Personal tools

CL:0002202: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=epithelial cell of tracheobronchial tree
|name=epithelial cell of tracheobronchial tree
|namespace=cell
|namespace=FANTOM
|obo_creation_date=2010-09-02T02:09:14Z
|obo_creation_date=2010-09-02T02:09:14Z
|part_of=UBERON:0007196
|part_of=UBERON:0007196

Latest revision as of 16:41, 12 September 2014

Name:epithelial cell of tracheobronchial tree
Namespace:FANTOM
Definition:"An epithelial cell of the tracheobronchial tree." [GOC:tfm]
Xrefs:
links:
FMA:66816
Alt_id: CL:1000407
Created by:tmeehan
Creation date:2010-09-02T02:09:14Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002632(epithelial cell of lower respiratory tract)
part_of:UBERON:0007196(tracheobronchial tree)



Children


is a:CL:0000307 (tracheal epithelial cell),CL:0002328 (bronchial epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002202 (epithelial cell of tracheobronchial tree), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data