FFCP PHASE1:Hg19::chr19:12903127..12903178,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:12903127..12903178,- to FFCP PHASE1:Hg19::chr19:12903127..12903178,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=449bp_to_CU678639,CU679368_5end | |||
|cluster_id=chr19:12903127..12903178,- | |||
|coexpression_cluster_id=C1809 | |||
|description=CAGE_peak_1_at_CU678639_5end,CAGE_peak_1_at_CU679368_5end | |||
|id=chr19:12903127..12903178,- | |||
|ontology_enrichment_celltype=CL:0000766!1.34e-19!76;CL:0000738!1.93e-17!140;CL:0000839!2.13e-17!70;CL:0000860!5.36e-17!45;CL:0002057!5.71e-17!42;CL:0002009!6.13e-17!65;CL:0002194!6.47e-17!63;CL:0000576!6.47e-17!63;CL:0000040!6.47e-17!63;CL:0000559!6.47e-17!63;CL:0000557!1.36e-16!71;CL:0002087!5.20e-16!119;CL:0002031!7.08e-16!124;CL:0000037!1.09e-10!172;CL:0000566!1.09e-10!172;CL:0002032!7.65e-10!165;CL:0000837!7.65e-10!165;CL:0000988!9.13e-10!182;CL:0000763!3.92e-09!112;CL:0000049!3.92e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.10e-13;33!CL:0002057;2.10e-13;33!CL:0000473;7.88e-13;39!CL:0000234;7.88e-13;39!CL:0000576;5.51e-12;48!CL:0000766;3.52e-11;69!CL:0002087;9.12e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.05e-22,72;CL:0000473,6.57e-22,48;CL:0000234,6.57e-22,48;CL:0000738,3.42e-21,136;CL:0000860,4.05e-20,42;CL:0002057,4.05e-20,42;CL:0000839,2.54e-19,66;CL:0002194,2.85e-19,59;CL:0000576,2.85e-19,59;CL:0000040,2.85e-19,59;CL:0000559,2.85e-19,59;CL:0002087,3.23e-19,115;CL:0002009,5.59e-19,61;CL:0000557,7.80e-19,67;CL:0002031,2.28e-18,120;CL:0000037,8.45e-13,168;CL:0000988,2.03e-12,177;CL:0002032,1.00e-11,161;CL:0000837,1.00e-11,161;CL:0000763,4.10e-10,108;CL:0000049,4.10e-10,108;CL:0002393,2.76e-07,9;CL:0002397,2.76e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.16e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.27e-22!102;UBERON:0003061!4.27e-22!102;UBERON:0002193!2.30e-20!112;UBERON:0002371!7.81e-16!80;UBERON:0001474!5.10e-14!86;UBERON:0004765!3.85e-12!101;UBERON:0001434!3.85e-12!101;UBERON:0002405!7.49e-12!115;UBERON:0000178!8.66e-08!15;UBERON:0000179!8.66e-08!15;UBERON:0000463!8.66e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.74e-08;15!UBERON:0000179;2.74e-08;15!UBERON:0000463;2.74e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.80e-24,98;UBERON:0003061,5.80e-24,98;UBERON:0002193,1.68e-22,108;UBERON:0002371,2.26e-17,76;UBERON:0004765,3.68e-16,90;UBERON:0002405,8.87e-16,93;UBERON:0001474,2.36e-15,82;UBERON:0001434,3.95e-14,100;UBERON:0000178,6.85e-09,15;UBERON:0000179,6.85e-09,15;UBERON:0000463,6.85e-09,15;UBERON:0003081,5.54e-07,203 | |||
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| ||
|short_description=p1@CU678639,p1@CU679368 | |||
}} | }} |
Latest revision as of 03:48, 26 July 2015
Short description: | p1@CU678639, p1@CU679368 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CU678639_5end, CAGE_peak_1_at_CU679368_5end |
Coexpression cluster: | C1809_CD4_Peripheral_normal_Neutrophils_CD8_Natural_CD14 |
Association with transcript: | 449bp_to_CU678639, CU679368_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.05e-22 | 72 |
defensive cell | 6.57e-22 | 48 |
phagocyte | 6.57e-22 | 48 |
leukocyte | 3.42e-21 | 136 |
classical monocyte | 4.05e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.05e-20 | 42 |
myeloid lineage restricted progenitor cell | 2.54e-19 | 66 |
monopoietic cell | 2.85e-19 | 59 |
monocyte | 2.85e-19 | 59 |
monoblast | 2.85e-19 | 59 |
promonocyte | 2.85e-19 | 59 |
nongranular leukocyte | 3.23e-19 | 115 |
macrophage dendritic cell progenitor | 5.59e-19 | 61 |
granulocyte monocyte progenitor cell | 7.80e-19 | 67 |
hematopoietic lineage restricted progenitor cell | 2.28e-18 | 120 |
hematopoietic stem cell | 8.45e-13 | 168 |
hematopoietic cell | 2.03e-12 | 177 |
hematopoietic oligopotent progenitor cell | 1.00e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.00e-11 | 161 |
myeloid cell | 4.10e-10 | 108 |
common myeloid progenitor | 4.10e-10 | 108 |
intermediate monocyte | 2.76e-07 | 9 |
CD14-positive, CD16-positive monocyte | 2.76e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.80e-24 | 98 |
blood island | 5.80e-24 | 98 |
hemolymphoid system | 1.68e-22 | 108 |
bone marrow | 2.26e-17 | 76 |
skeletal element | 3.68e-16 | 90 |
immune system | 8.87e-16 | 93 |
bone element | 2.36e-15 | 82 |
skeletal system | 3.95e-14 | 100 |
blood | 6.85e-09 | 15 |
haemolymphatic fluid | 6.85e-09 | 15 |
organism substance | 6.85e-09 | 15 |
lateral plate mesoderm | 5.54e-07 | 203 |