UBERON:0005423: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005423 | |||
|is_a=UBERON:0000465 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=developing anatomical structure | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="developing structure" RELATED [];;"developmental structure" RELATED [];;"developmental tissue" RELATED [MIAA:0000019] | ||
|union_of= | |||
|xref=AEO:0000125;;EHDAA2:0003125;;FBbt:00007006;;MIAA:0000019 | |||
}} | }} |
Revision as of 11:36, 12 September 2014
Name: | developing anatomical structure | |
---|---|---|
Xrefs: |
| |
Synonyms: |
"developing structure" RELATED [] "developmental structure" RELATED [] "developmental tissue" RELATED [MIAA:0000019] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000465(material anatomical entity) |
---|
Children
is a: | UBERON:0000164 (primitive urogenital sinus),UBERON:0001048 (primordium),UBERON:0002050 (embryonic structure),UBERON:0002120 (pronephros),UBERON:0002329 (somite),UBERON:0003057 (chordal neural plate),UBERON:0003059 (presomitic mesoderm),UBERON:0003061 (blood island),UBERON:0003063 (prechordal plate),UBERON:0003064 (intermediate mesoderm),UBERON:0003068 (axial mesoderm),UBERON:0003076 (posterior neural tube),UBERON:0003080 (anterior neural tube),UBERON:0004139 (cardiogenic plate),UBERON:0004871 (somatic layer of lateral plate mesoderm),UBERON:0004872 (splanchnic layer of lateral plate mesoderm),UBERON:0004874 (somatopleure),UBERON:0004875 (nephrogenic cord),UBERON:0004876 (urogenital ridge),UBERON:0004880 (chordamesoderm),UBERON:0005061 (neural groove),UBERON:0005095 (kidney rudiment),UBERON:0005294 (genital ridge),UBERON:0005754 (rostral part of nephrogenic cord),UBERON:0005868 (maxillary prominence),UBERON:0005870 (olfactory pit),UBERON:0005876 (undifferentiated genital tubercle),UBERON:0005882 (neural tube alar plate),UBERON:0006238 (future brain),UBERON:0006241 (future spinal cord),UBERON:0006268 (notochordal process),UBERON:0006283 (future cardiac ventricle),UBERON:0006598 (presumptive structure),UBERON:0006777 (tectal plate),UBERON:0006965 (vascular cord),UBERON:0007238 (1st arch maxillary component),UBERON:0007645 (future meninx),UBERON:0007687 (kidney field),UBERON:0008425 (mammary ridge),UBERON:0008836 (liver bud),UBERON:0009123 (otic cup),UBERON:0009143 (esophageal region),UBERON:0009145 (pharyngeal region of foregut),UBERON:0010056 (future tongue),UBERON:0010092 (future metencephalon),UBERON:0010096 (future myelencephalon),UBERON:0010226 (future cardiac ventricle),UBERON:0010227 (future cardiac atrium),UBERON:0010312 (immature eye),UBERON:0012314 (embryonic facial prominence)... further results |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10055-101H1 (uterus, fetal, donor1)
- 10216-103G9 (chicken embryo whole body, day01 (HH7 1-3 somites))
- 10217-103H1 (chicken embryo whole body, day01 (HH7 2-3 somites))
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10233-103I8 (chicken leg buds, day03 (HH20))
- 10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1)
- 10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2)
- 10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN)
- 10774-110F9 (neuroectodermal tumor cell line:TASK1)
- 11534-120A4
... further results Mouse (Mus musculus)
- 10055-101H1 (uterus, fetal, donor1)
- 10216-103G9 (chicken embryo whole body, day01 (HH7 1-3 somites))
- 10217-103H1 (chicken embryo whole body, day01 (HH7 2-3 somites))
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10233-103I8 (chicken leg buds, day03 (HH20))
- 10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1)
- 10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2)
- 10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN)
- 10774-110F9 (neuroectodermal tumor cell line:TASK1)
- 11534-120A4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005423 (developing anatomical structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data