FFCP PHASE1:Hg19::chr20:47537811..47537823,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10564 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=15853 | |||
|TSSclassifier=not | |||
|UniProt=F5H3H3,Q59FR3,Q86TH5,Q9Y6D5 | |||
|association_with_transcript=-451bp_to_ENST00000538445,NM_006420,uc002xtx.3_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_6_at_ARFGEF2_5end | |||
|id=chr20:47537811..47537823,+ | |||
|ontology_enrichment_celltype=CL:0000766!4.89e-35!76;CL:0002057!7.90e-35!42;CL:0000860!3.06e-31!45;CL:0000557!1.48e-30!71;CL:0002009!1.03e-28!65;CL:0000839!1.73e-28!70;CL:0002194!2.19e-27!63;CL:0000576!2.19e-27!63;CL:0000040!2.19e-27!63;CL:0000559!2.19e-27!63;CL:0000763!2.23e-26!112;CL:0000049!2.23e-26!112;CL:0000738!2.18e-22!140;CL:0000037!2.98e-19!172;CL:0000566!2.98e-19!172;CL:0002032!3.31e-18!165;CL:0000837!3.31e-18!165;CL:0000988!3.51e-18!182;CL:0002031!8.39e-18!124;CL:0002087!1.44e-16!119;CL:0002393!1.94e-07!9;CL:0002397!1.94e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.54e-61;33!CL:0002057;1.54e-61;33!CL:0000473;9.51e-51;39!CL:0000234;9.51e-51;39!CL:0000576;2.00e-38;48!CL:0000766;7.03e-36;69!CL:0000763;1.05e-13;100!CL:0000738;1.77e-11;136!CL:0002087;1.41e-09;104!CL:0000771;3.76e-09;2!CL:0000094;5.97e-08;8!CL:0000097;2.97e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.13e-71,42;CL:0002057,2.13e-71,42;CL:0000473,1.82e-70,48;CL:0000234,1.82e-70,48;CL:0000766,9.48e-68,72;CL:0000557,2.59e-61,67;CL:0000839,1.24e-58,66;CL:0002009,2.25e-56,61;CL:0002194,9.70e-55,59;CL:0000576,9.70e-55,59;CL:0000040,9.70e-55,59;CL:0000559,9.70e-55,59;CL:0000763,8.71e-45,108;CL:0000049,8.71e-45,108;CL:0000738,8.55e-38,136;CL:0002031,1.65e-32,120;CL:0000037,9.10e-29,168;CL:0002032,1.27e-28,161;CL:0000837,1.27e-28,161;CL:0002087,3.62e-28,115;CL:0000988,8.18e-27,177;CL:0000134,2.58e-09,354;CL:0000771,3.64e-09,2;CL:0002320,5.99e-09,361;CL:0000219,2.65e-08,386;CL:0000094,7.59e-08,8;CL:0000097,3.79e-07,5;CL:0002028,3.79e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;3.71e-48;42!CL:0000049;2.18e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.47e-25!102;UBERON:0003061!8.47e-25!102;UBERON:0002371!1.44e-24!80;UBERON:0002193!3.54e-24!112;UBERON:0001474!2.50e-21!86;UBERON:0002405!1.24e-20!115;UBERON:0004765!3.52e-18!101;UBERON:0001434!3.52e-18!101;UBERON:0003081!8.18e-10!216;UBERON:0002204!1.50e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.19e-53,76;UBERON:0001474,1.28e-48,82;UBERON:0002390,1.10e-44,98;UBERON:0003061,1.10e-44,98;UBERON:0004765,1.46e-43,90;UBERON:0002405,6.91e-42,93;UBERON:0002193,9.83e-40,108;UBERON:0001434,2.29e-38,100;UBERON:0002204,5.03e-21,167;UBERON:0003081,1.67e-19,203;UBERON:0000926,6.98e-11,315;UBERON:0004120,6.98e-11,315;UBERON:0006603,6.98e-11,315;UBERON:0002384,1.89e-08,371 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,1.18009283054671,0.767658796194425,0.464448369948228,0,0,0,0,0,0,1.10799081706375,1.00272223735071,1.30206522429511,0,0,0.257575567634187,2.03557534291391,0,0.485168122375632,2.55671940596253,2.87817521615278,2.47765096716083,0.575384784644301,0.768482119587302,1.89185783910868,4.48169384957604,1.29096936716765,1.35426486594342,1.50593871634084,1.63743690034707,0.674170453335254,1.22433556948361,1.92557416245656,2.55734850319616,1.64925650093358,1.99463657621632,1.27867425159808,1.45104619314292,1.70215567407342,1.24564449799115,3.26623264833766,1.5644487552606,1.95469960234605,0.605399502633369,0.736555271975129,3.16462387440884,0.422510572623884,0.212604299965044,0.838634582033504,1.01095768031846,1.35159203557356,1.12507910687956,0.285012743741249,1.39241674039363,0.182664153764634,0,0,0,0,0,0,0,0,0,0,1.14681968437569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0.34362744548263,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0.534880391567015,0.144824403882799,2.43806866313962,0.670700859703636,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0.348259474598534,0,0,0.571994910780128,0,0,0,0.347140501607594,0.56530794192401,0.419499436209906,0.275118041940067,0.208994966536811,0.516833518338658,0.35576626268671,0,0,0,0,0.367663080345869,0.81014194788176,0.17859945656816,0.44905874525234,0.450445921933289,0,0,0,5.27121669744253,3.87780264148325,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0.635795703478686,0.300091096084402,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0.288732895522148,0,0.570762456703795,0,0,0,0.234004265139238,0.297262324577456,0,0,0.283550194484773,0,0,0,15.2725603747742,0,1.24396869324463,0.864719720501769,1.2624243342638,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0,0,0,0,0.07333828582095,0.387815147273333,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,1.00451418286425,2.10833939483032,0.239624855491583,0,0,0,0,0,0.112085143993527,0.197030760201927,0,0,0.254094624222463,0,0.773288812777695,0.167516265334349,0,0.749007023947182,0,2.07207756718018,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0.206768026122887,2.37285620900479,0.426910231213777,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0,0,0,0.200506470303285,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.096670718292122,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974853958525138,0,0,0,0,0.551365343546124,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313359791546046,0,0,0,0.201799707191048,0,0,0,0.223676107892416,0.333698283423817,0,0,0,0.270455678475983,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0.111308705022906,0.329607748453519,0.211125408127993,0,0,0,0.102268682502155,0.246169610922139,0,0,0,0.511572370226872,0.0986434056369336,2.3948309234694,0,0,0.463840490809256,0,0.7812832832557,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0.885741385813839,0.241192877250816,0,0.110579259931225,0,0.438770794307945,0,0,0.153900517007594,0,0,0,0,0,0.0915975934018623,0,0,0.31396051279005,0.166211681900156,0,0,0.167821586975843,0,0.158936578980379,0,0.163232808159148,0.141353071433941,0,0,0,0.611030144933625,0,0.123563938946503,0.104421949505455,0.067401132980677,0,0.234264445725339,0.182454789215666,0,0.485560759068186,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0.19871461170299,0.316553979779393,0,0,0,0,0,0,0,0,0.248505071130865,0,0,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0.0824158583811665,0.13480708770837,0,0,0.795229689809303,0.817220436669454,0,0,0,0.2249738915515,1.5476039091159,0.668245123238271,0,0,0,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,1.19730191562487,0.164185041498678,0.170388021785422,0,0,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0.314108192500469,0,1.34228891392159,1.1267183763585,0,0,0.124192805882767,1.24513771442608,0,0.303298235083296,0,0,0,0.144921028610825,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0.159296767163702,0,0.155262956876259,0,0.265841714557995,0,0.150257608997218,0,0,0,0.214821114084977,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0,0,0.530067437837643,0,0.168942440653073,0,0,0,0.138258436151731,0,0,0,0,0,1.90180911022764,0.59996218756479,0,0,0,0,0.139879507719444,0,0.255788742607303,0,0.471797825567689,0,0.169732529954025,1.06287460050841,0.867550349813015,0,0,0.0788617450012534,0,0,0,0.192687675289379,0,0.159633859057151,0,0.252071696221718,0.13831450492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| |||
|short_description=p6@ARFGEF2 | |||
}} |
Revision as of 11:52, 21 January 2014
Short description: | p6@ARFGEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ARFGEF2_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | -451bp_to_ENST00000538445, NM_006420, uc002xtx.3_5end |
EntrezGene: | ARFGEF2 |
HGNC: | 15853 |
UniProt: | F5H3H3Q59FR3Q86TH5Q9Y6D5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.13e-71 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.13e-71 | 42 |
defensive cell | 1.82e-70 | 48 |
phagocyte | 1.82e-70 | 48 |
myeloid leukocyte | 9.48e-68 | 72 |
granulocyte monocyte progenitor cell | 2.59e-61 | 67 |
myeloid lineage restricted progenitor cell | 1.24e-58 | 66 |
macrophage dendritic cell progenitor | 2.25e-56 | 61 |
monopoietic cell | 9.70e-55 | 59 |
monocyte | 9.70e-55 | 59 |
monoblast | 9.70e-55 | 59 |
promonocyte | 9.70e-55 | 59 |
myeloid cell | 8.71e-45 | 108 |
common myeloid progenitor | 8.71e-45 | 108 |
leukocyte | 8.55e-38 | 136 |
hematopoietic lineage restricted progenitor cell | 1.65e-32 | 120 |
hematopoietic stem cell | 9.10e-29 | 168 |
hematopoietic oligopotent progenitor cell | 1.27e-28 | 161 |
hematopoietic multipotent progenitor cell | 1.27e-28 | 161 |
nongranular leukocyte | 3.62e-28 | 115 |
hematopoietic cell | 8.18e-27 | 177 |
mesenchymal cell | 2.58e-09 | 354 |
eosinophil | 3.64e-09 | 2 |
connective tissue cell | 5.99e-09 | 361 |
motile cell | 2.65e-08 | 386 |
granulocyte | 7.59e-08 | 8 |
mast cell | 3.79e-07 | 5 |
basophil mast progenitor cell | 3.79e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.19e-53 | 76 |
bone element | 1.28e-48 | 82 |
hematopoietic system | 1.10e-44 | 98 |
blood island | 1.10e-44 | 98 |
skeletal element | 1.46e-43 | 90 |
immune system | 6.91e-42 | 93 |
hemolymphoid system | 9.83e-40 | 108 |
skeletal system | 2.29e-38 | 100 |
musculoskeletal system | 5.03e-21 | 167 |
lateral plate mesoderm | 1.67e-19 | 203 |
mesoderm | 6.98e-11 | 315 |
mesoderm-derived structure | 6.98e-11 | 315 |
presumptive mesoderm | 6.98e-11 | 315 |
connective tissue | 1.89e-08 | 371 |