FFCP PHASE1:Hg19::chr11:555661..555679,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C100 | |||
|description=CAGE_peak_at_chr11:555661..555679,+ | |||
|id=chr11:555661..555679,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.72e-10!5;CL:0000650!8.09e-09!3;CL:1000618!8.09e-09!3;CL:1001318!8.09e-09!3;CL:0002173!8.09e-09!3;CL:1000500!8.09e-09!3;CL:1000507!5.44e-08!12;CL:1000494!5.44e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000650;5.96e-34;2!CL:1000500;5.96e-34;2!CL:1000618;5.96e-34;2!CL:1001318;5.96e-34;2!CL:0002173;5.96e-34;2!CL:0000784;3.66e-23;3!CL:0000669;9.45e-18;4!CL:1000746;9.43e-11;7!CL:1000612;9.43e-11;7!CL:1000507;6.34e-08;10!CL:1000494;6.34e-08;10!CL:0000451;2.55e-07;10!CL:0002681;8.14e-07;12!CL:0002584;8.14e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000650,7.05e-34,2;CL:1000500,7.05e-34,2;CL:1000618,7.05e-34,2;CL:1001318,7.05e-34,2;CL:0002173,7.05e-34,2;CL:0000784,3.27e-23,3;CL:0000669,1.03e-17,4;CL:1000746,9.89e-11,7;CL:1000612,9.89e-11,7;CL:1000507,6.56e-08,10;CL:1000494,6.56e-08,10;CL:0000451,2.47e-07,10;CL:0002681,8.38e-07,12;CL:0002584,8.38e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002680!4.72e-10!9;UBERON:0001895!4.72e-10!9;UBERON:0010092!4.72e-10!9;UBERON:0003567!8.09e-09!3;UBERON:0003838!8.09e-09!3;UBERON:0005169!8.09e-09!3;UBERON:0002321!8.09e-09!3;UBERON:0005215!8.09e-09!3;UBERON:0002303!8.09e-09!3;UBERON:0002319!8.09e-09!3;UBERON:0000988!3.02e-08!3;UBERON:0009773!5.44e-08!12;UBERON:0001231!5.44e-08!12;UBERON:0004810!5.44e-08!12;UBERON:0004733!1.46e-07!12;UBERON:0002028!1.46e-07!12;UBERON:0007277!1.46e-07!12;UBERON:0004732!5.49e-07!13;UBERON:0001874!7.15e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0003567;5.96e-34;2!UBERON:0003838;5.96e-34;2!UBERON:0003586;5.96e-34;2!UBERON:0005169;5.96e-34;2!UBERON:0002321;5.96e-34;2!UBERON:0005215;5.96e-34;2!UBERON:0002303;5.96e-34;2!UBERON:0002319;5.96e-34;2!UBERON:0003891;9.45e-18;4!UBERON:0000074;9.43e-11;7!UBERON:0001229;9.43e-11;7!UBERON:0004211;6.34e-08;10!UBERON:0009773;6.34e-08;10!UBERON:0001231;6.34e-08;10!UBERON:0004810;6.34e-08;10!UBERON:0001225;8.14e-07;12!UBERON:0008987;8.14e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,7.05e-34,2;UBERON:0003838,7.05e-34,2;UBERON:0003586,7.05e-34,2;UBERON:0005169,7.05e-34,2;UBERON:0002321,7.05e-34,2;UBERON:0005215,7.05e-34,2;UBERON:0002303,7.05e-34,2;UBERON:0002319,7.05e-34,2;UBERON:0003891,1.03e-17,4;UBERON:0010532,9.89e-11,7;UBERON:0000074,9.89e-11,7;UBERON:0001229,9.89e-11,7;UBERON:0001230,9.89e-11,7;UBERON:0003220,9.89e-11,7;UBERON:0005749,9.89e-11,7;UBERON:0004199,9.89e-11,7;UBERON:0004209,9.89e-11,7;UBERON:0004198,9.89e-11,7;UBERON:0005103,1.47e-09,8;UBERON:0000083,1.47e-09,8;UBERON:0009201,1.47e-09,8;UBERON:0006553,1.47e-09,8;UBERON:0003074,1.47e-09,8;UBERON:0003060,1.47e-09,8;UBERON:0000080,1.21e-08,9;UBERON:0002120,1.21e-08,9;UBERON:0004875,1.21e-08,9;UBERON:0005721,1.21e-08,9;UBERON:0005754,1.21e-08,9;UBERON:0007297,1.21e-08,9;UBERON:0004810,6.56e-08,10;UBERON:0004876,2.63e-07,11;UBERON:0001225,8.38e-07,12;UBERON:0008987,8.38e-07,12;UBERON:0003887,8.38e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0.270946437543853,1.00337954770971,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.63337622438398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962776056180637,0.415440338029185,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.0657727735628491,0.236387681767936,0,0,0.157115589916002,0,0,0,0,0,0,5.11462271619751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.596852325484105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0.250707539292375,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr11:555661..555679,+ | |||
}} |
Revision as of 05:49, 11 January 2014
Short description: | p@chr11:555661..555679, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:555661..555679, + |
Coexpression cluster: | C100_rhabdomyosarcoma_gastric_pineal_Wilms_cervical_mesodermal_endometrial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesangial cell | 7.05e-34 | 2 |
kidney interstitial cell | 7.05e-34 | 2 |
juxtaglomerular complex cell | 7.05e-34 | 2 |
renal interstitial pericyte | 7.05e-34 | 2 |
extraglomerular mesangial cell | 7.05e-34 | 2 |
plasmacytoid dendritic cell | 3.27e-23 | 3 |
pericyte cell | 1.03e-17 | 4 |
glomerular cell | 9.89e-11 | 7 |
kidney corpuscule cell | 9.89e-11 | 7 |
kidney tubule cell | 6.56e-08 | 10 |
nephron tubule epithelial cell | 6.56e-08 | 10 |
dendritic cell | 2.47e-07 | 10 |
kidney cortical cell | 8.38e-07 | 12 |
renal cortical epithelial cell | 8.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 7.05e-34 | 2 |
abdominal segment connective tissue | 7.05e-34 | 2 |
trunk connective tissue | 7.05e-34 | 2 |
interstitial tissue | 7.05e-34 | 2 |
extraglomerular mesangium | 7.05e-34 | 2 |
kidney interstitium | 7.05e-34 | 2 |
juxtaglomerular apparatus | 7.05e-34 | 2 |
mesangium | 7.05e-34 | 2 |
stroma | 1.03e-17 | 4 |
primitive nephron | 9.89e-11 | 7 |
renal glomerulus | 9.89e-11 | 7 |
renal corpuscle | 9.89e-11 | 7 |
glomerular capsule | 9.89e-11 | 7 |
metanephric mesenchyme | 9.89e-11 | 7 |
glomerular tuft | 9.89e-11 | 7 |
S-shaped body | 9.89e-11 | 7 |
renal vesicle | 9.89e-11 | 7 |
comma-shaped body | 9.89e-11 | 7 |
mesonephric epithelium | 1.47e-09 | 8 |
mesonephric tubule | 1.47e-09 | 8 |
nephric duct | 1.47e-09 | 8 |
renal duct | 1.47e-09 | 8 |
mesonephric duct | 1.47e-09 | 8 |
pronephric duct | 1.47e-09 | 8 |
mesonephros | 1.21e-08 | 9 |
pronephros | 1.21e-08 | 9 |
nephrogenic cord | 1.21e-08 | 9 |
pronephric mesoderm | 1.21e-08 | 9 |
rostral part of nephrogenic cord | 1.21e-08 | 9 |
presumptive pronephric mesoderm | 1.21e-08 | 9 |
nephron tubule epithelium | 6.56e-08 | 10 |
urogenital ridge | 2.63e-07 | 11 |
cortex of kidney | 8.38e-07 | 12 |
renal parenchyma | 8.38e-07 | 12 |
intraembryonic coelom | 8.38e-07 | 12 |