FFCP PHASE1:Hg19::chr12:65153175..65153229,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2799 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4422 | |||
|TSSclassifier=strong | |||
|UniProt=P15586,B4DTT0,B4DYH8,F6S8M0,F5H260,Q7Z3X3 | |||
|association_with_transcript=0bp_to_ENST00000258145,ENST00000539825,ENST00000542058,ENST00000543646,ENST00000545471,NM_002076,uc001ssg.3,uc010ssq.1,uc010ssr.1_5end | |||
|description=CAGE_peak_1_at_GNS_5end | |||
|id=chr12:65153175..65153229,- | |||
|ontology_enrichment_celltype=CL:0000766!5.15e-19!76;CL:0002194!4.22e-16!63;CL:0000576!4.22e-16!63;CL:0000040!4.22e-16!63;CL:0000559!4.22e-16!63;CL:0000839!7.66e-15!70;CL:0002009!3.11e-14!65;CL:0000557!4.68e-14!71;CL:0002057!4.86e-13!42;CL:0000860!1.58e-11!45;CL:0000213!2.63e-10!57;CL:0000215!2.63e-10!57;CL:0000222!2.97e-10!119;CL:0002078!1.35e-09!44;CL:0000144!2.61e-09!625;CL:0002371!6.59e-09!591;CL:0000115!2.03e-08!35;CL:0000048!1.69e-07!430;CL:0000548!2.91e-07!679;CL:0000004!2.91e-07!679;CL:0000255!2.91e-07!679;CL:0002139!4.06e-07!24;CL:0000723!8.54e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.01e-12;39!CL:0000234;1.01e-12;39!CL:0000860;4.14e-11;33!CL:0002057;4.14e-11;33!CL:0000766;7.77e-09;69!CL:0000576;8.77e-09;48!CL:0000115;6.81e-08;36!CL:0002078;1.19e-07;45!CL:0002139;4.19e-07;24!CL:0000136;4.73e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.92e-20,72;CL:0002194,4.55e-17,59;CL:0000576,4.55e-17,59;CL:0000040,4.55e-17,59;CL:0000559,4.55e-17,59;CL:0000473,1.13e-16,48;CL:0000234,1.13e-16,48;CL:0000839,1.24e-15,66;CL:0002009,4.70e-15,61;CL:0000557,8.59e-15,67;CL:0000860,4.86e-13,42;CL:0002057,4.86e-13,42;CL:0000222,7.53e-11,121;CL:0000213,1.06e-10,58;CL:0000215,1.06e-10,58;CL:0002078,5.23e-10,45;CL:0000115,7.81e-09,36;CL:0000048,9.67e-08,427;CL:0002139,4.06e-07,24;CL:0000057,5.01e-07,76;CL:0000723,5.07e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;6.90e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!8.31e-19!448;UBERON:0004120!8.31e-19!448;UBERON:0006603!8.31e-19!448;UBERON:0003081!7.21e-15!216;UBERON:0000468!1.86e-14!659;UBERON:0002405!9.91e-14!115;UBERON:0002371!2.76e-13!80;UBERON:0002204!6.36e-13!167;UBERON:0001474!6.77e-13!86;UBERON:0000467!1.49e-12!625;UBERON:0000480!2.91e-12!626;UBERON:0004765!3.20e-12!101;UBERON:0001434!3.20e-12!101;UBERON:0002193!6.49e-10!112;UBERON:0000062!3.10e-08!511;UBERON:0002390!7.54e-08!102;UBERON:0003061!7.54e-08!102;UBERON:0002050!8.52e-08!605;UBERON:0005423!8.52e-08!605;UBERON:0000923!9.55e-08!604;UBERON:0005291!9.55e-08!604;UBERON:0006598!9.55e-08!604;UBERON:0002532!9.55e-08!604;UBERON:0001009!1.85e-07!113;UBERON:0000922!6.34e-07!612;UBERON:0004535!9.15e-07!110 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.82e-22,315;UBERON:0004120,2.82e-22,315;UBERON:0006603,2.82e-22,315;UBERON:0003081,4.00e-15,203;UBERON:0002204,3.10e-14,167;UBERON:0002371,6.78e-14,76;UBERON:0002405,7.05e-14,93;UBERON:0001434,1.75e-13,100;UBERON:0004765,1.83e-13,90;UBERON:0001474,1.93e-13,82;UBERON:0002193,3.19e-10,108;UBERON:0002390,4.10e-08,98;UBERON:0003061,4.10e-08,98;UBERON:0001009,3.79e-07,112 | |||
|phase1_expression=203.298106403753,173.421424351696,206.921065212886,157.115078414415,198.450725925716,150.042226145263,78.5229622321763,99.1800201280125,122.234873997524,44.7235764432746,18.1428303672831,94.3666727602344,86.7793358371612,130.202203313969,149.128819077562,92.1085450638932,100.04729165198,91.2887612984216,95.6348285629394,79.2899614014514,62.2202108294972,68.9600387251793,60.395793284653,57.4872585306114,50.4681411171107,15.5119213668341,12.068786649142,15.1124700122264,123.909747207405,85.5939557756784,128.497382352343,17.4690032650996,30.7230037153815,45.4797432505149,18.8245297410133,9.09883087919498,23.7816355861226,120.217003651417,87.0362902020415,88.9744569934992,461.713707882724,378.307801910168,380.954264530962,133.47558319964,124.699061417307,108.435075350954,146.662722287487,123.350366406548,118.30783368193,184.410823478498,167.785262776561,107.362932369418,154.101319289269,132.969844818268,139.489281192172,155.488172462191,113.528958424064,84.0465831824616,151.817610615968,111.362372395404,113.16267126643,179.109256001387,150.794525161954,122.326503402883,167.160521450064,141.278920948094,97.7830930923053,179.642795658571,137.671490462933,104.685023147866,173.749657255777,129.265450231635,111.394760379191,110.697770027457,117.357573580704,100.216832553004,151.531323416622,152.279369341287,130.509176398029,100.894511284402,107.812839041907,106.310537491017,12.3197371122926,16.9302969491261,15.1216573156804,32.4314969150545,13.6134635592244,16.0930683187255,14.542987201267,11.4486450544244,16.507176104174,16.4426413023863,16.4377488093848,10.5737062863221,11.7706798226123,32.9230105968846,13.5729741378545,17.2924735609632,15.8313154229622,25.9139067855551,11.0813570655421,15.1503297835115,17.534405556712,46.6809814348877,11.7842362989935,15.0643048316862,15.9774279621359,28.0519990199229,36.8067953594455,22.6924308353073,35.3728022765886,27.821096230565,16.4598085109887,16.3199905134725,18.8163942848958,25.0413647361621,14.9455992504749,17.5249997196141,14.9281618291507,24.2109714886314,22.7879208849746,19.0090408889675,27.2540965530769,25.8532954531925,19.9889162483753,32.4384835300303,24.6338399076314,24.7976294166421,20.058014683763,17.2341040620531,246.244934977101,124.079659045173,113.925542602586,96.5042536866792,102.272933769721,102.406488905302,116.11174826946,66.6689772314611,75.9114581827465,75.1662657398092,88.0104552645123,102.360147501462,42.98684401852,34.8537376217364,348.239353391475,346.86643670014,268.708038208626,58.1917123305034,50.9075470594314,45.3178151622069,113.493334606389,112.690731958902,104.836431485493,130.586134584446,160.668284068394,94.6406064273832,111.812307097194,249.630589357572,308.449349749378,261.751519181972,143.407236890856,139.890067452206,140.091621032649,111.034250264452,122.331434130146,107.516872854032,96.0985714840007,70.7200097435264,59.7934886116945,121.506004424721,87.7536353426651,113.331158995014,124.089684527464,44.045499266396,142.133978184861,75.8516764870833,134.52772770623,421.649832500756,87.2484220207958,96.9972248246191,72.5893170961994,85.8403068491717,148.758874921088,107.499116311611,96.6059847400541,150.297925651417,151.53426813824,89.0421440968427,91.7750625881142,88.4231323393896,74.7243402759005,52.8455243896942,50.504358642857,45.3656105648263,92.0735312359569,40.6581590301952,101.465917114602,158.004380018513,178.773989868397,90.1059748318646,71.8618141816238,45.2824146536438,52.8000153859689,74.253182949761,78.57699413767,105.431801754863,199.065428051241,67.8324455296926,143.51170855109,136.890286232702,88.5875346846968,165.350193942506,68.7360370020387,116.968805180716,100.875336131722,155.443001994206,65.7699784838091,95.9248342127635,121.321766410551,61.4255015911485,250.281762724213,72.541510723901,64.9417068549168,68.994124579297,60.5496387711653,60.2289650316908,22.6871093401047,20.8071736264732,31.1399766890309,36.6960134754411,25.7367267893141,18.2488679537915,101.69219601438,106.134754801826,40.0591271922194,89.623010110172,117.666355512142,50.8719240171329,50.0696529531962,52.0583824548321,45.3308227930139,51.6374282499003,56.470407348441,55.2808363456674,59.0626610027292,52.3256133447091,171.990220927543,85.547482020102,103.305076844181,94.0855752867468,73.5179201966619,118.922093217993,94.5263850690247,10.153651286537,81.9103000697136,112.548483555833,67.8256763825306,34.8445435098621,31.1639814476056,33.1466633667536,91.5521337922012,54.0766088345381,95.2586857366804,113.611796875575,213.918640897667,170.352408358067,142.136552361019,136.031718847738,75.8596222040904,78.9807269127283,429.894892628596,409.975472523944,335.163270961082,34.6815185751075,43.1714069471069,30.1980957126283,48.4511607822409,38.363679883843,45.2391561414949,84.7380769181023,115.695642293379,103.249401539304,102.757526786293,94.4293402029322,90.9289846263861,107.720736007434,138.316587707855,82.1147740908985,72.5962098485464,134.854032971919,140.626604854244,100.805844826479,125.992459892818,64.3176766649732,226.7425894391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| |||
|short_description=p1@GNS | |||
}} |
Revision as of 14:24, 11 January 2014
Short description: | p1@GNS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GNS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000258145, ENST00000539825, ENST00000542058, ENST00000543646, ENST00000545471, NM_002076, uc001ssg.3, uc010ssq.1, uc010ssr.1_5end |
EntrezGene: | GNS |
HGNC: | 4422 |
UniProt: | P15586B4DTT0B4DYH8F6S8M0F5H260Q7Z3X3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.92e-20 | 72 |
monopoietic cell | 4.55e-17 | 59 |
monocyte | 4.55e-17 | 59 |
monoblast | 4.55e-17 | 59 |
promonocyte | 4.55e-17 | 59 |
defensive cell | 1.13e-16 | 48 |
phagocyte | 1.13e-16 | 48 |
myeloid lineage restricted progenitor cell | 1.24e-15 | 66 |
macrophage dendritic cell progenitor | 4.70e-15 | 61 |
granulocyte monocyte progenitor cell | 8.59e-15 | 67 |
classical monocyte | 4.86e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.86e-13 | 42 |
mesodermal cell | 7.53e-11 | 121 |
lining cell | 1.06e-10 | 58 |
barrier cell | 1.06e-10 | 58 |
meso-epithelial cell | 5.23e-10 | 45 |
endothelial cell | 7.81e-09 | 36 |
multi fate stem cell | 9.67e-08 | 427 |
endothelial cell of vascular tree | 4.06e-07 | 24 |
fibroblast | 5.01e-07 | 76 |
somatic stem cell | 5.07e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 2.82e-22 | 315 |
mesoderm-derived structure | 2.82e-22 | 315 |
presumptive mesoderm | 2.82e-22 | 315 |
lateral plate mesoderm | 4.00e-15 | 203 |
musculoskeletal system | 3.10e-14 | 167 |
bone marrow | 6.78e-14 | 76 |
immune system | 7.05e-14 | 93 |
skeletal system | 1.75e-13 | 100 |
skeletal element | 1.83e-13 | 90 |
bone element | 1.93e-13 | 82 |
hemolymphoid system | 3.19e-10 | 108 |
hematopoietic system | 4.10e-08 | 98 |
blood island | 4.10e-08 | 98 |
circulatory system | 3.79e-07 | 112 |