FFCP PHASE1:Hg19::chr13:99349888..99349893,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:99349888..99349893,+ | |||
|coexpression_cluster_id=C1711 | |coexpression_cluster_id=C1711 | ||
|description=CAGE_peak_at_chr13:99349888..99349893,+ | |description=CAGE_peak_at_chr13:99349888..99349893,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000128!1.10e-24!7;CL:0000126!1.10e-24!7;CL:0000127!1.10e-24!7;CL:0002453!1.10e-24!7;CL:0002319!2.21e-19!25;CL:0002605!1.03e-15!3;CL:0000221!8.23e-15!71;CL:0000064!2.02e-14!3;CL:0005012!2.02e-14!3;CL:0000067!2.02e-14!3;CL:0002304!2.02e-14!3;CL:0000243!6.29e-13!15;CL:0000125!6.29e-13!15;CL:0000030!6.29e-13!15;CL:0000339!6.29e-13!15;CL:0000133!3.53e-12!59;CL:0000095!1.84e-11!17;CL:0000123!1.84e-11!17;CL:0000047!5.82e-10!8;CL:0000540!7.32e-08!6;CL:0000031!7.32e-08!6;CL:0000404!7.32e-08!6;CL:0002621!3.54e-07!3;CL:0002166!3.77e-07!3;CL:0002603!4.13e-07!3;CL:0000220!6.82e-07!246;CL:0002321!8.57e-07!248 | |ontology_enrichment_celltype=CL:0000128!1.10e-24!7;CL:0000126!1.10e-24!7;CL:0000127!1.10e-24!7;CL:0002453!1.10e-24!7;CL:0002319!2.21e-19!25;CL:0002605!1.03e-15!3;CL:0000221!8.23e-15!71;CL:0000064!2.02e-14!3;CL:0005012!2.02e-14!3;CL:0000067!2.02e-14!3;CL:0002304!2.02e-14!3;CL:0000243!6.29e-13!15;CL:0000125!6.29e-13!15;CL:0000030!6.29e-13!15;CL:0000339!6.29e-13!15;CL:0000133!3.53e-12!59;CL:0000095!1.84e-11!17;CL:0000123!1.84e-11!17;CL:0000047!5.82e-10!8;CL:0000540!7.32e-08!6;CL:0000031!7.32e-08!6;CL:0000404!7.32e-08!6;CL:0002621!3.54e-07!3;CL:0002166!3.77e-07!3;CL:0002603!4.13e-07!3;CL:0000220!6.82e-07!246;CL:0002321!8.57e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.11e-98;3!CL:0000128;2.17e-75;7!CL:0000126;2.17e-75;7!CL:0000127;2.17e-75;7!CL:0000243;1.43e-31;15!CL:0000125;1.43e-31;15!CL:0000095;2.49e-28;17!CL:0002319;3.71e-20;25!CL:0000064;2.89e-12;3!CL:0000067;2.89e-12;3!CL:0005012;2.89e-12;3!CL:0002304;2.89e-12;3!CL:0002166;2.89e-12;3 | |ontology_enrichment_celltype_v019=CL:0002605;1.11e-98;3!CL:0000128;2.17e-75;7!CL:0000126;2.17e-75;7!CL:0000127;2.17e-75;7!CL:0000243;1.43e-31;15!CL:0000125;1.43e-31;15!CL:0000095;2.49e-28;17!CL:0002319;3.71e-20;25!CL:0000064;2.89e-12;3!CL:0000067;2.89e-12;3!CL:0005012;2.89e-12;3!CL:0002304;2.89e-12;3!CL:0002166;2.89e-12;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.55e-98,3;CL:0000128,2.17e-75,7;CL:0000126,2.17e-75,7;CL:0000127,2.17e-75,7;CL:0002453,2.17e-75,7;CL:0000243,1.43e-31,15;CL:0000125,1.43e-31,15;CL:0000030,1.43e-31,15;CL:0000339,1.43e-31,15;CL:0000095,2.49e-28,17;CL:0000123,2.49e-28,17;CL:0002319,3.71e-20,25;CL:0000221,1.82e-16,72;CL:0000133,5.12e-14,59;CL:0000333,6.71e-13,41;CL:0000064,2.59e-12,3;CL:0000067,2.59e-12,3;CL:0005012,2.59e-12,3;CL:0002304,2.59e-12,3;CL:0002166,3.24e-12,3 | |||
|ontology_enrichment_development_v019=CL:0000339;1.43e-31;15!CL:0000133;4.23e-12;59!CL:0000221;9.24e-12;72 | |ontology_enrichment_development_v019=CL:0000339;1.43e-31;15!CL:0000133;4.23e-12;59!CL:0000221;9.24e-12;72 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001778!2.02e-14!3;UBERON:0001775!2.02e-14!3;UBERON:0000488!6.12e-11!4;UBERON:0000924!9.14e-08!173;UBERON:0006601!9.14e-08!173;UBERON:0002203!1.94e-07!6;UBERON:0001768!1.94e-07!6;UBERON:0004121!3.47e-07!169;UBERON:0001949!3.54e-07!3;UBERON:0002200!6.29e-07!11;UBERON:0006876!6.29e-07!11;UBERON:0001017!7.91e-07!82;UBERON:0007625!7.97e-07!11 | |ontology_enrichment_uberon=UBERON:0001778!2.02e-14!3;UBERON:0001775!2.02e-14!3;UBERON:0000488!6.12e-11!4;UBERON:0000924!9.14e-08!173;UBERON:0006601!9.14e-08!173;UBERON:0002203!1.94e-07!6;UBERON:0001768!1.94e-07!6;UBERON:0004121!3.47e-07!169;UBERON:0001949!3.54e-07!3;UBERON:0002200!6.29e-07!11;UBERON:0006876!6.29e-07!11;UBERON:0001017!7.91e-07!82;UBERON:0007625!7.97e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;2.89e-12;3!UBERON:0001775;2.89e-12;3!UBERON:0000956;3.25e-12;25!UBERON:0000203;3.25e-12;25!UBERON:0002791;3.73e-10;32!UBERON:0001869;3.73e-10;32!UBERON:0003528;1.27e-09;34!UBERON:0002020;1.27e-09;34!UBERON:0001893;1.27e-09;34!UBERON:0001708;1.57e-09;4!UBERON:0000488;1.57e-09;4!UBERON:0008895;1.57e-09;4!UBERON:0011159;7.01e-08;5!UBERON:0002203;8.97e-07;6!UBERON:0001768;8.97e-07;6!UBERON:0002200;8.97e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0001778;2.89e-12;3!UBERON:0001775;2.89e-12;3!UBERON:0000956;3.25e-12;25!UBERON:0000203;3.25e-12;25!UBERON:0002791;3.73e-10;32!UBERON:0001869;3.73e-10;32!UBERON:0003528;1.27e-09;34!UBERON:0002020;1.27e-09;34!UBERON:0001893;1.27e-09;34!UBERON:0001708;1.57e-09;4!UBERON:0000488;1.57e-09;4!UBERON:0008895;1.57e-09;4!UBERON:0011159;7.01e-08;5!UBERON:0002203;8.97e-07;6!UBERON:0001768;8.97e-07;6!UBERON:0002200;8.97e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,2.59e-12,3;UBERON:0001775,2.59e-12,3;UBERON:0000956,3.38e-12,25;UBERON:0000203,3.38e-12,25;UBERON:0002791,9.04e-10,32;UBERON:0001869,9.04e-10,32;UBERON:0000488,1.44e-09,4;UBERON:0001708,1.70e-09,4;UBERON:0008895,1.70e-09,4;UBERON:0003528,2.97e-09,34;UBERON:0002020,2.97e-09,34;UBERON:0001893,2.97e-09,34;UBERON:0003056,4.34e-09,61;UBERON:0000955,3.92e-08,68;UBERON:0006238,3.92e-08,68;UBERON:0011159,7.49e-08,5;UBERON:0002780,7.94e-08,41;UBERON:0001890,7.94e-08,41;UBERON:0003080,7.94e-08,41;UBERON:0006240,7.94e-08,41;UBERON:0001017,6.23e-07,81;UBERON:0003075,6.53e-07,82;UBERON:0007284,6.53e-07,82;UBERON:0002203,8.48e-07,6;UBERON:0001768,8.48e-07,6;UBERON:0002200,8.48e-07,6;UBERON:0010188,9.49e-07,6;UBERON:0002539,9.49e-07,6;UBERON:0008816,9.49e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0.313454721478088,2.57612388417951,2.32686522623903,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41802225746102,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,1.00789276919316,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.86352311006033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0.51595809741485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0.313454721478088,2.57612388417951,2.32686522623903,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41802225746102,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,1.00789276919316,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.86352311006033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0.51595809741485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:99349888..99349893,+ | |short_description=p@chr13:99349888..99349893,+ | ||
}} | }} |
Latest revision as of 17:41, 24 July 2015
Short description: | p@chr13:99349888..99349893, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:99349888..99349893, + |
Coexpression cluster: | C1711_astrocytoma_Astrocyte_Neural_Wilms_acute_Ciliary_Lens |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.55e-98 | 3 |
oligodendrocyte | 2.17e-75 | 7 |
macroglial cell | 2.17e-75 | 7 |
astrocyte | 2.17e-75 | 7 |
oligodendrocyte precursor cell | 2.17e-75 | 7 |
glial cell (sensu Vertebrata) | 1.43e-31 | 15 |
glial cell | 1.43e-31 | 15 |
glioblast | 1.43e-31 | 15 |
glioblast (sensu Vertebrata) | 1.43e-31 | 15 |
neuron associated cell | 2.49e-28 | 17 |
neuron associated cell (sensu Vertebrata) | 2.49e-28 | 17 |
neural cell | 3.71e-20 | 25 |
ectodermal cell | 1.82e-16 | 72 |
neurectodermal cell | 5.12e-14 | 59 |
migratory neural crest cell | 6.71e-13 | 41 |
ciliated cell | 2.59e-12 | 3 |
ciliated epithelial cell | 2.59e-12 | 3 |
multi-ciliated epithelial cell | 2.59e-12 | 3 |
non-pigmented ciliary epithelial cell | 2.59e-12 | 3 |
epithelial cell of Malassez | 3.24e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 2.59e-12 | 3 |
ciliary body | 2.59e-12 | 3 |
cerebral cortex | 3.38e-12 | 25 |
pallium | 3.38e-12 | 25 |
regional part of telencephalon | 9.04e-10 | 32 |
cerebral hemisphere | 9.04e-10 | 32 |
atypical epithelium | 1.44e-09 | 4 |
jaw skeleton | 1.70e-09 | 4 |
splanchnocranium | 1.70e-09 | 4 |
brain grey matter | 2.97e-09 | 34 |
gray matter | 2.97e-09 | 34 |
telencephalon | 2.97e-09 | 34 |
pre-chordal neural plate | 4.34e-09 | 61 |
brain | 3.92e-08 | 68 |
future brain | 3.92e-08 | 68 |
primary subdivision of cranial skeletal system | 7.49e-08 | 5 |
regional part of forebrain | 7.94e-08 | 41 |
forebrain | 7.94e-08 | 41 |
anterior neural tube | 7.94e-08 | 41 |
future forebrain | 7.94e-08 | 41 |
central nervous system | 6.23e-07 | 81 |
neural plate | 6.53e-07 | 82 |
presumptive neural plate | 6.53e-07 | 82 |
vasculature of eye | 8.48e-07 | 6 |
uvea | 8.48e-07 | 6 |
vasculature of head | 8.48e-07 | 6 |
protuberance | 9.49e-07 | 6 |
pharyngeal arch | 9.49e-07 | 6 |
embryonic head | 9.49e-07 | 6 |