FFCP PHASE1:Hg19::chr12:28116049..28116068,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:28116049..28116068,- | |||
|coexpression_cluster_id=C812 | |||
|description=CAGE_peak_at_chr12:28116049..28116068,- | |description=CAGE_peak_at_chr12:28116049..28116068,- | ||
|id=chr12:28116049..28116068,- | |id=chr12:28116049..28116068,- | ||
|ontology_enrichment_celltype=CL:0002076!6.39e-22!43;CL:0002368!1.95e-17!13;CL:0000223!2.94e-14!59;CL:0000066!6.80e-12!254;CL:0000244!6.40e-11!4;CL:0000731!6.40e-11!4;CL:0002202!2.67e-09!9;CL:0002632!2.67e-09!9;CL:0002159!5.96e-09!13;CL:0002166!1.05e-08!3;CL:0002621!2.03e-08!3;CL:0000068!3.14e-08!3;CL:0000069!3.14e-08!3;CL:0000307!3.14e-08!3;CL:0000377!3.14e-08!3;CL:0002251!7.87e-08!21 | |ontology_enrichment_celltype=CL:0002076!6.39e-22!43;CL:0002368!1.95e-17!13;CL:0000223!2.94e-14!59;CL:0000066!6.80e-12!254;CL:0000244!6.40e-11!4;CL:0000731!6.40e-11!4;CL:0002202!2.67e-09!9;CL:0002632!2.67e-09!9;CL:0002159!5.96e-09!13;CL:0002166!1.05e-08!3;CL:0002621!2.03e-08!3;CL:0000068!3.14e-08!3;CL:0000069!3.14e-08!3;CL:0000307!3.14e-08!3;CL:0000377!3.14e-08!3;CL:0002251!7.87e-08!21 | ||
|ontology_enrichment_celltype_v019=CL:0000244;3.72e-22;4!CL:0000731;3.72e-22;4!CL:0002159;4.51e-17;14!CL:0002166;4.57e-14;3!CL:0002621;9.59e-14;3!CL:0002076;2.20e-12;42!CL:0002368;5.16e-12;13!CL:0002591;1.10e-10;1!CL:0000362;4.45e-10;9!CL:0000312;1.32e-08;5!CL:0000240;2.61e-07;6!CL:0000311;2.61e-07;6!CL:0000079;2.61e-07;6!CL:0000237;2.61e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,2.60e-22,4;CL:0000731,2.60e-22,4;CL:0002159,4.01e-17,14;CL:0002166,4.42e-14,3;CL:0002621,1.02e-13,3;CL:0002076,1.21e-13,42;CL:0002368,4.94e-12,13;CL:0000066,8.52e-11,253;CL:0002591,1.61e-10,1;CL:0000362,4.06e-10,9;CL:0000223,1.31e-09,58;CL:0000312,1.22e-08,5;CL:0000240,2.45e-07,6;CL:0000311,2.45e-07,6;CL:0000079,2.45e-07,6;CL:0000237,2.45e-07,6;CL:0000036,2.45e-07,6;CL:0000357,2.45e-07,6;CL:0000114,2.45e-07,6;CL:0002077,5.74e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000357;2.61e-07;6!CL:0000114;2.61e-07;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!6.07e-14!72;UBERON:0000365!1.23e-12!5;UBERON:0004119!3.07e-12!169;UBERON:0000925!3.07e-12!169;UBERON:0006595!3.07e-12!169;UBERON:0005911!6.60e-11!82;UBERON:0005910!1.91e-10!6;UBERON:0000161!5.92e-10!35;UBERON:0001949!2.03e-08!3;UBERON:0003729!8.17e-08!5;UBERON:0004807!8.23e-08!28;UBERON:0001828!1.26e-07!8;UBERON:0005157!1.49e-07!51;UBERON:0007196!1.50e-07!14;UBERON:0001558!1.50e-07!14;UBERON:0005153!1.57e-07!37;UBERON:0000065!1.61e-07!53;UBERON:0001007!2.39e-07!155;UBERON:0001555!2.39e-07!155;UBERON:0007026!2.39e-07!155 | |ontology_enrichment_uberon=UBERON:0001004!6.07e-14!72;UBERON:0000365!1.23e-12!5;UBERON:0004119!3.07e-12!169;UBERON:0000925!3.07e-12!169;UBERON:0006595!3.07e-12!169;UBERON:0005911!6.60e-11!82;UBERON:0005910!1.91e-10!6;UBERON:0000161!5.92e-10!35;UBERON:0001949!2.03e-08!3;UBERON:0003729!8.17e-08!5;UBERON:0004807!8.23e-08!28;UBERON:0001828!1.26e-07!8;UBERON:0005157!1.49e-07!51;UBERON:0007196!1.50e-07!14;UBERON:0001558!1.50e-07!14;UBERON:0005153!1.57e-07!37;UBERON:0000065!1.61e-07!53;UBERON:0001007!2.39e-07!155;UBERON:0001555!2.39e-07!155;UBERON:0007026!2.39e-07!155 | ||
|ontology_enrichment_uberon_v019=UBERON:0000486;7.53e-20;12!UBERON:0000365;7.44e-18;5!UBERON:0005910;5.56e-15;6!UBERON:0001949;9.59e-14;3!UBERON:0003729;7.17e-12;13!UBERON:0001828;2.85e-11;8!UBERON:0001708;8.85e-11;4!UBERON:0008895;8.85e-11;4!UBERON:0010371;2.40e-10;31!UBERON:0011159;8.50e-09;5!UBERON:0005911;1.33e-08;36!UBERON:0000161;3.52e-08;19!UBERON:0000166;3.52e-08;19!UBERON:0000344;8.88e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,5.58e-18,5;UBERON:0005910,4.38e-15,6;UBERON:0010188,5.30e-15,6;UBERON:0002539,5.30e-15,6;UBERON:0008816,5.30e-15,6;UBERON:0001949,1.02e-13,3;UBERON:0003102,6.19e-12,99;UBERON:0003729,6.77e-12,13;UBERON:0001828,3.07e-11,8;UBERON:0001708,8.64e-11,4;UBERON:0008895,8.64e-11,4;UBERON:0004119,2.58e-09,160;UBERON:0000925,2.58e-09,160;UBERON:0006595,2.58e-09,160;UBERON:0001004,3.85e-09,74;UBERON:0000161,4.48e-09,36;UBERON:0011159,8.34e-09,5;UBERON:0000344,8.56e-08,20;UBERON:0000033,1.27e-07,56;UBERON:0000166,4.25e-07,22;UBERON:0006554,6.81e-07,47;UBERON:0000153,8.20e-07,62;UBERON:0007811,8.20e-07,62;UBERON:0001008,9.70e-07,48 | |||
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| ||
|short_description=p@chr12:28116049..28116068,- | |short_description=p@chr12:28116049..28116068,- | ||
}} | }} |
Latest revision as of 07:55, 24 July 2015
Short description: | p@chr12:28116049..28116068, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:28116049..28116068, - |
Coexpression cluster: | C812_Prostate_Urothelial_Mallassezderived_Sebocyte_Keratinocyte_Gingival_Small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 2.60e-22 | 4 |
urothelial cell | 2.60e-22 | 4 |
general ecto-epithelial cell | 4.01e-17 | 14 |
epithelial cell of Malassez | 4.42e-14 | 3 |
gingival epithelial cell | 1.02e-13 | 3 |
endo-epithelial cell | 1.21e-13 | 42 |
respiratory epithelial cell | 4.94e-12 | 13 |
epithelial cell | 8.52e-11 | 253 |
smooth muscle cell of the pulmonary artery | 1.61e-10 | 1 |
epidermal cell | 4.06e-10 | 9 |
endodermal cell | 1.31e-09 | 58 |
keratinocyte | 1.22e-08 | 5 |
stratified squamous epithelial cell | 2.45e-07 | 6 |
keratin accumulating cell | 2.45e-07 | 6 |
stratified epithelial cell | 2.45e-07 | 6 |
keratinizing barrier epithelial cell | 2.45e-07 | 6 |
epithelial fate stem cell | 2.45e-07 | 6 |
stratified epithelial stem cell | 2.45e-07 | 6 |
surface ectodermal cell | 2.45e-07 | 6 |
ecto-epithelial cell | 5.74e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
urothelium | 5.58e-18 | 5 |
transitional epithelium | 4.38e-15 | 6 |
protuberance | 5.30e-15 | 6 |
pharyngeal arch | 5.30e-15 | 6 |
embryonic head | 5.30e-15 | 6 |
gingival epithelium | 1.02e-13 | 3 |
surface structure | 6.19e-12 | 99 |
mouth mucosa | 6.77e-12 | 13 |
gingiva | 3.07e-11 | 8 |
jaw skeleton | 8.64e-11 | 4 |
splanchnocranium | 8.64e-11 | 4 |
endoderm-derived structure | 2.58e-09 | 160 |
endoderm | 2.58e-09 | 160 |
presumptive endoderm | 2.58e-09 | 160 |
respiratory system | 3.85e-09 | 74 |
orifice | 4.48e-09 | 36 |
primary subdivision of cranial skeletal system | 8.34e-09 | 5 |
mucosa | 8.56e-08 | 20 |
head | 1.27e-07 | 56 |
oral opening | 4.25e-07 | 22 |
urinary system structure | 6.81e-07 | 47 |
anterior region of body | 8.20e-07 | 62 |
craniocervical region | 8.20e-07 | 62 |
renal system | 9.70e-07 | 48 |