.66e-15 | 23 |
thymus primordium | 4.66e-15 | 23 |
early pharyngeal endoderm | 4.66e-15 | 23 |
hemopoietic organ | 2.23e-14 | 29 |
immune organ | 2.23e-14 | 29 |
segment of respiratory tract | 3.57e-14 | 27 |
pharynx | 3.93e-14 | 24 |
gland of gut | 3.93e-14 | 24 |
upper respiratory tract | 3.93e-14 | 24 |
chordate pharynx | 3.93e-14 | 24 |
pharyngeal arch system | 3.93e-14 | 24 |
pharyngeal region of foregut | 3.93e-14 | 24 |
mixed endoderm/mesoderm-derived structure | 1.35e-12 | 35 |
craniocervical region | 4.43e-10 | 36 |
hematopoietic system | 4.75e-09 | 45 |
blood island | 4.75e-09 | 45 |
hemolymphoid system | 4.79e-09 | 48 |
immune system | 4.79e-09 | 48 |
anterior region of body | 8.75e-09 | 43 |
respiratory tract | 1.58e-08 | 41 |
respiratory system | 3.75e-08 | 42 |
gut epithelium | 2.29e-07 | 55 |
unilaminar epithelium | 6.70e-07 | 66 |
endocrine gland | 9.03e-07 | 60 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.