FFCP PHASE1:Hg19::chr18:21485558..21485596,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:21485558..21485596,- | |||
|coexpression_cluster_id=C363 | |coexpression_cluster_id=C363 | ||
|description=CAGE_peak_at_chr18:21485558..21485596,- | |description=CAGE_peak_at_chr18:21485558..21485596,- | ||
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|ontology_enrichment_celltype=CL:0000066!1.44e-23!254;CL:0002076!8.08e-20!43;CL:0000223!7.19e-13!59;CL:0002159!8.95e-12!13;CL:0002251!1.74e-09!21;CL:0002621!4.78e-09!3;CL:0002166!5.88e-09!3;CL:0002368!8.48e-09!13;CL:0000349!1.00e-08!3;CL:0002577!1.00e-08!3;CL:0002541!2.07e-08!3;CL:0002077!5.42e-07!33 | |ontology_enrichment_celltype=CL:0000066!1.44e-23!254;CL:0002076!8.08e-20!43;CL:0000223!7.19e-13!59;CL:0002159!8.95e-12!13;CL:0002251!1.74e-09!21;CL:0002621!4.78e-09!3;CL:0002166!5.88e-09!3;CL:0002368!8.48e-09!13;CL:0000349!1.00e-08!3;CL:0002577!1.00e-08!3;CL:0002541!2.07e-08!3;CL:0002077!5.42e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0002621;2.79e-26;3!CL:0002166;6.26e-26;3!CL:0002577;3.36e-25;3!CL:0002076;1.57e-16;42!CL:0000349;3.49e-15;19!CL:0002159;5.80e-15;14!CL:0000240;3.96e-13;6!CL:0000311;3.96e-13;6!CL:0000079;3.96e-13;6!CL:0000237;3.96e-13;6!CL:0002541;4.22e-12;3!CL:0002368;2.67e-10;13!CL:0002327;1.49e-09;4!CL:0002336;1.55e-09;1!CL:0002261;1.55e-09;1!CL:0002170;1.55e-09;1!CL:0000312;1.10e-07;5!CL:0002251;5.84e-07;20 | |ontology_enrichment_celltype_v019=CL:0002621;2.79e-26;3!CL:0002166;6.26e-26;3!CL:0002577;3.36e-25;3!CL:0002076;1.57e-16;42!CL:0000349;3.49e-15;19!CL:0002159;5.80e-15;14!CL:0000240;3.96e-13;6!CL:0000311;3.96e-13;6!CL:0000079;3.96e-13;6!CL:0000237;3.96e-13;6!CL:0002541;4.22e-12;3!CL:0002368;2.67e-10;13!CL:0002327;1.49e-09;4!CL:0002336;1.55e-09;1!CL:0002261;1.55e-09;1!CL:0002170;1.55e-09;1!CL:0000312;1.10e-07;5!CL:0002251;5.84e-07;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0002621,2.91e-26,3;CL:0002166,5.75e-26,3;CL:0002577,3.36e-25,3;CL:0002076,3.38e-18,42;CL:0000349,3.54e-15,19;CL:0002159,5.72e-15,14;CL:0000240,3.97e-13,6;CL:0000311,3.97e-13,6;CL:0000079,3.97e-13,6;CL:0000237,3.97e-13,6;CL:0000036,3.97e-13,6;CL:0000357,3.97e-13,6;CL:0000114,3.97e-13,6;CL:0000223,9.41e-13,58;CL:0002541,4.22e-12,3;CL:0000066,4.01e-11,253;CL:0002368,2.70e-10,13;CL:0002336,1.48e-09,1;CL:0002261,1.48e-09,1;CL:0002170,1.48e-09,1;CL:0002327,1.49e-09,4;CL:0000312,1.12e-07,5;CL:0002251,5.84e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000357;3.96e-13;6!CL:0000114;3.96e-13;6!CL:0000223;1.17e-07;58 | |ontology_enrichment_development_v019=CL:0000357;3.96e-13;6!CL:0000114;3.96e-13;6!CL:0000223;1.17e-07;58 | ||
|ontology_enrichment_disease=DOID:1749!4.58e-09!14 | |ontology_enrichment_disease=DOID:1749!4.58e-09!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.40e-23!14;UBERON:0000158!1.40e-23!14;UBERON:0003124!3.06e-17!7;UBERON:0000478!1.76e-12!24;UBERON:0001987!1.59e-10!4;UBERON:0004340!1.59e-10!4;UBERON:0004923!2.70e-10!57;UBERON:0001949!4.78e-09!3;UBERON:0000305!8.66e-09!7;UBERON:0000476!2.07e-08!3;UBERON:0000920!2.07e-08!3;UBERON:0004119!4.41e-08!169;UBERON:0000925!4.41e-08!169;UBERON:0006595!4.41e-08!169;UBERON:0004871!1.24e-07!8;UBERON:0000161!3.42e-07!35;UBERON:0001708!8.88e-07!4;UBERON:0001704!8.88e-07!4 | |ontology_enrichment_uberon=UBERON:0005631!1.40e-23!14;UBERON:0000158!1.40e-23!14;UBERON:0003124!3.06e-17!7;UBERON:0000478!1.76e-12!24;UBERON:0001987!1.59e-10!4;UBERON:0004340!1.59e-10!4;UBERON:0004923!2.70e-10!57;UBERON:0001949!4.78e-09!3;UBERON:0000305!8.66e-09!7;UBERON:0000476!2.07e-08!3;UBERON:0000920!2.07e-08!3;UBERON:0004119!4.41e-08!169;UBERON:0000925!4.41e-08!169;UBERON:0006595!4.41e-08!169;UBERON:0004871!1.24e-07!8;UBERON:0000161!3.42e-07!35;UBERON:0001708!8.88e-07!4;UBERON:0001704!8.88e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.79e-26;3!UBERON:0001708;1.30e-19;4!UBERON:0008895;1.30e-19;4!UBERON:0001987;4.55e-19;4!UBERON:0011159;8.20e-16;5!UBERON:0003124;4.22e-12;3!UBERON:0000920;4.22e-12;3!UBERON:0000478;6.25e-12;24!UBERON:0000486;1.33e-11;12!UBERON:0003929;1.33e-11;7!UBERON:0003729;1.22e-10;13!UBERON:0003350;3.25e-10;8!UBERON:0001828;3.25e-10;8!UBERON:0001911;1.49e-09;4!UBERON:0005631;5.06e-08;10!UBERON:0000158;5.06e-08;10!UBERON:0011137;1.83e-07;11!UBERON:0010323;1.83e-07;11!UBERON:0000344;5.84e-07;20 | |ontology_enrichment_uberon_v019=UBERON:0001949;2.79e-26;3!UBERON:0001708;1.30e-19;4!UBERON:0008895;1.30e-19;4!UBERON:0001987;4.55e-19;4!UBERON:0011159;8.20e-16;5!UBERON:0003124;4.22e-12;3!UBERON:0000920;4.22e-12;3!UBERON:0000478;6.25e-12;24!UBERON:0000486;1.33e-11;12!UBERON:0003929;1.33e-11;7!UBERON:0003729;1.22e-10;13!UBERON:0003350;3.25e-10;8!UBERON:0001828;3.25e-10;8!UBERON:0001911;1.49e-09;4!UBERON:0005631;5.06e-08;10!UBERON:0000158;5.06e-08;10!UBERON:0011137;1.83e-07;11!UBERON:0010323;1.83e-07;11!UBERON:0000344;5.84e-07;20 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,2.48e-29,7;UBERON:0001949,2.91e-26,3;UBERON:0005631,9.72e-21,14;UBERON:0000158,9.72e-21,14;UBERON:0001708,1.22e-19,4;UBERON:0008895,1.22e-19,4;UBERON:0001987,4.55e-19,4;UBERON:0004340,4.55e-19,4;UBERON:0011159,7.80e-16,5;UBERON:0010188,2.73e-13,6;UBERON:0002539,2.73e-13,6;UBERON:0008816,2.73e-13,6;UBERON:0000920,4.22e-12,3;UBERON:0000478,6.31e-12,24;UBERON:0004923,4.92e-11,66;UBERON:0003729,1.22e-10,13;UBERON:0003350,3.30e-10,8;UBERON:0001828,3.30e-10,8;UBERON:0001911,1.49e-09,4;UBERON:0005333,1.49e-09,4;UBERON:0008425,1.49e-09,4;UBERON:0005311,1.49e-09,4;UBERON:0010323,1.79e-07,11;UBERON:0003102,5.81e-07,99;UBERON:0000344,5.84e-07,20;UBERON:0003100,7.72e-07,41 | |||
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| ||
|short_description=p@chr18:21485558..21485596,- | |short_description=p@chr18:21485558..21485596,- | ||
}} | }} |
Latest revision as of 00:00, 26 July 2015
Short description: | p@chr18:21485558..21485596, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:21485558..21485596, - |
Coexpression cluster: | C363_Mallassezderived_Gingival_Keratinocyte_Mammary_Prostate_Small_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 2.91e-26 | 3 |
epithelial cell of Malassez | 5.75e-26 | 3 |
placental epithelial cell | 3.36e-25 | 3 |
endo-epithelial cell | 3.38e-18 | 42 |
extraembryonic cell | 3.54e-15 | 19 |
general ecto-epithelial cell | 5.72e-15 | 14 |
stratified squamous epithelial cell | 3.97e-13 | 6 |
keratin accumulating cell | 3.97e-13 | 6 |
stratified epithelial cell | 3.97e-13 | 6 |
keratinizing barrier epithelial cell | 3.97e-13 | 6 |
epithelial fate stem cell | 3.97e-13 | 6 |
stratified epithelial stem cell | 3.97e-13 | 6 |
surface ectodermal cell | 3.97e-13 | 6 |
endodermal cell | 9.41e-13 | 58 |
chorionic membrane mesenchymal stem cell | 4.22e-12 | 3 |
epithelial cell | 4.01e-11 | 253 |
respiratory epithelial cell | 2.70e-10 | 13 |
buccal mucosa cell | 1.48e-09 | 1 |
endothelial cell of viscerocranial mucosa | 1.48e-09 | 1 |
keratinized cell of the oral mucosa | 1.48e-09 | 1 |
mammary gland epithelial cell | 1.49e-09 | 4 |
keratinocyte | 1.12e-07 | 5 |
epithelial cell of alimentary canal | 5.84e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
chorion | 2.48e-29 | 7 |
gingival epithelium | 2.91e-26 | 3 |
extraembryonic membrane | 9.72e-21 | 14 |
membranous layer | 9.72e-21 | 14 |
jaw skeleton | 1.22e-19 | 4 |
splanchnocranium | 1.22e-19 | 4 |
placenta | 4.55e-19 | 4 |
allantois | 4.55e-19 | 4 |
primary subdivision of cranial skeletal system | 7.80e-16 | 5 |
protuberance | 2.73e-13 | 6 |
pharyngeal arch | 2.73e-13 | 6 |
embryonic head | 2.73e-13 | 6 |
egg chorion | 4.22e-12 | 3 |
extraembryonic structure | 6.31e-12 | 24 |
organ component layer | 4.92e-11 | 66 |
mouth mucosa | 1.22e-10 | 13 |
epithelium of mucosa | 3.30e-10 | 8 |
gingiva | 3.30e-10 | 8 |
mammary gland | 1.49e-09 | 4 |
mammary bud | 1.49e-09 | 4 |
mammary ridge | 1.49e-09 | 4 |
mammary placode | 1.49e-09 | 4 |
cranial skeletal system | 1.79e-07 | 11 |
surface structure | 5.81e-07 | 99 |
mucosa | 5.84e-07 | 20 |
female organism | 7.72e-07 | 41 |