FFCP PHASE1:Hg19::chr9:97416545..97416564,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C475|description=CAGE_peak_at_chr9:97416545..97416564,-|id=chr9:97416545..97416564,-|ontology_enrichment_celltype=CL:0002057!1.83e-112!42;CL:0000860!2.16e-104!45;CL:0002194!8.55e-98!63;CL:0000576!8.55e-98!63;CL:0000040!8.55e-98!63;CL:0000559!8.55e-98!63;CL:0002009!1.52e-94!65;CL:0000766!3.97e-93!76;CL:0000839!3.18e-87!70;CL:0000557!6.99e-86!71;CL:0000763!2.36e-60!112;CL:0000049!2.36e-60!112;CL:0002087!1.36e-58!119;CL:0000738!2.12e-56!140;CL:0002031!6.97e-48!124;CL:0000037!4.22e-44!172;CL:0000566!4.22e-44!172;CL:0000988!3.88e-41!182;CL:0002032!6.39e-40!165;CL:0000837!6.39e-40!165;CL:0002393!8.84e-35!9;CL:0002397!8.84e-35!9;CL:0000134!5.31e-18!358;CL:0002320!1.86e-17!365;CL:0000219!1.55e-15!390;CL:0000048!3.11e-13!430;CL:0000767!3.59e-13!3;CL:0000723!6.60e-13!436;CL:0000034!1.75e-12!444;CL:0000842!4.57e-12!3;CL:0000875!7.50e-12!3;CL:0002396!7.50e-12!3;CL:0000224!3.67e-09!4;CL:0000063!4.18e-07!578|ontology_enrichment_celltype_v019=CL:0002393;4.01e-57;6!CL:0002397;4.01e-57;6!CL:0000576;2.38e-29;48!CL:0000767;4.27e-29;3!CL:0000766;9.26e-26;69!CL:0000860;1.62e-20;33!CL:0002057;1.62e-20;33!CL:0000473;1.05e-19;39!CL:0000234;1.05e-19;39!CL:0000094;2.66e-11;8!CL:0000763;2.31e-09;100!CL:0000081;2.33e-08;11!CL:0000738;2.30e-07;136|ontology_enrichment_celltype_v019_2=CL:0000860,2.48e-55,42;CL:0002057,2.48e-55,42;CL:0000473,2.02e-54,48;CL:0000234,2.02e-54,48;CL:0002393,1.99e-51,9;CL:0002397,1.99e-51,9;CL:0000766,3.25e-49,72;CL:0002194,4.71e-43,59;CL:0000576,4.71e-43,59;CL:0000040,4.71e-43,59;CL:0000559,4.71e-43,59;CL:0002009,1.38e-41,61;CL:0000839,2.68e-38,66;CL:0000557,1.07e-37,67;CL:0000763,4.38e-32,108;CL:0000049,4.38e-32,108;CL:0000767,2.18e-29,3;CL:0000738,9.17e-28,136;CL:0002087,8.53e-24,115;CL:0000037,5.58e-22,168;CL:0000988,1.00e-20,177;CL:0002032,1.10e-20,161;CL:0000837,1.10e-20,161;CL:0002031,4.53e-20,120;CL:0000094,2.08e-11,8;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000081,1.95e-08,11;CL:0000219,7.44e-08,386;CL:0000048,7.57e-07,427|ontology_enrichment_development_v019=CL:0002057;3.31e-42;42!CL:0000049;9.20e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.72e-75!80;UBERON:0001474!1.90e-69!86;UBERON:0002390!1.12e-66!102;UBERON:0003061!1.12e-66!102;UBERON:0002193!6.52e-60!112;UBERON:0004765!7.66e-58!101;UBERON:0001434!7.66e-58!101;UBERON:0002405!1.02e-49!115;UBERON:0002204!2.21e-31!167;UBERON:0003081!5.11e-28!216;UBERON:0002384!1.03e-16!375;UBERON:0000926!5.10e-09!448;UBERON:0004120!5.10e-09!448;UBERON:0006603!5.10e-09!448|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.30e-33,76;UBERON:0001474,1.96e-30,82;UBERON:0002390,2.46e-28,98;UBERON:0003061,2.46e-28,98;UBERON:0004765,1.55e-27,90;UBERON:0002405,1.41e-26,93;UBERON:0002193,1.71e-25,108;UBERON:0001434,1.48e-24,100;UBERON:0002204,1.03e-13,167;UBERON:0003081,2.42e-12,203;UBERON:0002384,2.34e-08,371;UBERON:0000926,6.14e-07,315;UBERON:0004120,6.14e-07,315;UBERON:0006603,6.14e-07,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75354993794233,1.53531759238885,2.94150634300544,0,0,0,0,0,0,3.87796785972314,3.20871115952227,2.60413044859022,0,0,0,0.436194716338694,1.13362783106643,0.242584061187816,2.32429036905685,0.411167888021826,0.309706370895104,0.863077176966451,2.0492856522328,0.945928919554341,0.689491361473237,2.5819387343353,0,0.752969358170419,0.272906150057846,0,0,0.320929027076094,0.639337125799041,0.329851300186716,0.797854630486527,0.852449501065388,0.290209238628584,0.56738522469114,0,1.00499466102697,2.08593167368081,3.04064382587163,0.605399502633369,0,0,3.38008458099107,1.06302149982522,1.88692780957538,2.80821577866238,1.35159203557356,0.16072558669708,1.99508920618874,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,1.50999940573032,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C475 | |||
|description=CAGE_peak_at_chr9:97416545..97416564,- | |||
|id=chr9:97416545..97416564,- | |||
|ontology_enrichment_celltype=CL:0002057!1.83e-112!42;CL:0000860!2.16e-104!45;CL:0002194!8.55e-98!63;CL:0000576!8.55e-98!63;CL:0000040!8.55e-98!63;CL:0000559!8.55e-98!63;CL:0002009!1.52e-94!65;CL:0000766!3.97e-93!76;CL:0000839!3.18e-87!70;CL:0000557!6.99e-86!71;CL:0000763!2.36e-60!112;CL:0000049!2.36e-60!112;CL:0002087!1.36e-58!119;CL:0000738!2.12e-56!140;CL:0002031!6.97e-48!124;CL:0000037!4.22e-44!172;CL:0000566!4.22e-44!172;CL:0000988!3.88e-41!182;CL:0002032!6.39e-40!165;CL:0000837!6.39e-40!165;CL:0002393!8.84e-35!9;CL:0002397!8.84e-35!9;CL:0000134!5.31e-18!358;CL:0002320!1.86e-17!365;CL:0000219!1.55e-15!390;CL:0000048!3.11e-13!430;CL:0000767!3.59e-13!3;CL:0000723!6.60e-13!436;CL:0000034!1.75e-12!444;CL:0000842!4.57e-12!3;CL:0000875!7.50e-12!3;CL:0002396!7.50e-12!3;CL:0000224!3.67e-09!4;CL:0000063!4.18e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002393;4.01e-57;6!CL:0002397;4.01e-57;6!CL:0000576;2.38e-29;48!CL:0000767;4.27e-29;3!CL:0000766;9.26e-26;69!CL:0000860;1.62e-20;33!CL:0002057;1.62e-20;33!CL:0000473;1.05e-19;39!CL:0000234;1.05e-19;39!CL:0000094;2.66e-11;8!CL:0000763;2.31e-09;100!CL:0000081;2.33e-08;11!CL:0000738;2.30e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.48e-55,42;CL:0002057,2.48e-55,42;CL:0000473,2.02e-54,48;CL:0000234,2.02e-54,48;CL:0002393,1.99e-51,9;CL:0002397,1.99e-51,9;CL:0000766,3.25e-49,72;CL:0002194,4.71e-43,59;CL:0000576,4.71e-43,59;CL:0000040,4.71e-43,59;CL:0000559,4.71e-43,59;CL:0002009,1.38e-41,61;CL:0000839,2.68e-38,66;CL:0000557,1.07e-37,67;CL:0000763,4.38e-32,108;CL:0000049,4.38e-32,108;CL:0000767,2.18e-29,3;CL:0000738,9.17e-28,136;CL:0002087,8.53e-24,115;CL:0000037,5.58e-22,168;CL:0000988,1.00e-20,177;CL:0002032,1.10e-20,161;CL:0000837,1.10e-20,161;CL:0002031,4.53e-20,120;CL:0000094,2.08e-11,8;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000081,1.95e-08,11;CL:0000219,7.44e-08,386;CL:0000048,7.57e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;3.31e-42;42!CL:0000049;9.20e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.72e-75!80;UBERON:0001474!1.90e-69!86;UBERON:0002390!1.12e-66!102;UBERON:0003061!1.12e-66!102;UBERON:0002193!6.52e-60!112;UBERON:0004765!7.66e-58!101;UBERON:0001434!7.66e-58!101;UBERON:0002405!1.02e-49!115;UBERON:0002204!2.21e-31!167;UBERON:0003081!5.11e-28!216;UBERON:0002384!1.03e-16!375;UBERON:0000926!5.10e-09!448;UBERON:0004120!5.10e-09!448;UBERON:0006603!5.10e-09!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.30e-33,76;UBERON:0001474,1.96e-30,82;UBERON:0002390,2.46e-28,98;UBERON:0003061,2.46e-28,98;UBERON:0004765,1.55e-27,90;UBERON:0002405,1.41e-26,93;UBERON:0002193,1.71e-25,108;UBERON:0001434,1.48e-24,100;UBERON:0002204,1.03e-13,167;UBERON:0003081,2.42e-12,203;UBERON:0002384,2.34e-08,371;UBERON:0000926,6.14e-07,315;UBERON:0004120,6.14e-07,315;UBERON:0006603,6.14e-07,315 | |||
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|short_description=p@chr9:97416545..97416564,- | |||
}} |
Revision as of 09:53, 14 September 2013
Short description: | p@chr9:97416545..97416564, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:97416545..97416564, - |
Coexpression cluster: | C475_CD14_Basophils_CD14CD16_Peripheral_CD133_large_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.48e-55 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.48e-55 | 42 |
defensive cell | 2.02e-54 | 48 |
phagocyte | 2.02e-54 | 48 |
intermediate monocyte | 1.99e-51 | 9 |
CD14-positive, CD16-positive monocyte | 1.99e-51 | 9 |
myeloid leukocyte | 3.25e-49 | 72 |
monopoietic cell | 4.71e-43 | 59 |
monocyte | 4.71e-43 | 59 |
monoblast | 4.71e-43 | 59 |
promonocyte | 4.71e-43 | 59 |
macrophage dendritic cell progenitor | 1.38e-41 | 61 |
myeloid lineage restricted progenitor cell | 2.68e-38 | 66 |
granulocyte monocyte progenitor cell | 1.07e-37 | 67 |
myeloid cell | 4.38e-32 | 108 |
common myeloid progenitor | 4.38e-32 | 108 |
basophil | 2.18e-29 | 3 |
leukocyte | 9.17e-28 | 136 |
nongranular leukocyte | 8.53e-24 | 115 |
hematopoietic stem cell | 5.58e-22 | 168 |
hematopoietic cell | 1.00e-20 | 177 |
hematopoietic oligopotent progenitor cell | 1.10e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.10e-20 | 161 |
hematopoietic lineage restricted progenitor cell | 4.53e-20 | 120 |
granulocyte | 2.08e-11 | 8 |
mesenchymal cell | 6.59e-09 | 354 |
connective tissue cell | 1.13e-08 | 361 |
blood cell | 1.95e-08 | 11 |
motile cell | 7.44e-08 | 386 |
multi fate stem cell | 7.57e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.30e-33 | 76 |
bone element | 1.96e-30 | 82 |
hematopoietic system | 2.46e-28 | 98 |
blood island | 2.46e-28 | 98 |
skeletal element | 1.55e-27 | 90 |
immune system | 1.41e-26 | 93 |
hemolymphoid system | 1.71e-25 | 108 |
skeletal system | 1.48e-24 | 100 |
musculoskeletal system | 1.03e-13 | 167 |
lateral plate mesoderm | 2.42e-12 | 203 |
connective tissue | 2.34e-08 | 371 |
mesoderm | 6.14e-07 | 315 |
mesoderm-derived structure | 6.14e-07 | 315 |
presumptive mesoderm | 6.14e-07 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.