FFCP PHASE1:Hg19::chr15:45879429..45879438,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26258 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8549 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UL45,B3KY40 | |||
|association_with_transcript=12bp_to_ENST00000220531,NM_012388,uc001zvq.2,uc001zvr.2_5end | |||
|coexpression_cluster_id=C3494 | |||
|description=CAGE_peak_6_at_PLDN_5end | |||
|id=chr15:45879429..45879438,+ | |||
|ontology_enrichment_celltype=CL:0000048!1.36e-22!430;CL:0000037!2.29e-22!172;CL:0000566!2.29e-22!172;CL:0000988!1.25e-21!182;CL:0000034!1.95e-21!444;CL:0000738!3.18e-21!140;CL:0000723!4.50e-21!436;CL:0002032!1.06e-20!165;CL:0000837!1.06e-20!165;CL:0000763!2.24e-18!112;CL:0000049!2.24e-18!112;CL:0000766!4.30e-18!76;CL:0002320!5.23e-18!365;CL:0000134!7.16e-18!358;CL:0002031!3.33e-17!124;CL:0002087!7.78e-17!119;CL:0000557!1.01e-16!71;CL:0002057!3.83e-16!42;CL:0000219!1.86e-15!390;CL:0000839!2.81e-15!70;CL:0002009!1.19e-14!65;CL:0002194!2.32e-14!63;CL:0000576!2.32e-14!63;CL:0000040!2.32e-14!63;CL:0000559!2.32e-14!63;CL:0000860!1.47e-13!45;CL:0002371!3.42e-09!591;CL:0000144!9.43e-08!625 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.11e-19;33!CL:0002057;3.11e-19;33!CL:0000473;8.55e-14;39!CL:0000234;8.55e-14;39!CL:0000576;4.09e-13;48!CL:0000766;8.03e-10;69!CL:0002087;7.54e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.53e-24,168;CL:0000988,2.48e-24,177;CL:0000738,3.10e-24,136;CL:0000766,6.81e-24,72;CL:0002032,1.65e-22,161;CL:0000837,1.65e-22,161;CL:0000048,3.40e-22,427;CL:0000557,1.07e-21,67;CL:0000763,2.17e-21,108;CL:0000049,2.17e-21,108;CL:0000034,3.01e-21,441;CL:0000723,3.16e-21,433;CL:0000860,3.74e-20,42;CL:0002057,3.74e-20,42;CL:0000839,8.33e-20,66;CL:0002031,9.25e-20,120;CL:0002087,9.95e-20,115;CL:0002194,5.01e-19,59;CL:0000576,5.01e-19,59;CL:0000040,5.01e-19,59;CL:0000559,5.01e-19,59;CL:0002009,5.16e-19,61;CL:0002320,5.48e-19,361;CL:0000134,1.50e-18,354;CL:0000473,1.37e-17,48;CL:0000234,1.37e-17,48;CL:0000219,4.60e-16,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.04e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.22e-17!112;UBERON:0002384!4.35e-17!375;UBERON:0002390!5.89e-17!102;UBERON:0003061!5.89e-17!102;UBERON:0002204!1.48e-15!167;UBERON:0002371!1.23e-14!80;UBERON:0001474!6.93e-14!86;UBERON:0004765!8.34e-14!101;UBERON:0001434!8.34e-14!101;UBERON:0002405!2.85e-11!115;UBERON:0003081!3.51e-09!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.86e-20,108;UBERON:0002390,1.43e-19,98;UBERON:0003061,1.43e-19,98;UBERON:0002371,1.08e-18,76;UBERON:0002405,6.67e-18,93;UBERON:0001474,9.07e-18,82;UBERON:0002384,9.69e-18,371;UBERON:0004765,1.02e-17,90;UBERON:0001434,4.41e-16,100;UBERON:0002204,3.87e-15,167;UBERON:0003081,1.19e-10,203;UBERON:0000926,6.37e-08,315;UBERON:0004120,6.37e-08,315;UBERON:0006603,6.37e-08,315 | |||
|phase1_expression=3.08853244759946,1.07050261945492,2.11431606143957,0,0.893922188854576,2.61701557230111,0,1.26343974685366,0.261185628199839,0.245733936501509,0,0.655324116390517,0,1.8564952944007,1.32558950291166,2.6893005858071,1.80808358407193,1.46062018077475,1.46379839637152,0.369363174230364,0.408001382488506,0.313454721478088,1.43117993565528,0.547497700291537,1.38096903554283,1.06978768047132,1.06730766284929,0.944529375764151,0.393364276848904,3.0706351847777,1.39334510984468,0,0.30120591877825,0,4.8029664359787,2.13253848731132,1.17440175733939,6.09394949385065,6.81851121398482,3.90619567288533,2.68698569087909,0.971680998056939,2.31818010870768,1.01778767145695,2.64513160582167,1.94067248950253,3.0215774797739,2.05583944010913,3.71647645074124,10.0692337312753,13.3203567395132,13.4794871036494,3.7922024881028,1.93645405075148,4.06279459783025,2.07066573496865,3.27487380069415,4.49446968890169,3.97909060082173,4.49300637906531,2.55734850319616,9.56568770541477,9.57425556583833,9.37694451171927,2.03146467040009,3.97169657283798,3.73693349397345,9.04495194924276,14.0800387973454,13.2485195270121,0,2.94622108790052,3.79754864929061,1.47878700418359,1.70083439972035,0.628975936525128,1.46027220490444,1.20141514273205,2.57160938715328,0.570025487482497,0.79566670879636,0.182664153764634,1.75996244461323,1.63841583378639,2.66852776159066,1.70692089026603,0.800791974072025,2.29900975981793,0.661044872784862,0.954053754535364,1.70763890732835,4.11066032559657,3.05818582500183,1.32171328579026,2.24203425192614,2.37045676297569,1.37696839079683,0.393010762749165,1.02800749499755,0.501559486172034,0.651844533267181,0.946895611469467,0,0.334231370655521,1.47302953737419,0.664601683750863,0.270803863765016,0.128091319725675,0.260118695119756,0.164437904603676,0,0.289803085735052,0.296573126324121,0.267540828089713,2.09071047609954,0.226618685395132,0.766440987203842,0.68725489096526,1.51811815211702,0.318565414324097,0,0,0.903450714466637,0.895906278080929,0,0.236777252044017,0.821127996921047,3.62892137804518,2.94184215361858,1.73789284659359,0,0.670700859703636,1.79007586580942,1.0843174571537,1.00267582127178,0.579386075843295,0.795285947051099,0.486634870302636,2.45790524626576,1.33037638477538,1.66886092816939,1.17881167947941,0,0,10.7100639906045,9.22887607686116,6.51494006542439,1.19245312152671,2.85997455390064,1.11437250398869,0,0.860234595106124,0.347140501607594,0.56530794192401,0.838998872419812,0.550236083880135,1.04497483268405,2.06733407335463,2.13459757612026,0,1.61131726843659,0,1.46437234528902,0.735326160691737,0,1.51809538082936,0.673588117878509,1.35133776579987,0,0.949265659568129,0.549605231791222,1.31780417436063,3.87780264148325,0,0.496971951695318,1.39293562831038,1.05927344650575,0.573673241497627,1.41867352879343,0.560677600142307,1.06748995729705,0.49333509683432,2.8008993185979,1.21239604862719,0.980771418680752,0.302714855289863,1.15235184896,0.234321431833797,0,0.570471821544449,0.298897361103602,0.939475989150119,0.323745888736263,0.842704840213491,1.42907919878425,1.59684612505298,0.723280468230358,1.18800285728205,0.494533858557114,0,0.718618141816238,0.841680569770331,1.87677779807946,1.10825646193673,0.438977620880838,0.919463387397059,1.20190447125277,0.907457465280168,0.717558542755448,1.2813443329114,0.635795703478686,0.300091096084402,0.618315175430633,0.257640540045629,0.930584281657949,0.337552664482532,0.487185025805993,1.00973509697646,1.38074847963449,1.61646056818812,0.710019185033229,1.30977727695932,2.20428770003634,0.386521706326594,1.09098448236334,1.14721838155602,0.365921118388786,0.662648841607426,0.929551542956147,0.829288440122964,0,0.36497735907583,0,1.28648187638577,1.38134921352481,0.928735856063958,0,0.236613600079688,0.337169380156203,0,0.330881918197182,0.217879444092406,0.474541238222193,0.134831308160164,0,0.38474715694639,1.4763109092493,0,0.8231480226628,0,0,0,1.18157981336281,0.441463099414651,0.368965315629341,0.857839051492628,0.219500570817251,0,0.301586917234893,1.01847289674383,0.325808305310325,0,4.3299402607582,1.04337364477569,0.821860859650752,1.15493158208859,0.925971025153221,1.71228737011138,0,0,0.738651018262192,0.702012795417713,1.33768046059855,0,1.34385702559088,0.992425680696705,0.268675568108545,0,0.383382679165211,3.94130590316755,1.32072651019839,2.07328115540772,1.58531948758658,1.64115163454294,0.571481048629521,0.381988425558278,0,0,1.54241239054985,1.20137223137567,3.71574362419752,0.448524337381443,2.1798003441664,1.68678057388185,1.80980402060889,3.57656445851882,1.690605505112,1.06375246633948,2.08014873822732,0.514414748524284,0,0.266422179016099,1.71573592389777,0.542621605391443,0.823240336780769,0.325736184293735,1.42156779497018,3.95975936466715,3.61727252471503,0,0.599837947092342,0,0.502257091432126,2.10833939483032,1.19812427745791,3.44585807502342,2.85273810081437,1.01346914667305,0.821905290201534,1.25342674267927,0.560425719967636,2.1673383622212,1.94064817373566,2.69520376187472,1.01637849688985,2.60279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| |||
|short_description=p6@PLDN | |||
}} |
Revision as of 23:21, 11 January 2014
Short description: | p6@PLDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PLDN_5end |
Coexpression cluster: | C3494_CD14_Dendritic_Eosinophils_Mast_Whole_Neutrophils_CD4 |
Association with transcript: | 12bp_to_ENST00000220531, NM_012388, uc001zvq.2, uc001zvr.2_5end |
EntrezGene: | PLDN |
HGNC: | 8549 |
UniProt: | Q9UL45B3KY40 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.53e-24 | 168 |
hematopoietic cell | 2.48e-24 | 177 |
leukocyte | 3.10e-24 | 136 |
myeloid leukocyte | 6.81e-24 | 72 |
hematopoietic oligopotent progenitor cell | 1.65e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.65e-22 | 161 |
multi fate stem cell | 3.40e-22 | 427 |
granulocyte monocyte progenitor cell | 1.07e-21 | 67 |
myeloid cell | 2.17e-21 | 108 |
common myeloid progenitor | 2.17e-21 | 108 |
stem cell | 3.01e-21 | 441 |
somatic stem cell | 3.16e-21 | 433 |
classical monocyte | 3.74e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.74e-20 | 42 |
myeloid lineage restricted progenitor cell | 8.33e-20 | 66 |
hematopoietic lineage restricted progenitor cell | 9.25e-20 | 120 |
nongranular leukocyte | 9.95e-20 | 115 |
monopoietic cell | 5.01e-19 | 59 |
monocyte | 5.01e-19 | 59 |
monoblast | 5.01e-19 | 59 |
promonocyte | 5.01e-19 | 59 |
macrophage dendritic cell progenitor | 5.16e-19 | 61 |
connective tissue cell | 5.48e-19 | 361 |
mesenchymal cell | 1.50e-18 | 354 |
defensive cell | 1.37e-17 | 48 |
phagocyte | 1.37e-17 | 48 |
motile cell | 4.60e-16 | 386 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 7.86e-20 | 108 |
hematopoietic system | 1.43e-19 | 98 |
blood island | 1.43e-19 | 98 |
bone marrow | 1.08e-18 | 76 |
immune system | 6.67e-18 | 93 |
bone element | 9.07e-18 | 82 |
connective tissue | 9.69e-18 | 371 |
skeletal element | 1.02e-17 | 90 |
skeletal system | 4.41e-16 | 100 |
musculoskeletal system | 3.87e-15 | 167 |
lateral plate mesoderm | 1.19e-10 | 203 |
mesoderm | 6.37e-08 | 315 |
mesoderm-derived structure | 6.37e-08 | 315 |
presumptive mesoderm | 6.37e-08 | 315 |