FFCP PHASE1:Hg19::chr1:19408093..19408179,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23352 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30313 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc001bbf.2_5end | |||
|description=CAGE_peak_4_at_UBR4_5end | |||
|id=chr1:19408093..19408179,- | |||
|ontology_enrichment_celltype=CL:0000766!8.78e-32!76;CL:0000763!2.06e-28!112;CL:0000049!2.06e-28!112;CL:0000839!3.50e-28!70;CL:0000557!7.29e-27!71;CL:0002194!3.01e-26!63;CL:0000576!3.01e-26!63;CL:0000040!3.01e-26!63;CL:0000559!3.01e-26!63;CL:0002009!1.44e-25!65;CL:0002057!1.22e-21!42;CL:0000860!1.30e-18!45;CL:0000134!1.71e-14!358;CL:0000063!2.95e-13!578;CL:0002320!9.08e-13!365;CL:0000219!2.57e-11!390;CL:0000037!1.33e-10!172;CL:0000566!1.33e-10!172;CL:0002032!3.34e-10!165;CL:0000837!3.34e-10!165;CL:0002371!1.02e-09!591;CL:0000738!1.89e-09!140;CL:0000988!2.43e-09!182;CL:0000723!2.44e-09!436;CL:0000048!3.15e-09!430;CL:0000034!2.07e-08!444;CL:0002031!2.37e-07!124;CL:0000144!4.63e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.56e-22;33!CL:0002057;2.56e-22;33!CL:0000473;3.12e-22;39!CL:0000234;3.12e-22;39!CL:0000576;7.64e-18;48!CL:0000766;1.25e-15;69!CL:0000763;2.05e-10;100!CL:1000497;1.58e-07;17!CL:0002518;1.58e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.72e-38,72;CL:0000839,6.53e-33,66;CL:0000557,6.14e-32,67;CL:0002194,2.16e-31,59;CL:0000576,2.16e-31,59;CL:0000040,2.16e-31,59;CL:0000559,2.16e-31,59;CL:0000763,6.87e-31,108;CL:0000049,6.87e-31,108;CL:0002009,3.16e-30,61;CL:0000473,1.25e-27,48;CL:0000234,1.25e-27,48;CL:0000860,1.94e-23,42;CL:0002057,1.94e-23,42;CL:0000134,2.49e-15,354;CL:0002320,6.96e-14,361;CL:0000219,7.97e-13,386;CL:0000037,1.21e-12,168;CL:0000738,1.82e-12,136;CL:0002032,2.23e-12,161;CL:0000837,2.23e-12,161;CL:0000988,2.90e-11,177;CL:0002031,1.04e-09,120;CL:0002087,3.50e-09,115;CL:0000048,3.64e-09,427;CL:0000723,3.85e-09,433;CL:0000034,2.89e-08,441;CL:1000497,1.06e-07,17;CL:0002518,1.06e-07,17 | |||
|ontology_enrichment_development_v019=CL:0002057;2.16e-17;42!CL:0000049;1.77e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!2.05e-26!216;UBERON:0002193!5.43e-22!112;UBERON:0002390!1.38e-21!102;UBERON:0003061!1.38e-21!102;UBERON:0002371!1.53e-21!80;UBERON:0001474!3.04e-17!86;UBERON:0002405!6.32e-17!115;UBERON:0004765!4.63e-13!101;UBERON:0001434!4.63e-13!101;UBERON:0002384!8.94e-12!375;UBERON:0000926!1.28e-11!448;UBERON:0004120!1.28e-11!448;UBERON:0006603!1.28e-11!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;3.28e-07;30!UBERON:0001008;3.28e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.44e-26,203;UBERON:0002371,6.07e-26,76;UBERON:0002390,6.30e-26,98;UBERON:0003061,6.30e-26,98;UBERON:0002193,8.10e-25,108;UBERON:0002405,5.64e-22,93;UBERON:0001474,7.63e-22,82;UBERON:0000926,2.10e-20,315;UBERON:0004120,2.10e-20,315;UBERON:0006603,2.10e-20,315;UBERON:0004765,2.62e-18,90;UBERON:0001434,6.46e-15,100;UBERON:0002384,1.17e-12,371 | |||
|phase1_expression=7.44881355009282,4.71021152560163,4.79244973926302,10.007329835313,3.12872766099101,3.48935409640147,2.53299878168311,3.15859936713415,2.08948502559871,1.22866968250754,3.48900583986214,11.5773927228991,12.3970479767373,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0,0,0,0,0,0,0,31.8625064247612,18.4238111086662,20.7453605243542,0,0,0.739508020333575,0,0,0.293600439334847,17.7278530730201,18.0490002723128,13.8886957258145,22.1676319497525,15.546895968911,19.8333187078324,41.2930998133964,34.7645868193705,25.7139104859085,45.0912331597028,46.8731392344881,36.2356453947271,32.509240332403,31.5077669030794,19.8645073106412,31.0271112662957,25.1739026597692,25.7310324529249,53.0843397510145,45.5753270596602,29.214052977861,34.8935637302829,36.5859090866747,13.4260796417799,20.1209293113897,27.5259847517852,16.6227652707751,39.4684564534874,35.1778839308507,21.1759564658495,47.7372463987812,33.8963896973131,33.8814597739982,28.4537766237683,36.8277635987565,18.9877432464531,5.91514801673437,5.95292039902122,7.54771123830153,43.2465229914006,37.3940463175351,26.037545044927,0.570025487482497,0.19891667719909,0.547992461293902,3.51992488922645,1.63841583378639,0.889509253863555,1.70692089026603,0.800791974072025,1.14950487990897,0.661044872784862,0.954053754535364,1.70763890732835,4.69789751496751,0.382273228125229,0,0.560508562981536,2.63384084775077,0,0,0,0.501559486172034,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,1.50575119077773,1.02389288923535,0,1.4206635122641,0,0,0.267440195783507,0,0,12.0726154746655,0.255725123687061,0.361439152384566,0,0,0,0.486634870302636,0,0,0.087834785693126,0.785874452986276,0,0,45.4366351116557,58.6817214698531,52.6513523654706,1.43094374583205,2.28797964312051,0.371457501329565,14.1121309230361,5.16140757063675,4.85996702250632,2.82653970962005,15.5214791397665,3.57653454522088,7.52381879532518,8.78616981175718,7.1153252537342,0.66944122552934,0.805658634218294,0,0.24406205754817,5.8826092855339,2.43042584364528,2.14319347881791,2.2452937262617,2.81528701208306,6.13266549863533,1.89853131913626,2.38162267109529,2.63560834872127,3.87780264148325,0.872188104285069,0.496971951695318,1.39293562831038,1.32409180813219,4.01571269048339,2.12801029319014,1.12135520028461,2.1349799145941,2.22000793575444,1.55605517699883,3.3677668017422,3.59616186849609,0.151357427644931,0,0,14.6715236110251,5.13424639390004,6.27684458317565,0.117434498643765,0.647491777472526,0.421352420106746,1.83738754129404,0.368502951935304,1.85986406116378,1.18800285728205,2.22540236350701,2.73048408581408,2.87447256726495,0,0,5.26421819419948,0,0.30648779579902,0.751190294532984,4.99101605904093,1.07633781413317,0.213557388818567,2.33125091275518,11.1033705551229,3.81294358182224,2.31876486041066,2.79175284497385,3.71307930930786,2.33848812386877,1.26216887122057,0.828449087780694,0.161646056818812,0.710019185033229,1.30977727695932,0.508681776931463,3.09217365061275,1.63647672354501,0.573609190778008,0,0,0,0.414644220061482,0,0,0,0.643240938192885,11.0507937081984,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0.134831308160164,0,0,7.38155454624648,11.2193419042757,1.6462960453256,1.47008711385542,1.26755034821831,1.96565443335525,0,0,1.96781501668982,0.171567810298526,0.439001141634502,16.8602629886429,33.1745608958382,0.0925884451585296,0,3.11980435583874,0,0,0.234817388471643,1.73239737313289,0.462985512576611,0.761016608938393,0,0,33.7317298339734,28.0805118167085,19.1734199352459,11.2480600784132,0.16798212819886,0.141775097242386,0.716468181622786,0.290633938513962,0,21.1845192295256,13.9116525740897,13.0616712790686,10.3766366460212,10.4781219743895,2.98440103173194,8.40374536228211,8.20522130470329,3.4214489204541,15.9382613690151,3.30377363628309,0,0.560655421726804,0,0.51336800074665,2.06834745212444,14.3062578340753,19.441963308788,2.12750493267896,3.12022310734098,0,0,0.266422179016099,0,0.542621605391443,0,7.16619605446217,0,0,3.31583314765545,4.35766729300147,1.3996218765488,36.4871341923571,36.1625105831131,27.4084121327941,0,0,0,3.18518874668674,0.205476322550383,0.179060963239896,0,0.788123040807709,0.215627574859517,0.77005821767849,0.254094624222463,0,0,0,0,8.23907726341901,8.97484377612075,12.4324654030811,0,0,0,0,0,0,0,0.300946099727719,0,10.3473071292505,0,0,0.434418072340414,0.195801157462741,0,15.3008339330937,11.4328526433867,7.57765660404455,30.9190122875185,6.65741758041988,5.74541557326393,3.2254015016441,2.76231551918512,3.92924132206303,7.94462725385346,8.18731598506726,4.3430558708774,7.42090332224955,2.7757744884478,1.42049380250502,3.6135948646076,22.3279404548957,4.99704627377825,1.32945394550784,0.200506470303285,0.0920809889358963,0.459257792658427,0.182091168006717,0.131124414959424,11.2799903226853,1.77135275340154,12.5495963068297,18.9980992049239,3.69430701125065,14.7853399292166,24.3233998545417,5.82972973475776,9.25363516141736,2.98041081298238,7.5253466078228,4.07802036872061,5.81753206250107,10.9698629813867,0.877039506583738,1.5686127061494,0.256450125116389,0,0.650756789328606,27.3058680866464,0,0,2.29706215198469,0,0,0,0,0,0,0.107420244868274,0,0.596586391912706,0,1.4875642382488,0.960950336825531,0,0.4046311234222,0,0.31481234683064,0,2.15623506123262,4.7907542728532,0.869932992075073,0.18532421910392,0.286249773483982,0,1.2655176988749,1.90630193923825,0,0.42793898803392,0,1.56989728039846,0.359744915166629,0.274537029736055,1.17812402345686,2.83055474202642,0,7.16139375606268,1.46290121726877,1.70599442741899,2.11300293513511,0.136499911407986,0,2.26016233240486,0,0,0.438450885253763,1.73632660280006,1.9676842561399,1.42037263873893,0.92947049429925,1.97186921772569,0,0,0.7133421029625,1.77380532035299,1.68886108238131,0.329294892959902,0,0,0.48111056362756,2.01090682660736,0,27.8665650299266,36.1624513043833,40.4331541602301,50.551037503181,16.999531615315,5.07447609232169,2.29391162142713,9.1143549947866,5.95579438644473,7.4045209155515,7.78167973431261,8.64050299580984,5.55187623405989,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0.635020748171649,2.921597462471,0.280797178113459,2.28234679033192,24.9121034279107,2.50634477090067,0,0.1605880751037,0.605399121573143,9.7944634668775,28.5109436147285,15.9765197440398,20.3545258182098,19.5213495802933,52.1686214723448,0.556812347790485,0,4.59774653409171,0,2.81974010175699,14.2226810710247,10.1090643697607,0,0,0,48.2263859170134,2.67268212749375,71.2612828870218,0,2.11004124615769,0,0,0,1.19548792950642,0.828851746593443,0,3.06806047506464,0,9.33118762985422,8.80709841243803,30.7916420442048,5.62729607249559,5.52403071566828,14.3689855408164,1.11136990144637,0,0,0,0,0,3.62499787717397,1.4793148277115,0,0,0,0,0,1.77148277162768,5.42683973814336,0,0.221158519862449,0,0.658156191461918,0,0.41827123283581,7.46417507486832,0.113942055847001,0.23056390438806,0,0,14.6740533476683,1.64875668123352,0.533034776018635,0,0.784901281975124,10.9699710054103,1.35357396370308,2.15668787749514,2.3495022176618,2.65655225813859,14.7811018451752,0,0,0.424059214301822,0,0,1.14994833854341,0.611030144933625,0,0,0,0,0,0.468528891450678,0,1.17398771359254,0.242780379534093,1.18375320854817,0,0,2.71702292402498,0,0,0,0.661983911750998,1.2557316736289,0,3.41531455235751,0.416024019039416,0,0.0979923974143777,0.0870592065804026,0.873633341210151,0.171986032471617,0,0,0.0821154570532092,6.88622017067778,0,0.677942222341597,0.685209623233754,0.397429223405979,0.253243183823515,0,16.9135110730736,3.20179492109029,1.39866726707491,0.576361668616424,0,0.171594997861965,4.03353434366819,12.7980111632396,0,8.29015657049046,7.74061062711266,0,1.44475294950759,0.600420288709789,0.136905378891993,0,0,0,17.0362264776075,1.14580212005842,16.5110795652667,0.998395002494955,1.28767814440971,2.90122894674434,2.68733889946905,1.44119953416961,0,0,0,0,4.52766414967844,0,0.795229689809303,0.136203406111576,0,0,0,0.2249738915515,1.5476039091159,0.182248669974074,0.670869375198532,3.15222829196793,1.10154635083496,0.105600336519406,63.8262928024927,0,0.714695326373367,7.28301167401975,0,0,1.72844298240254,0,0,15.7617639838731,0.170388021785422,0.113312091520126,2.19828350517124,3.97520666736664,0.129282956361551,0.13223260174269,71.8564719114184,0,6.51403216662938,5.65935498358797,1.65695622138878,0.496166021811951,0,0,39.5771579817513,0,0.2506898940227,0.919036730290385,0.983617892129413,0,0,0.122026264901963,0.250381861413,0,0.332787154610557,0.18628920882415,0,0,17.7429467523728,0,67.2860244336771,0,0.144921028610825,2.08956724041624,5.84283274618061,7.21247619953397,0,0,2.66943366478961,8.00940239389232,7.71277711192519,1.24349760466224,7.24490234949206,7.16835452236661,1.79921244865442,1.39736661188633,9.95294898818053,9.57030172408781,10.9566462980464,1.80309130796662,2.28483127301277,2.84809513243263,3.63697318405119,2.25562169789226,5.10437135866343,7.16572599657509,0.800055529326307,3.77735275701072,6.73498977531838,11.3566408405786,26.1962969353933,1.71553273099941,0,0.226705925512272,0,0.734210113519403,0,0,0,46.2925562378208,0.964570191354574,1.18259708457151,0,79.4489785981757,3.03859956177382,0.414775308455192,2.14346339723327,1.32864840313363,0.327130788511688,0.327609848846413,0,34.021251860739,0,2.02714286418868,0,1.70254786070051,18.9629128759396,2.37795163123056,1.24415452006595,0,0,0,0,0,0,0.495743057036009,0,0.954013051960256,0,0,0,0.3062454773532,1.22035527683273,0,0,0,0.252071696221718,0,0.161475645631851,0,0,2.71330363699803,0.366857197043358,0.231051332300676,0.762764190934334,0,0,0.902523940191087,0.60511520611056,0,0,4.58561369028271,18.9255790357818,0.337687923091973,0,0,0.126831620387814,0.546974809018219,0,0.992422356778588,0.351742488719241,0,0,0.336283722218824,0,0.455324382702595,1.1531308121143,0,2.22934412268644,0.0679697329768317,0.131545547125698,0.236387681767936,1.89093383216518,4.39561319962878,1.88538707899202,2.5224494698241,0.913158720509496,15.1149313853035,25.7985911459007,0.285906176706625,0,0,0,0,0.828864656652147,0,0.691259661814092,0,0.354996002191696,0.255640214277473,0.846774100381858,0.4582137370881,2.48165108531456,1.91107787795487,0.111855431797792,16.1947885465151,21.0918010219326,0,1.95059333026869,0,2.91426595835484,0,0,0,0,0,0,9.56959560538514,0.437119121007915,0,2.45148321753905,0,0.392616934229891,0.297046400327086,0,4.75795921125887,6.86082601252931,6.83253612519918,0.0999411559249289,1.78553938605658,0,0,0,0.458729283404541,0,0,0.135982980381829,0,0,0,0.924351257262837,1.73050624849516,0,0,0,1.32585478664576,0,3.30821638325442,0,1.43979526614655,0.535928260312357,0,0.310298987585686,3.41174371041569,0,0.193766729508018,0.993195428733726,1.34558235096736,1.90941474834495,0.202117188958219,3.9189014621453,2.39563310759697,2.08791364345221,4.08816570738255,0,2.11648498388534,0,0,5.56916253060839,0,1.22241444182866,8.95171592294625,11.3178651611537,1.40891655513718,0 | |||
|short_description=p4@UBR4 | |||
}} |
Revision as of 16:42, 10 January 2014
Short description: | p4@UBR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_UBR4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001bbf.2_5end |
EntrezGene: | UBR4 |
HGNC: | 30313 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.72e-38 | 72 |
myeloid lineage restricted progenitor cell | 6.53e-33 | 66 |
granulocyte monocyte progenitor cell | 6.14e-32 | 67 |
monopoietic cell | 2.16e-31 | 59 |
monocyte | 2.16e-31 | 59 |
monoblast | 2.16e-31 | 59 |
promonocyte | 2.16e-31 | 59 |
myeloid cell | 6.87e-31 | 108 |
common myeloid progenitor | 6.87e-31 | 108 |
macrophage dendritic cell progenitor | 3.16e-30 | 61 |
defensive cell | 1.25e-27 | 48 |
phagocyte | 1.25e-27 | 48 |
classical monocyte | 1.94e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.94e-23 | 42 |
mesenchymal cell | 2.49e-15 | 354 |
connective tissue cell | 6.96e-14 | 361 |
motile cell | 7.97e-13 | 386 |
hematopoietic stem cell | 1.21e-12 | 168 |
leukocyte | 1.82e-12 | 136 |
hematopoietic oligopotent progenitor cell | 2.23e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.23e-12 | 161 |
hematopoietic cell | 2.90e-11 | 177 |
hematopoietic lineage restricted progenitor cell | 1.04e-09 | 120 |
nongranular leukocyte | 3.50e-09 | 115 |
multi fate stem cell | 3.64e-09 | 427 |
somatic stem cell | 3.85e-09 | 433 |
stem cell | 2.89e-08 | 441 |
kidney cell | 1.06e-07 | 17 |
kidney epithelial cell | 1.06e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.44e-26 | 203 |
bone marrow | 6.07e-26 | 76 |
hematopoietic system | 6.30e-26 | 98 |
blood island | 6.30e-26 | 98 |
hemolymphoid system | 8.10e-25 | 108 |
immune system | 5.64e-22 | 93 |
bone element | 7.63e-22 | 82 |
mesoderm | 2.10e-20 | 315 |
mesoderm-derived structure | 2.10e-20 | 315 |
presumptive mesoderm | 2.10e-20 | 315 |
skeletal element | 2.62e-18 | 90 |
skeletal system | 6.46e-15 | 100 |
connective tissue | 1.17e-12 | 371 |