FFCP PHASE1:Hg19::chr1:156030937..156030983,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57111 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18238 | |||
|TSSclassifier=strong | |||
|UniProt=P57735 | |||
|association_with_transcript=0bp_to_ENST00000361084,ENST00000463614,NM_020387,uc001fnc.2_5end | |||
|coexpression_cluster_id=C543 | |||
|description=CAGE_peak_1_at_RAB25_5end | |||
|id=chr1:156030937..156030983,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.64e-17!254;CL:0002076!6.65e-17!43;CL:0000223!8.76e-14!59;CL:0002251!1.26e-08!21;CL:0002368!1.94e-08!13;CL:0002159!2.32e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.07e-17;42!CL:0002251;1.39e-11;20!CL:0002368;3.65e-10;13!CL:0002159;4.29e-09;14!CL:0002202;6.30e-08;9!CL:0002632;6.30e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.44e-25,253;CL:0002076,2.71e-22,42;CL:0000223,5.37e-16,58;CL:0002251,1.44e-11,20;CL:0002368,3.55e-10,13;CL:0002159,4.26e-09,14;CL:0002202,6.18e-08,9;CL:0002632,6.18e-08,9 | |||
|ontology_enrichment_development_v019=CL:0000223;1.20e-08;58 | |||
|ontology_enrichment_disease=DOID:305!1.79e-11!106;DOID:1749!1.27e-08!14;DOID:0050687!5.65e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.10e-10;14!DOID:299;6.13e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.36e-14,106;DOID:1749,2.13e-10,14;DOID:0050687,1.86e-09,143;DOID:299,6.14e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.76e-19!169;UBERON:0000925!3.76e-19!169;UBERON:0006595!3.76e-19!169;UBERON:0001007!3.16e-14!155;UBERON:0001555!3.16e-14!155;UBERON:0007026!3.16e-14!155;UBERON:0004921!1.18e-12!129;UBERON:0004185!1.18e-12!129;UBERON:0000077!6.97e-12!130;UBERON:0000466!1.22e-11!126;UBERON:0000464!1.57e-11!104;UBERON:0005911!8.90e-10!82;UBERON:0001004!4.79e-09!72;UBERON:0005631!2.08e-08!14;UBERON:0000158!2.08e-08!14;UBERON:0000161!3.71e-08!35;UBERON:0001041!1.10e-07!98;UBERON:0005177!2.07e-07!107;UBERON:0005153!2.64e-07!37;UBERON:0000166!7.11e-07!21;UBERON:0005156!8.98e-07!59;UBERON:0000990!8.98e-07!59;UBERON:0005178!9.11e-07!34;UBERON:0002224!9.11e-07!34;UBERON:0001008!9.99e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.37e-11;33!UBERON:0005178;3.63e-08;34!UBERON:0002224;3.63e-08;34!UBERON:0001555;7.51e-08;54!UBERON:0005181;2.52e-07;35!UBERON:0005409;2.54e-07;22!UBERON:0005911;2.68e-07;36!UBERON:0000161;3.70e-07;19!UBERON:0000166;3.70e-07;19!UBERON:0005631;4.25e-07;10!UBERON:0000158;4.25e-07;10!UBERON:0001041;4.75e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.44e-24,160;UBERON:0000925,2.44e-24,160;UBERON:0006595,2.44e-24,160;UBERON:0001007,3.22e-18,145;UBERON:0001555,3.22e-18,145;UBERON:0007026,3.22e-18,145;UBERON:0004921,2.92e-16,118;UBERON:0001004,2.58e-12,74;UBERON:0005911,5.38e-11,82;UBERON:0001008,7.63e-11,48;UBERON:0006554,2.15e-10,47;UBERON:0005631,2.77e-10,14;UBERON:0000158,2.77e-10,14;UBERON:0001041,9.93e-10,87;UBERON:0000161,1.95e-09,36;UBERON:0005178,4.08e-09,34;UBERON:0002224,4.08e-09,34;UBERON:0005153,4.19e-09,37;UBERON:0005177,9.93e-09,101;UBERON:0005181,1.15e-08,35;UBERON:0000065,2.46e-08,54;UBERON:0000166,4.76e-08,22;UBERON:0005157,1.35e-07,47;UBERON:0000915,1.77e-07,52;UBERON:0003124,2.32e-07,7;UBERON:0005156,3.83e-07,59;UBERON:0000990,3.83e-07,59;UBERON:0009569,5.22e-07,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,162.430132027497,501.021238604203,121.453402904376,148.764575720848,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.157421562627358,0.393364276848904,0,5.41856431606266,105.733440815077,86.1448927705795,129.783657568542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.05399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,1.28019066769952,1.60158394814405,0,0,0,0,0,0.382273228125229,0,0,0,0.786839080455332,1.96505381374582,1.02800749499755,1.33749196312542,1.62961133316795,0.473447805734733,0,0.222820913770347,0.589211814949674,0.221533894583621,0.812411591295047,0.25618263945135,0.520237390239513,0,0,0.289803085735052,3.55887751588945,1.33770414044857,4.18142095219907,0.339928028092699,0,1.03088233644789,2.02415753615602,0.637130828648193,0,0,0.903450714466637,0.895906278080929,1.24930726552346,1.4206635122641,1.64225599384209,0.201606743224732,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0.973269740605272,0.0945348171640679,0,0.087834785693126,14.2112296915018,267.757036895019,259.178325506316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,192.317476994858,0,0,0,0,0.709336764396714,1.12135520028461,0,0,0,0,0,0,0,0,0,1.1409436430889,0.149448680551801,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44.256735374395,45.0031098974877,42.1602755221836,41.1051389656736,34.9878588368721,56.0054804631079,41.8790662262097,59.043079104897,26.2783698534598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,0,0,0,0.590789906681404,0,131.720617679675,0,118.20105738509,116.897823387924,76.5025480052511,130.271942338051,0,0,0,0,0,0,0,0,243.382954571457,257.545848628462,0,0,0,44.9922403136529,22.0056587940506,56.9935890914394,11.5530494286674,38.9449477608709,84.7275720955117,0,0,0.621984346622316,0.864719720501769,0.88369703398466,0.317489471460845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10419213877515,0,0.553107505625109,0,0,0,0.413536052245775,0.215714200818617,0.533637789017222,65.1724278609458,163.106730720287,105.534212372058,0,0,0,0,0,0,0,0,0,0,0,0,139.109226479957,85.0147434085928,105.524813320537,0,0,0.262248829918848,101.06871329126,83.8697021067077,20.3930939985982,24.8436681910543,25.2268393053973,0,0,0,0,0,2.50844886927427,85.3835514700878,147.931529589313,15.2234833211081,0,0,0,0,0,24.5237607721579,0,0,83.8427685474412,152.114097572546,0,0,0,0,0,0,0,0.170453254832202,0,57.6844354609814,26.7144193637498,16.5896526242959,49.3649970575084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,85.7339024384312,174.278591639305,92.5573371321242,23.441806393418,151.968396552944,213.958774097884,266.944952429079,120.14533830824,0,0,0.569647187174163,0.714695326373367,0,0,0,0.79312517629427,0,0,84.0487940814939,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,129.875535043305,0,0,0,0,318.485142640078,131.258388928026,454.597839106863,0,0,0,0,0,8.567663494796,25.4181202288656,130.249230640661,0,0,0,109.908993453181,185.644958138607,0,25.7459288712397,0,0,0,0,0,116.671636966184,142.559799993799,8.69999490521752,117.093458285779,155.34898032888,184.146004097222,0.344743373241465,0,0,0,0,0,0,0,0,0,133.289099530345,52.0183747485668,0,54.6436453399702,118.569848265309,174.813621422511,148.973541594806,51.1114571182392,93.2810858032611,0,0,0,0,0.19606253431774,0.167821586975843,0,0,0,66.7622185370914,108.7005119327,0,98.530931176772,62.6279556683641,75.7677379717695,0,0,0,0.134802265961354,0,0.234264445725339,0,173.163187754899,0,63.5280888587519,42.3467506170324,0,0,0.150323419414493,0,0,0,0,0,32.7300977934262,0,63.8699837073282,104.165918451483,26.9012948333444,37.3915070037945,0,0,0,0,207.168539219264,0,21.0162088925895,0,0,0.0633107959558787,261.452198716432,53.3056154672699,79.6179670377785,0,204.752482775985,0,0,0,0,145.65891339318,0,0,0,0,0,0,0,0,0,0,0,0,90.055229225045,0,0,0.201550417460179,0,17.4743924291181,0.0787831823072236,0.164831716762333,0.0674035438541849,0,0,0,0,44.8501284217404,57.3539450610465,68.9630961128447,1.799791132412,19.3450488639487,0.121499113316049,17.4426037551618,38.2995737474103,56.021500128178,0,0,11.7068270364862,0,0,0,0,0,0,0,0,0,0,1.61207457045891,3.97520666736664,0.129282956361551,0.13223260174269,0,97.9692881020174,47.200036354921,52.0346249879894,54.6795553058298,0.992332043623902,0,2.19226677085613,70.21753835472,0,0,0,0,105.540352680157,0,0,0,0,0,0.248385611765534,0,0,0,0,0,36.5301226529368,62.0262002454332,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,74.804491668954,0,0,0,0,0,121.415412700478,63.4518805233632,0,0,0,0,0.678930119816101,0,0,1.11728983594649,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,72.4330162537569,59.9286194606521,82.7262979332772,144.2915570217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| |||
|short_description=p1@RAB25 | |||
}} |
Revision as of 21:21, 10 January 2014
Short description: | p1@RAB25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAB25_5end |
Coexpression cluster: | C543_Alveolar_Corneal_Urothelial_amniotic_Esophageal_Tracheal_esophagus |
Association with transcript: | 0bp_to_ENST00000361084, ENST00000463614, NM_020387, uc001fnc.2_5end |
EntrezGene: | RAB25 |
HGNC: | 18238 |
UniProt: | P57735 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.44e-25 | 253 |
endo-epithelial cell | 2.71e-22 | 42 |
endodermal cell | 5.37e-16 | 58 |
epithelial cell of alimentary canal | 1.44e-11 | 20 |
respiratory epithelial cell | 3.55e-10 | 13 |
general ecto-epithelial cell | 4.26e-09 | 14 |
epithelial cell of tracheobronchial tree | 6.18e-08 | 9 |
epithelial cell of lower respiratory tract | 6.18e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.44e-24 | 160 |
endoderm | 2.44e-24 | 160 |
presumptive endoderm | 2.44e-24 | 160 |
digestive system | 3.22e-18 | 145 |
digestive tract | 3.22e-18 | 145 |
primitive gut | 3.22e-18 | 145 |
subdivision of digestive tract | 2.92e-16 | 118 |
respiratory system | 2.58e-12 | 74 |
endo-epithelium | 5.38e-11 | 82 |
renal system | 7.63e-11 | 48 |
urinary system structure | 2.15e-10 | 47 |
extraembryonic membrane | 2.77e-10 | 14 |
membranous layer | 2.77e-10 | 14 |
foregut | 9.93e-10 | 87 |
orifice | 1.95e-09 | 36 |
thoracic cavity element | 4.08e-09 | 34 |
thoracic cavity | 4.08e-09 | 34 |
epithelial bud | 4.19e-09 | 37 |
trunk region element | 9.93e-09 | 101 |
thoracic segment organ | 1.15e-08 | 35 |
respiratory tract | 2.46e-08 | 54 |
oral opening | 4.76e-08 | 22 |
epithelial fold | 1.35e-07 | 47 |
thoracic segment of trunk | 1.77e-07 | 52 |
chorion | 2.32e-07 | 7 |
reproductive structure | 3.83e-07 | 59 |
reproductive system | 3.83e-07 | 59 |
subdivision of trunk | 5.22e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.36e-14 | 106 |
squamous cell carcinoma | 2.13e-10 | 14 |
cell type cancer | 1.86e-09 | 143 |
adenocarcinoma | 6.14e-08 | 25 |