FFCP PHASE1:Hg19::chr19:884982..884988,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:884982..884988,- | |||
|coexpression_cluster_id=C159 | |coexpression_cluster_id=C159 | ||
|description=CAGE_peak_at_chr19:884982..884988,- | |description=CAGE_peak_at_chr19:884982..884988,- | ||
|id=chr19:884982..884988,- | |id=chr19:884982..884988,- | ||
|ontology_enrichment_celltype=CL:0002188;5.15e-21;5!CL:0000039;1.65e-15;7!CL:0000586;1.65e-15;7!CL:1000746;1.91e-15;7!CL:1000612;1.91e-15;7!CL:0002681;1.33e-09;12!CL:0002584;1.33e-09;12!CL:1000449;5.93e-08;15!CL:1000497;3.58e-07;17!CL:0002518;3.58e-07;17 | |ontology_enrichment_celltype=CL:0000039!2.36e-09!7;CL:0000586!2.36e-09!7 | ||
| | |ontology_enrichment_celltype_v019=CL:0002188;5.15e-21;5!CL:0000039;1.65e-15;7!CL:0000586;1.65e-15;7!CL:1000746;1.91e-15;7!CL:1000612;1.91e-15;7!CL:0002681;1.33e-09;12!CL:0002584;1.33e-09;12!CL:1000449;5.93e-08;15!CL:1000497;3.58e-07;17!CL:0002518;3.58e-07;17 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0002188,5.15e-21,5;CL:0000039,1.65e-15,7;CL:0000586,1.65e-15,7;CL:1000746,1.91e-15,7;CL:1000612,1.91e-15,7;CL:0002681,1.33e-09,12;CL:0002584,1.33e-09,12;CL:1000449,5.93e-08,15;CL:1000497,3.58e-07,17;CL:0002518,3.58e-07,17 | ||
|ontology_enrichment_uberon=UBERON:0000074;1.91e-15;7!UBERON:0001229;1.91e-15;7!UBERON:0001225;1.33e-09;12!UBERON:0008987;1.33e-09;12!UBERON:0001851;5.93e-08;15!UBERON:0006555;5.93e-08;15!UBERON:0000353;5.93e-08;15!UBERON:0004819;5.93e-08;15!UBERON:0001285;5.93e-08;15!UBERON:0007684;5.93e-08;15 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1799!3.55e-08!1;DOID:10165!3.55e-08!1;DOID:1798!3.55e-08!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001874!9.10e-08!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.91e-15;7!UBERON:0001229;1.91e-15;7!UBERON:0001225;1.33e-09;12!UBERON:0008987;1.33e-09;12!UBERON:0001851;5.93e-08;15!UBERON:0006555;5.93e-08;15!UBERON:0000353;5.93e-08;15!UBERON:0004819;5.93e-08;15!UBERON:0001285;5.93e-08;15!UBERON:0007684;5.93e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,1.91e-15,7;UBERON:0000074,1.91e-15,7;UBERON:0001229,1.91e-15,7;UBERON:0001230,1.91e-15,7;UBERON:0003220,1.91e-15,7;UBERON:0005749,1.91e-15,7;UBERON:0004199,1.91e-15,7;UBERON:0004209,1.91e-15,7;UBERON:0004198,1.91e-15,7;UBERON:0005103,1.07e-13,8;UBERON:0000083,1.07e-13,8;UBERON:0009201,1.07e-13,8;UBERON:0006553,1.07e-13,8;UBERON:0003074,1.07e-13,8;UBERON:0003060,1.07e-13,8;UBERON:0000080,2.45e-12,9;UBERON:0002120,2.45e-12,9;UBERON:0004875,2.45e-12,9;UBERON:0005721,2.45e-12,9;UBERON:0005754,2.45e-12,9;UBERON:0007297,2.45e-12,9;UBERON:0004876,2.37e-10,11;UBERON:0001225,1.33e-09,12;UBERON:0008987,1.33e-09,12;UBERON:0003887,1.33e-09,12;UBERON:0001851,5.93e-08,15;UBERON:0004211,5.93e-08,15;UBERON:0009773,5.93e-08,15;UBERON:0000353,5.93e-08,15;UBERON:0001231,5.93e-08,15;UBERON:0001285,5.93e-08,15;UBERON:0007684,5.93e-08,15;UBERON:0004208,5.93e-08,15;UBERON:0006555,1.54e-07,16;UBERON:0004819,1.54e-07,16 | |||
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|short_description=p@chr19:884982..884988,- | |short_description=p@chr19:884982..884988,- | ||
}} | }} |
Latest revision as of 18:44, 27 July 2015
Short description: | p@chr19:884982..884988, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:884982..884988, - |
Coexpression cluster: | C159_choriocarcinoma_pancreatic_placenta_chorionic_testicular_bronchioalveolar_seminal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 5.15e-21 | 5 |
germ line cell | 1.65e-15 | 7 |
germ cell | 1.65e-15 | 7 |
glomerular cell | 1.91e-15 | 7 |
kidney corpuscule cell | 1.91e-15 | 7 |
kidney cortical cell | 1.33e-09 | 12 |
renal cortical epithelial cell | 1.33e-09 | 12 |
epithelial cell of nephron | 5.93e-08 | 15 |
kidney cell | 3.58e-07 | 17 |
kidney epithelial cell | 3.58e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 1.91e-15 | 7 |
renal glomerulus | 1.91e-15 | 7 |
renal corpuscle | 1.91e-15 | 7 |
glomerular capsule | 1.91e-15 | 7 |
metanephric mesenchyme | 1.91e-15 | 7 |
glomerular tuft | 1.91e-15 | 7 |
S-shaped body | 1.91e-15 | 7 |
renal vesicle | 1.91e-15 | 7 |
comma-shaped body | 1.91e-15 | 7 |
mesonephric epithelium | 1.07e-13 | 8 |
mesonephric tubule | 1.07e-13 | 8 |
nephric duct | 1.07e-13 | 8 |
renal duct | 1.07e-13 | 8 |
mesonephric duct | 1.07e-13 | 8 |
pronephric duct | 1.07e-13 | 8 |
mesonephros | 2.45e-12 | 9 |
pronephros | 2.45e-12 | 9 |
nephrogenic cord | 2.45e-12 | 9 |
pronephric mesoderm | 2.45e-12 | 9 |
rostral part of nephrogenic cord | 2.45e-12 | 9 |
presumptive pronephric mesoderm | 2.45e-12 | 9 |
urogenital ridge | 2.37e-10 | 11 |
cortex of kidney | 1.33e-09 | 12 |
renal parenchyma | 1.33e-09 | 12 |
intraembryonic coelom | 1.33e-09 | 12 |
cortex | 5.93e-08 | 15 |
nephron epithelium | 5.93e-08 | 15 |
renal tubule | 5.93e-08 | 15 |
parenchyma | 5.93e-08 | 15 |
nephron tubule | 5.93e-08 | 15 |
nephron | 5.93e-08 | 15 |
uriniferous tubule | 5.93e-08 | 15 |
nephrogenic mesenchyme | 5.93e-08 | 15 |
excretory tube | 1.54e-07 | 16 |
kidney epithelium | 1.54e-07 | 16 |